Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06990 328 / 5e-114 Protein of unknown function, DUF617 (.1) AT4G39610 249 / 4e-83 Protein of unknown function, DUF617 (.1) AT2G21990 248 / 2e-82 Protein of unknown function, DUF617 (.1) AT2G41660 180 / 2e-55 MIZ1 mizu-kussei 1, Protein of unknown function, DUF617 (.1) AT5G42680 170 / 2e-52 Protein of unknown function, DUF617 (.1.2) AT3G25640 159 / 8e-48 Protein of unknown function, DUF617 (.1) AT2G37880 158 / 2e-47 Protein of unknown function, DUF617 (.1) AT1G21050 150 / 1e-44 Protein of unknown function, DUF617 (.1) AT5G23100 150 / 3e-44 Protein of unknown function, DUF617 (.1) AT1G76610 132 / 1e-37 Protein of unknown function, DUF617 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G031900 [exp] 435 / 3e-156 AT5G06990 275 / 6e-93 Protein of unknown function, DUF617 (.1) Potri.005G084000 [exp] 247 / 3e-82 AT2G21990 327 / 4e-114 Protein of unknown function, DUF617 (.1) Potri.006G048800 [exp] 189 / 3e-59 AT2G41660 241 / 3e-79 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Potri.014G035000 [exp] 186 / 9e-59 AT5G42680 286 / 2e-98 Protein of unknown function, DUF617 (.1.2) Potri.002G128800 [exp] 184 / 6e-58 AT5G42680 269 / 2e-91 Protein of unknown function, DUF617 (.1.2) Potri.016G056800 [exp] 185 / 9e-58 AT2G41660 202 / 6e-64 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Potri.010G131600 [exp] 179 / 1e-55 AT3G25640 249 / 1e-82 Protein of unknown function, DUF617 (.1) Potri.012G058300 [exp] 174 / 1e-53 AT5G23100 261 / 7e-88 Protein of unknown function, DUF617 (.1) Potri.008G114500 [exp] 173 / 3e-53 AT3G25640 228 / 2e-74 Protein of unknown function, DUF617 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036630 [exp] 241 / 1e-78 AT4G39610 308 / 5e-105 Protein of unknown function, DUF617 (.1) Lus10035847 [exp] 238 / 1e-77 AT2G21990 306 / 1e-104 Protein of unknown function, DUF617 (.1) Lus10008672 [exp] 174 / 3e-54 AT5G06990 162 / 5e-54 Protein of unknown function, DUF617 (.1) Lus10031059 [exp] 177 / 6e-54 AT2G41660 258 / 4e-85 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10035443 [exp] 174 / 8e-53 AT2G41660 248 / 4e-81 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10021759 [exp] 168 / 4e-51 AT5G42680 254 / 3e-85 Protein of unknown function, DUF617 (.1.2) Lus10019166 [exp] 164 / 2e-49 AT3G25640 258 / 2e-86 Protein of unknown function, DUF617 (.1) Lus10034386 [exp] 159 / 2e-47 AT3G25640 268 / 3e-90 Protein of unknown function, DUF617 (.1) Lus10000863 [exp] 158 / 4e-47 AT5G23100 276 / 3e-93 Protein of unknown function, DUF617 (.1) Lus10027241 [exp] 150 / 6e-44 AT5G23100 270 / 1e-90 Protein of unknown function, DUF617 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04759 [poplar] [flax] DUF617 Protein of unknown function, DUF617
Representative CDS sequence Show only first row Show all	>Potri.003G193700.1 pacid=42785901 polypeptide=Potri.003G193700.1.p locus=Potri.003G193700 ID=Potri.003G193700.1.v4.1 annot-version=v4.1 ATGGCAACTCCACCATCAATCCCACCATCTCTCAAGCCGGTACAGACTCGGTCCCAGTCACCATCGACCTTTCCATCACCCCCAACCACTCCATCTGGAA AGGTGAACCCAATGTCCCCGGTCCGGCCTACTATCTCCCTCCAGCAACCAAATAGCAAGAAAGGTTCATCAAAGCACAATAAGATCTTTCGTCGTGTCCG TGCTGTTTTCCGGTCATTCCCTATCATTGCTCCAGCATGCAAGATTCCTGTCTCACTCCACGGAAACCGCCTCCATGATGGGCACGTTCATGGTGGGACC CGCATGACCGGAACCCTATTTGGGCACCGGAAAGCTAGGATAAACCTTGCCATCCAAGAAAGCCCCGGATCCCTACCTGTTTTATTGCTTGAACTCACAA TCCCCACGGGAAAACTCCTTCAAGATATGGGAGTGGGACTTGTTAGGATTGCCTTGGAATGTGAAAAGAAGCCACATGAAAAGACCAAGATTGAGGATGA ACCGATATGGACAATGTTTTGTAATGGCAGAAAGTCAGGTTATGCGGTCAAGAGGGAGCCAACTGACGAGGATTTGAATGTGATGCAAATCTTGCACGTG GTTTCTATGGGGGCTGGTGTAATACCTACAGGAGATGGAGCCGATCAGCCTGCAGATGGAGAATTAACGTACATGCGGGCATTCTTTGAACGTGTGGCGG GGTCTAAAGACTCAGAGACCTATTATATGTTGAATCCTGATGGAAACAATGGACCAGAACTAAGCTTATTCTTTGTCAGGATTTGA
AA sequence Show only first row Show all	>Potri.003G193700.1 pacid=42785901 polypeptide=Potri.003G193700.1.p locus=Potri.003G193700 ID=Potri.003G193700.1.v4.1 annot-version=v4.1 MATPPSIPPSLKPVQTRSQSPSTFPSPPTTPSGKVNPMSPVRPTISLQQPNSKKGSSKHNKIFRRVRAVFRSFPIIAPACKIPVSLHGNRLHDGHVHGGT RMTGTLFGHRKARINLAIQESPGSLPVLLLELTIPTGKLLQDMGVGLVRIALECEKKPHEKTKIEDEPIWTMFCNGRKSGYAVKREPTDEDLNVMQILHV VSMGAGVIPTGDGADQPADGELTYMRAFFERVAGSKDSETYYMLNPDGNNGPELSLFFVRI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06990			Protein of unknown function, D...		Potri.003G193700 [exp]	0	1
					Potri.001G293700 [exp]	5.29	0.5862
AT2G04025		RGF3	root meristem growth factor 3,...		Potri.008G112400 [exp]	16.15	0.5044
AT3G02645			Plant protein of unknown funct...		Potri.017G124100 [exp]	20.00	0.5083
AT2G24670	B3		Domain of unknown function (DU...		Potri.013G065401 [exp]	22.80	0.5038
AT1G29660			GDSL-like Lipase/Acylhydrolase...		Potri.012G060700 [exp]	27.94	0.4987
AT3G43860		ATGH9A4	glycosyl hydrolase 9A4 (.1)		Potri.006G219700 [exp]	46.73	0.4449
AT3G20190			Leucine-rich repeat protein ki...		Potri.004G170274 [exp]	48.73	0.4392
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Potri.002G090800 [exp]	62.75	0.4446
					Potri.019G089200 [exp]	66.82	0.4533
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.009G091950 [exp]	74.03	0.4098

Compare expression of checked genes

Potri.003G193700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.