Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80270 442 / 9e-149 PPR596 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) AT1G15480 425 / 3e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G15590 375 / 1e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G27460 135 / 6e-34 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G60770 132 / 6e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02820 125 / 2e-30 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21705 121 / 3e-29 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20710 121 / 4e-29 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G07590 114 / 9e-27 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G28020 110 / 4e-25 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G039600 [exp] 479 / 5e-163 AT1G80270 654 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Potri.016G036100 [exp] 467 / 4e-158 AT1G80270 634 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Potri.009G030900 [exp] 145 / 2e-37 AT1G07590 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G160100 [exp] 134 / 3e-33 AT5G27460 532 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G079600 [exp] 127 / 3e-31 AT1G60770 701 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G157400 [exp] 124 / 3e-30 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G120900 [exp] 123 / 1e-29 AT4G21705 483 / 8e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G208900 [exp] 120 / 7e-29 AT4G02820 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G063400 [exp] 119 / 3e-28 AT2G20710 349 / 3e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010430 [exp] 460 / 2e-155 AT1G80270 651 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Lus10012112 [exp] 458 / 1e-154 AT1G80270 659 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Lus10031004 [exp] 411 / 2e-136 AT1G80270 532 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Lus10042574 [exp] 142 / 3e-36 AT4G02820 565 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013047 [exp] 135 / 5e-34 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042757 [exp] 132 / 9e-33 AT1G07590 696 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029724 [exp] 129 / 2e-31 AT1G07590 691 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022033 [exp] 125 / 8e-31 AT4G02820 468 / 9e-163 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008724 [exp] 123 / 2e-29 AT5G27460 492 / 6e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016229 [exp] 114 / 3e-27 AT2G20710 269 / 7e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.003G193600.2 pacid=42786641 polypeptide=Potri.003G193600.2.p locus=Potri.003G193600 ID=Potri.003G193600.2.v4.1 annot-version=v4.1 ATGTGGTCTCTCCGTCGAGCTTCTGCACACTCTCGCAGGATAAATAGGTCTTGGCTTGGATGTTTTAGAGCAAGGACTGCTAAATTGGACCGAATATGTC ATTTTGCGAGTGATAGAGCTGGTACATGCACTCTTGAAAATGTGATTTTGGGGAGATATAATTTGTTGAATGAGCTTCACCGTAAGCCACCTATTAGTGA AAAACTATATGTGGGGAGTTGTGGCTACTGTTCTAAGGCTGCTATGGGAAATGACAATGAGAATGATGAAATTGGAGGTGGGTTTTTGGAGTTTGAGACA GGTGGTATGGATGGCATAATTGAAGAGAGCAATGCAGAGGAAGTGGATGAGGAGTCTGGTGATAAAAAGGAAGCTTTAGAGTTATTAAATACAATTACGG AAACTCCAAATATTGTTGATTTTCTTAGTAAGTTTACTGAGGAGGGCAACGAGCTGAGTCGAGGGGAGATTTATTTGATCATGGATCATCTTCGGAAAAA GCAGCTGTATTGGAGGGCATTACAGTTTTCTGAGTGGTTGGAAAGAAGTAAGCAAACTGATTTCACTGAAAGGGACTATGCATGTCATCTTGATTGCATT GCGAAAGTACTGGGGCTTTGGAAGGCAGAGAAGTTTATTGAGAAGATCCCTGAGTCCTTCAGAGGTAAATTAGTTTATCAAACCCTCTTGGCGAGCTGCG TCAGTGTTTTGAATATCAAGAAAGCAGAGTCCGTGTTCCGGAAAATGAGGGACCTAGGGTTGCCAATCACTGTCGAAGCATGTGAACAGATGATAATTAT CTACAAGAGGCTGGAGAAGAAAAAAATACCCAATATATTGTTGATGATGAAGGACCAAAATATCAAACCTTCCTTCCTTACATACAAGCTTCTTATTGAT GCTAAATGTCAGTTTAATGACACAACGGGGATGGAGAAATTAGTTGAGGCTATGAGGAATGAAGGCATGGAACTTGACGTCTTTGCTCTAGCTGTCATAG CAAGGCACTACATAAGTGTGGGATTAAAAGATAAAGCTGACCTCATCTTGAAGCAAATTGAAAAAAGAAAACAGAAGGGTGGAGGTCTTGGAGCTCGTAG ATCATTGCTTTCCCTCTATGCTTCTCTTGGAAATGCTGATGAGGTGGGTAGAATTTGGAAGGAATGCAAAGCAGATCCCAAGCAGAGTGAGTGCATAGCT GCCATACGAGCCTGGGGCAAGTTGGGCAAAGTGGAAGAAGCAGAAGCAGTCTCAGAGATGATGCTTCAGACATGGAAGAATCCCACATTTGGATATTACA CCTCTCTTCTGAATGTTTACATAGACAACAACTTAACCAGTAAGGGCAAGGATCTGGTAGAACAGATGGGTGATATTGGGTCGTGGGCTGGCCCATTGAC CTGGGATGCACTAGTGAGGCTTTATATCAAATCTGGTGATGTTGAGAAAGCGCATTCAATTTTGCTAAAGGTAGCTAGGATGAAGAGGAAGAGGCCTTTG TACACAACATGCATCGCTGTCATGGAGCATTATGCAAAACGAGGCGATATACATAACACAGAGAAGTTGTTCCAGAGTATGAGGGAGCTAGGGTATACAG CACGCTTTAAACCATTTGAGATTCTGGTCGATGCTTACATCAACGCGAAAACTCCAATCTATGGGTTGCGAGCGAGGATGAAGGCAGATAACCTATACCC TAAAAAAGAATTTGCTGGAAAAATGGCATTAGTTGATTGTTTCAGAGGGCTGAATTATCAAATCTGCTTGATTAAGAGCTCCATTGTTCCAGATGTAGCT GTATCATTCCCAAGTTAA
AA sequence Show only first row Show all	>Potri.003G193600.2 pacid=42786641 polypeptide=Potri.003G193600.2.p locus=Potri.003G193600 ID=Potri.003G193600.2.v4.1 annot-version=v4.1 MWSLRRASAHSRRINRSWLGCFRARTAKLDRICHFASDRAGTCTLENVILGRYNLLNELHRKPPISEKLYVGSCGYCSKAAMGNDNENDEIGGGFLEFET GGMDGIIEESNAEEVDEESGDKKEALELLNTITETPNIVDFLSKFTEEGNELSRGEIYLIMDHLRKKQLYWRALQFSEWLERSKQTDFTERDYACHLDCI AKVLGLWKAEKFIEKIPESFRGKLVYQTLLASCVSVLNIKKAESVFRKMRDLGLPITVEACEQMIIIYKRLEKKKIPNILLMMKDQNIKPSFLTYKLLID AKCQFNDTTGMEKLVEAMRNEGMELDVFALAVIARHYISVGLKDKADLILKQIEKRKQKGGGLGARRSLLSLYASLGNADEVGRIWKECKADPKQSECIA AIRAWGKLGKVEEAEAVSEMMLQTWKNPTFGYYTSLLNVYIDNNLTSKGKDLVEQMGDIGSWAGPLTWDALVRLYIKSGDVEKAHSILLKVARMKRKRPL YTTCIAVMEHYAKRGDIHNTEKLFQSMRELGYTARFKPFEILVDAYINAKTPIYGLRARMKADNLYPKKEFAGKMALVDCFRGLNYQICLIKSSIVPDVA VSFPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Potri.003G193600 [exp]	0	1
AT2G20710			Tetratricopeptide repeat (TPR)...		Potri.016G063400 [exp]	1.00	0.9473
AT1G02370			Tetratricopeptide repeat (TPR)...		Potri.002G194400 [exp]	1.41	0.9384
AT3G27550			RNA-binding CRS1 / YhbY (CRM) ...		Potri.001G343700 [exp]	5.00	0.8970
AT2G44850			unknown protein		Potri.002G137300 [exp]	6.48	0.8888
AT4G14000			Putative methyltransferase fam...		Potri.001G321100 [exp]	8.48	0.8947
AT2G33680			Tetratricopeptide repeat (TPR)...		Potri.006G053100 [exp]	8.83	0.9069
AT3G25430			Polynucleotidyl transferase, r...		Potri.014G177400 [exp]	10.39	0.8780
AT4G26780		MGE2, AR192	mitochondrial GrpE 2, Co-chape...		Potri.015G065800 [exp]	13.03	0.8585
AT2G38730			Cyclophilin-like peptidyl-prol...		Potri.001G030000 [exp]	14.69	0.8532
AT3G04020			unknown protein		Potri.010G205900 [exp]	14.83	0.8270

Compare expression of checked genes

Potri.003G193600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.