Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07010 393 / 5e-137 ATST2A ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) AT5G07000 375 / 3e-130 ATST2B ARABIDOPSIS THALIANA SULFOTRANSFERASE 2B, sulfotransferase 2B (.1) AT3G45070 303 / 4e-102 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G03770 291 / 1e-97 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45080 291 / 3e-97 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G43690 286 / 2e-95 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G03750 279 / 3e-92 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G13420 275 / 4e-91 SST1, ATST4B ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, sulfotransferase 4B (.1) AT2G03760 273 / 2e-90 AtSOT12, AtSOT1, ATST1, RAR047, ST ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, sulphotransferase 12 (.1) AT1G28170 270 / 4e-89 SOT7 sulphotransferase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G193300 [exp] 669 / 0 AT5G07010 378 / 4e-131 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193250 [exp] 512 / 0 AT5G07010 395 / 9e-138 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193200 [exp] 509 / 0 AT5G07010 384 / 1e-133 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193500 [exp] 401 / 2e-140 AT5G07010 446 / 1e-157 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G189100 [exp] 358 / 6e-124 AT5G07010 295 / 1e-98 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G188800 [exp] 339 / 3e-116 AT5G07010 325 / 2e-110 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.010G138501 [exp] 337 / 2e-115 AT3G45070 351 / 3e-121 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G005100 [exp] 332 / 2e-113 AT5G07010 301 / 5e-101 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.010G138450 [exp] 332 / 3e-113 AT3G45070 350 / 1e-120 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008673 [exp] 387 / 1e-134 AT5G07010 429 / 3e-151 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Lus10026147 [exp] 379 / 1e-131 AT5G07010 425 / 2e-149 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Lus10017878 [exp] 271 / 2e-89 AT1G18590 289 / 3e-96 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Lus10041611 [exp] 259 / 3e-84 AT3G45070 239 / 9e-77 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10003070 [exp] 232 / 3e-74 AT3G45070 219 / 2e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033720 [exp] 229 / 8e-73 AT1G74100 229 / 6e-73 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10031624 [exp] 223 / 1e-70 AT3G45070 209 / 2e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033716 [exp] 221 / 9e-70 AT3G45070 197 / 7e-61 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10034079 [exp] 219 / 1e-69 AT3G45070 206 / 1e-64 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10018047 [exp] 220 / 2e-69 AT1G74100 208 / 7e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00685 [poplar] [flax] Sulfotransfer_1 Sulfotransferase domain
Representative CDS sequence Show only first row Show all	>Potri.003G193400.1 pacid=42786961 polypeptide=Potri.003G193400.1.p locus=Potri.003G193400 ID=Potri.003G193400.1.v4.1 annot-version=v4.1 ATGGAAGACATTCAAATTACTCAAAGAAACAGTACTGTTTCAGAAACCGGAGAGAGTGATCAATGCCGTGATATAATATCATCCCTTCCCAAAGAAGAAG GATGGGTATCTGGTTATATGTATCTTTACCAAGGCTTTTGGTGCCCTCCGAAGGAGATTCATGCTGTAGTTTCATTCCAAAATAACTTTCAAGCATGCAA CACTGACACTATACTTGTCTCCATGCCTAAATCAGGTACGACATGGTTGAAAGCCTTGGTATTTTCCATCATAAACCGTGAAAAATATCAAACCGCAGAA AGCCCCTTGAATTCTTTCAACCCTCATGATCTCGTGCCTTTCTTTGAGTATAGGCTTTATGCAAACAACCAAGTTCCTGACCTGTCTGCATTTCCATCGC CTAGAATATTTTCAACCCATGTGCCATATCCATCACTGCCAGAATCTATCAGGAACTCTACTTGTCGGGTTGTTTATATATGTAGAAATCCCTTGGACAA CTTTATCTCCTTCTGGCATTTCCTCTCAAAAGCAAGACCTGAGAGACGTGGACCACTTCTTTTGGAGGAGGCTTTTGATAGTTTTTGCAATGGGGTCGTA GGGTTTGGTCCCTTTTTTGATCATGTTCTAGGGTATTGGAAGGAGAGCTTGGAGAGACCAGAGAAGGTATTGTTTCTTAAGTTTGAGGACTTAAAAGAAG ATATCAATTCTCAGATGAAAAGTCTGGCTGTGTTCTTGGGTTGTCCCTTTTCTTTGGAGGAAGAGAGGGATGGGGTTATAGAAGACATATCCAAGCTGTG CAGCCTCGATAGTTTGAAGGATATCGAGGCAAACAAGAGAGGTAAGTCTATCCCATACTTCGAGAATAATACTTTATTTAGAAGAGGTGAGGTTGGGGAC TGGATCAATTATCTTACTCCTGAGATGGTTGATCGTTTAAACAAGATCACAGAACAAAAGTTGGCTGGTTCTGGATTGGAGTTCAAGATTACTAGTCTAT AG
AA sequence Show only first row Show all	>Potri.003G193400.1 pacid=42786961 polypeptide=Potri.003G193400.1.p locus=Potri.003G193400 ID=Potri.003G193400.1.v4.1 annot-version=v4.1 MEDIQITQRNSTVSETGESDQCRDIISSLPKEEGWVSGYMYLYQGFWCPPKEIHAVVSFQNNFQACNTDTILVSMPKSGTTWLKALVFSIINREKYQTAE SPLNSFNPHDLVPFFEYRLYANNQVPDLSAFPSPRIFSTHVPYPSLPESIRNSTCRVVYICRNPLDNFISFWHFLSKARPERRGPLLLEEAFDSFCNGVV GFGPFFDHVLGYWKESLERPEKVLFLKFEDLKEDINSQMKSLAVFLGCPFSLEEERDGVIEDISKLCSLDSLKDIEANKRGKSIPYFENNTLFRRGEVGD WINYLTPEMVDRLNKITEQKLAGSGLEFKITSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.003G193400 [exp]	0	1
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.007G002400 [exp]	1.41	0.9608
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.003G193300 [exp]	2.00	0.9599
AT3G25400			unknown protein		Potri.002G235000 [exp]	2.00	0.9486
AT4G00231		MEE50	maternal effect embryo arrest ...		Potri.008G158901 [exp]	2.44	0.9386
AT3G45080			P-loop containing nucleoside t...		Potri.011G048700 [exp]	3.00	0.9521
					Potri.007G026000 [exp]	3.74	0.9067
AT4G05030			Copper transport protein famil...		Potri.006G001900 [exp]	4.47	0.9160
AT5G45540			Protein of unknown function (D...		Potri.001G146800 [exp]	4.58	0.9279
AT5G23370			GRAM domain-containing protein...		Potri.005G088300 [exp]	9.16	0.8885
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Potri.011G048500 [exp]	9.74	0.9416

Compare expression of checked genes

Potri.003G193400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.