Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07010 445 / 2e-157 ATST2A ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) AT5G07000 421 / 7e-148 ATST2B ARABIDOPSIS THALIANA SULFOTRANSFERASE 2B, sulfotransferase 2B (.1) AT3G45070 326 / 4e-111 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G03750 309 / 6e-104 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45080 303 / 5e-102 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G43690 302 / 1e-101 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G13420 295 / 2e-98 SST1, ATST4B ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, sulfotransferase 4B (.1) AT2G03760 290 / 5e-97 AtSOT12, AtSOT1, ATST1, RAR047, ST ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, sulphotransferase 12 (.1) AT1G28170 289 / 1e-96 SOT7 sulphotransferase 7 (.1) AT2G03770 286 / 1e-95 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G193200 [exp] 421 / 3e-148 AT5G07010 384 / 1e-133 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193250 [exp] 418 / 3e-147 AT5G07010 395 / 9e-138 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193400 [exp] 418 / 5e-147 AT5G07010 393 / 6e-137 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193300 [exp] 414 / 1e-145 AT5G07010 378 / 4e-131 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G189100 [exp] 344 / 6e-118 AT5G07010 295 / 1e-98 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G189066 [exp] 339 / 3e-116 AT5G07010 324 / 5e-110 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.010G138450 [exp] 328 / 1e-111 AT3G45070 350 / 1e-120 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G138501 [exp] 327 / 2e-111 AT3G45070 351 / 3e-121 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G138400 [exp] 322 / 2e-109 AT3G45070 337 / 1e-115 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008673 [exp] 481 / 8e-172 AT5G07010 429 / 3e-151 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Lus10026147 [exp] 475 / 2e-169 AT5G07010 425 / 2e-149 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Lus10017878 [exp] 270 / 1e-88 AT1G18590 289 / 3e-96 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Lus10003070 [exp] 238 / 3e-76 AT3G45070 219 / 2e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10041611 [exp] 234 / 2e-74 AT3G45070 239 / 9e-77 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033720 [exp] 228 / 3e-72 AT1G74100 229 / 6e-73 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10033718 [exp] 227 / 4e-72 AT1G74100 209 / 3e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10034079 [exp] 219 / 3e-69 AT3G45070 206 / 1e-64 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031624 [exp] 218 / 2e-68 AT3G45070 209 / 2e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033721 [exp] 220 / 5e-66 AT1G18590 223 / 6e-67 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00685 [poplar] [flax] Sulfotransfer_1 Sulfotransferase domain
Representative CDS sequence Show only first row Show all	>Potri.003G193500.1 pacid=42785554 polypeptide=Potri.003G193500.1.p locus=Potri.003G193500 ID=Potri.003G193500.1.v4.1 annot-version=v4.1 ATGCCTGCCTCTACTACAACTTCCATGGTTCTCAACCATTTCACAAAGAATCAAGCAAATGACAATGGAGAGGATTTAGAGAGATTAACCAATGAGTGCA AGGAATTGCTGCTTTCACTCCCAAGAGAGAAGGGTTGGAGAACTGCATGCCTCTATAAATACAAAGGGTTTTGGTGCCAACCAAAAGAAATCCAAGCGAT AATCTCTTTTCAAAAACACTTTGAACCAAGAGACACTGATGTTATCCTAGCATCAATACCTAAATCAGGAACTACCTGGCTCAAAGCCCTATCTTTTGCC ATCTTGAATCGCAAGAAATTTGCAATCTCTAGTAATGACCACCCTTTGCTCGTCTCTAATCCTCACGATCTTGCACCTTTCTTTGAGTACAAGCTTTATG CAGACAAGCAAGTTCCTGACCTCTCGAAACTCCCTGATCCTAGACTTTTTGCCACCCACATTCCATTTGCTTCACTTCAAGACTCCATCAAGAAGTCTAA TTGCCGGATTATTTATATCTGTAGAAACCCTTTTGACACTTTTATTTCCTCATGGACTTTCAGCAACAAGCTGAGATCAGAAACTGTTCCTCCACTGTTA CTAGAGGAAACCTTCAAAATGTATTGCGAAGGGGTTGTAGGGTTCGGTCCCTTCTGGGACCATATGTTGGGATACTGGAAGGAAAGCTTGGAGAGACAAG ACAAGGTGTTGTTCTTGAAGTATGAGGACATGAAAGCAGATGTTACGTTTTACTTGAAGAAGATTGCCAAATTTCTTGGCTGCCCTTTTTCAATGGAAGA AGAAAAGGAAGGTGTAGTGGAAAAGATAGCCAGCCTTTGTAGCTTTGAGAAGATGAAGAATTTAGAAGTTAACAAATCTGGAAGGTCTATTACGAACTTC GAAAATAAGCACTTGTTTAGGAAAGCTGAAGTCGGAGATTGGGTGAATTATCTGTCTCCTTCAATGGTGAAGCAATTATCTCAATTAATAGAGGAAAAGT TGGGTGGATCTGGTATTGAATTCAAAGTGTTTCCTTAG
AA sequence Show only first row Show all	>Potri.003G193500.1 pacid=42785554 polypeptide=Potri.003G193500.1.p locus=Potri.003G193500 ID=Potri.003G193500.1.v4.1 annot-version=v4.1 MPASTTTSMVLNHFTKNQANDNGEDLERLTNECKELLLSLPREKGWRTACLYKYKGFWCQPKEIQAIISFQKHFEPRDTDVILASIPKSGTTWLKALSFA ILNRKKFAISSNDHPLLVSNPHDLAPFFEYKLYADKQVPDLSKLPDPRLFATHIPFASLQDSIKKSNCRIIYICRNPFDTFISSWTFSNKLRSETVPPLL LEETFKMYCEGVVGFGPFWDHMLGYWKESLERQDKVLFLKYEDMKADVTFYLKKIAKFLGCPFSMEEEKEGVVEKIASLCSFEKMKNLEVNKSGRSITNF ENKHLFRKAEVGDWVNYLSPSMVKQLSQLIEEKLGGSGIEFKVFP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.003G193500 [exp]	0	1
					Potri.005G160500 [exp]	1.00	0.9611
AT5G47710			Calcium-dependent lipid-bindin...		Potri.016G005300 [exp]	2.44	0.9516
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.002G038500 [exp]	2.82	0.9533	Pt-GMMYB29.2
AT5G09360		LAC14	laccase 14 (.1)		Potri.019G088900 [exp]	4.47	0.9469
AT3G28540			P-loop containing nucleoside t...		Potri.004G091250 [exp]	5.09	0.9132
AT5G09360		LAC14	laccase 14 (.1)		Potri.019G088401 [exp]	6.00	0.9375
AT3G48270		CYP71A26	"cytochrome P450, family 71, s...		Potri.016G137600 [exp]	7.00	0.9400	CYP71AN3
AT5G09360		LAC14	laccase 14 (.1)		Potri.019G088800 [exp]	7.74	0.9408
AT5G04760	MYB		Duplicated homeodomain-like su...		Potri.001G219100 [exp]	8.94	0.9376
AT5G42650		CYP74A, AOS, DD...	DELAYED DEHISCENCE 2, CYTOCHRO...		Potri.002G130700 [exp]	9.48	0.9412	AOS.7

Compare expression of checked genes

Potri.003G193500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.