Plant FIBer expression Database

Potri.003G194000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G09860 904 / 0 AtTHO1, AtHPR1 nuclear matrix protein-related (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G031700
[exp]
1145 / 0 AT5G09860 916 / 0.0 nuclear matrix protein-related (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024130
[exp]
949 / 0 AT5G09860 933 / 0.0 nuclear matrix protein-related (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF11957 efThoc1 THO complex subunit 1 transcription elongation factor
Representative CDS sequence
>Potri.003G194000.2 pacid=42786478 polypeptide=Potri.003G194000.2.p locus=Potri.003G194000 ID=Potri.003G194000.2.v4.1 annot-version=v4.1
ATGGAAGAATTCAGGAGGGCTATATTGCAGTCTGGTCCAATTGAATCTTTTGCTCTCCAGACCGTTCAAGAATTTATTAAACCTCAGAAGCAAACTAAAT
TAGTGCAAGATGAGAATCAATTGTTGGAAAATATGCTCCGGACATTGCTTCAGGAGCTCGTGTCATCTTCTGCTCAGTCGAGGGAGGAAATAATGTTGTA
TGGGAAGTCCATTGAGGATGGTGAAGACTCACAGGGTCAAATTCCTCGTCTGCTAGATGTTGTTCTGTATCTCTGTGAGAGAGATTTTGTTGAGGGTGGT
ATGATATTCCAGTTGTTGGAAGATTTGACAGAAATGTCTACAATGAGAAATTGCAAGGATATTTTTGGTTACATAGAGAGTAAGCAAGATATACTTGGAA
AGCAAGAACTTTTTGCTCGTGGAAAACTTGTGATGTTGAGAACATGTAATCAACTTCTCCGACGCCTTTCAAAGGCAAATGATGTCGTGTTTTGCGGACG
AATTCTGATGTTTCTAGCACACTTTTTTCCACTATCTGAACGCTCAGCTGTAAACATTAAAGGAGTTTTCAACACATCAAATGAGACTAAATATGAGAAA
GAGCCACCAGCTGCCATTTCTCTTGACTTCAACTTCTATAAAACCATGTGGAGTTTACAGGAGTACTTTTGTGACCCTTCCCTTACTCTTTCTCCAATCA
AGTGGCAAAAATTCTCATTGAGTTTGATGGTCATCTTGAATGCCTTTGAAGCTCAGCCTTTGAGTGAGGAAGAAGGAAGTGCTAACAATTTGGAGGAAGA
GGCGGCATCATTTAACATAAAGTATCTCACAAGCAGTAAACTGATGGGTTTAGAGTTAAAAGATCCAAGTTTTCGACGCCATGTTCTTGTGCAGTGTCTC
ATACTGTTTGACTACCTTAAGGCTCCAGGAAAGAATGACAAAGATTTAACATCTGAAAGCATGAAAGAAGAAATAAAATCTCGCGAGGAGCATGTAAAGA
AGTTGCTTGAAATGACTCCACCTAAAGGAAAAGATTTTCTTCACAAGGTTGAGCATATACTAGAACGTGAAAAGAATTGGCTGTGGTGGAAACGTGATGG
TTGCCCTCCATTTGAAAAGCAGCCAATAGAGAACAAGACAGTCCAAGATGGGGGTAAAAAACGTAGGCCAAGGTGGAGGCTAGGAAATAAAGAGCTCTCA
CAATTGTGGAAGTGGGCAGATCAGAATCCGAATGCCTTGACTGATCCTCAACGTGTTCGAACTCCTGCCATCACAGATTACTGGAAACCATTGGCAGAAG
ATATGGATCCATCAGCTAGCATAGAAGCTGATTATCACCACAAGAATAACCGGGTTTATTGCTGGAAAGGTCTCCGTGTCTCTGCTAGGCAGGATTTGGA
TGGTTTCTCTCGATTTACTGACCATGGTATTGAAGGAGTTGTTCCTTTAGAACTATTGCCACCAGATGTCCGGTCCAAACACCAAGCTAAACCCAATGAC
AGGTCTAAACGTGCCAAAAAGGATGAGCCAAAGGGTGCTTCACATCAAGTGGAAGATAATCAGATTGCAACACCTGCAAGCGAGATTGATGGTGAAGGAA
TCAGAACTGATCTTGAAGCCTCTGTTACACCAATGGACTCTGATGCCATGGCCACGACCAGCAATATTTCACAGAGCAGCACTCCTACACCAGATGAACA
TCAAAAGCAGAGCCCCGACACAGATGGTGGTCAAGAGGCAGGCCACATAGAAGCAGACGCTGAAGCAGAGGCAGGGATGATAGACGGAGAGACTGATGCG
GAGGTAGATTTAGAAGCAGTTGGCTGA
AA sequence
>Potri.003G194000.2 pacid=42786478 polypeptide=Potri.003G194000.2.p locus=Potri.003G194000 ID=Potri.003G194000.2.v4.1 annot-version=v4.1
MEEFRRAILQSGPIESFALQTVQEFIKPQKQTKLVQDENQLLENMLRTLLQELVSSSAQSREEIMLYGKSIEDGEDSQGQIPRLLDVVLYLCERDFVEGG
MIFQLLEDLTEMSTMRNCKDIFGYIESKQDILGKQELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEK
EPPAAISLDFNFYKTMWSLQEYFCDPSLTLSPIKWQKFSLSLMVILNAFEAQPLSEEEGSANNLEEEAASFNIKYLTSSKLMGLELKDPSFRRHVLVQCL
ILFDYLKAPGKNDKDLTSESMKEEIKSREEHVKKLLEMTPPKGKDFLHKVEHILEREKNWLWWKRDGCPPFEKQPIENKTVQDGGKKRRPRWRLGNKELS
QLWKWADQNPNALTDPQRVRTPAITDYWKPLAEDMDPSASIEADYHHKNNRVYCWKGLRVSARQDLDGFSRFTDHGIEGVVPLELLPPDVRSKHQAKPND
RSKRAKKDEPKGASHQVEDNQIATPASEIDGEGIRTDLEASVTPMDSDAMATTSNISQSSTPTPDEHQKQSPDTDGGQEAGHIEADAEAEAGMIDGETDA
EVDLEAVG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G09860 AtTHO1, AtHPR1 nuclear matrix protein-related... Potri.003G194000
[exp]
0 1
AT4G09680 ATCTC1 conserved telomere maintenance... Potri.002G129000
[exp]
3.46 0.8148
AT1G76510 ARID ARID/BRIGHT DNA-binding domain... Potri.002G003700
[exp]
3.46 0.7907
AT3G19860 bHLH bHLH121 basic Helix-Loop-Helix 121, ba... Potri.005G113400
[exp]
3.74 0.8050
AT5G45110 ATNPR3, NPR3 NPR1-like protein 3 (.1) Potri.012G118300
[exp]
7.61 0.7622
AT2G33435 RNA-binding (RRM/RBD/RNP motif... Potri.010G068400
[exp]
8.00 0.8118
AT5G02810 APRR7, PRR7 pseudo-response regulator 7 (.... Potri.010G215200
[exp]
8.66 0.7638
AT1G75660 AtXRN3, XRN3 5'-3' exoribonuclease 3 (.1) Potri.005G237500
[exp]
8.83 0.8114 Pt-XRN2.2
AT5G38640 NagB/RpiA/CoA transferase-like... Potri.004G103700
[exp]
8.83 0.8072
AT5G39570 unknown protein Potri.017G087200
[exp]
10.00 0.7994
AT1G64050 unknown protein Potri.003G133100
[exp]
10.19 0.7892

Potri.003G194000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.