Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATCHX1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79400 625 / 0 ATCHX2 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) AT1G16380 600 / 0 ATCHX1 CATION EXCHANGER 1, Cation/hydrogen exchanger family protein (.1) AT2G13620 352 / 4e-109 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT5G41610 280 / 1e-82 ATCHX18 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) AT1G05580 271 / 8e-79 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) AT3G17630 265 / 4e-77 ATCHX19 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) AT4G23700 261 / 3e-75 ATCHX17 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) AT3G52080 246 / 3e-70 CHX28 cation/hydrogen exchanger 28 (.1) AT1G06970 238 / 4e-67 ATCHX14, CHX14 cation/hydrogen exchanger 14 (.1) AT3G53720 238 / 5e-67 ATCHX20 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G194100 [exp] 1233 / 0 AT1G79400 597 / 0.0 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Potri.007G105200 [exp] 354 / 6e-110 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.013G142301 [exp] 306 / 3e-92 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.001G096320 [exp] 304 / 2e-91 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.009G059400 [exp] 295 / 3e-88 AT3G52080 803 / 0.0 cation/hydrogen exchanger 28 (.1) Potri.003G134900 [exp] 287 / 6e-85 AT5G41610 989 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.007G111400 [exp] 283 / 3e-83 AT1G05580 645 / 0.0 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) Potri.010G005200 [exp] 276 / 4e-81 AT3G17630 1101 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.010G004800 [exp] 276 / 9e-81 AT3G17630 1091 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024132 [exp] 813 / 0 AT1G16380 641 / 0.0 CATION EXCHANGER 1, Cation/hydrogen exchanger family protein (.1) Lus10024131 [exp] 783 / 0 AT1G79400 580 / 0.0 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Lus10026156 [exp] 485 / 3e-164 AT1G79400 356 / 1e-114 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Lus10005382 [exp] 402 / 8e-131 AT1G79400 342 / 8e-108 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Lus10026155 [exp] 355 / 6e-117 AT1G79400 265 / 1e-82 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Lus10030013 [exp] 345 / 5e-106 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10035312 [exp] 343 / 3e-105 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10016403 [exp] 291 / 2e-86 AT3G52080 856 / 0.0 cation/hydrogen exchanger 28 (.1) Lus10019716 [exp] 287 / 3e-85 AT3G52080 857 / 0.0 cation/hydrogen exchanger 28 (.1) Lus10029506 [exp] 285 / 3e-84 AT3G52080 850 / 0.0 cation/hydrogen exchanger 28 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF00999 [poplar] [flax] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Potri.003G194200.2 pacid=42787204 polypeptide=Potri.003G194200.2.p locus=Potri.003G194200 ID=Potri.003G194200.2.v4.1 annot-version=v4.1 ATGGAAGCTGCAAGAAGAGCTCTGTGCGTAAGCGATCCGTTTAACCCACTCATTACAACCTTCGCGCAGTCTGCTGGCATTCTTGTCATCTCTCATTGCT TCCACCTTTTCTTGAAACAATTCGGACAGCCTGGACCTGTTGCACAAATCTTGGCTGGAATTGTTCTAGGTCCCTCATTGTTGTCCCGCATCCCCAAAGT TAATCGATTCTTTATTCAGTCGAGTACCGCGGATTATTATGAAGTAATTGAATCCATTTTCCGCACAGTTTTCATGTTCTTGATAGGCCTAGAGATGGAT ATTCCTTACATGAGGCGAAGCTTGCGAAAAGCGAGCATTATTGCATCTGGTGGGGTGATTGTAGGTGTCTTGTTTGGTATTGCTGTATCCATTTCCCTCA TCATTTTGTTGAAAATAAAATCCCAACTTTTTGATTTTGCCACTATCATCATAATAGCATTAACGAACTCGGCATCTCCTGTAGTTTTTCGACTGGCAGC TGAACTGAAGTTTCTGACTTCAGATACAGGAAGATTGGCAGTCTGTGCTTCTTTGATCACTGAAATGTTTTGCGTGTTATGGAGGTCTGTTAGCCTCGCA GTGGATCCATGGAAAAATTTAGGAACAGGGATTCTTTTCCTTCTTATGACCGTGACACTTATAGGTATAAACAAGTATTTGGCTTCGTGGTGTAACCAGA GGATTCGGAACCAAAAATATGTGACGAACACAGAGTTTGTAGTCTTCTTGTTCCTTTTAATAGCGGCCGCACTTTTTATTGAAGAATATGGTTACAACAG TGCAATATCGTGCTTTTTATTAGGCTTGATGTTCCCTAGGGAAGGCAAAACTACTCGGACATTGTTGCATAAACTCAGTTACGCTACATACAACTTCATA CTTCCAGTGTACTTTGGCTACATAGGTTTTCAGCTTAATGTTTCTATTTTGGGTAGATTAAAACCTTTGATCACGGTTATTGTGATGATTGTAATGTCCA TCGCAACTAAAATTATTGGCACGCTAGTTGCTTGCCGTTACCTCAAGATCTCAACAGAAGAGGGTATTGTACTTGGCTTTTTACTCGATTTGAAGGGAAA TGCCGAACTTCAGATCTTGGGAAAGCTGCCAAAGGAAACTTTGAAACAGTGGGAGGAAGCAGATGTTCACGGTATGGTGCTAACTGTTGTGGTGATTAAC ACTGTGATAGCAGGAGTGGTAGTGGCTCATATATTAAGGAAAAAAGAAGAGTACTTTTCTCACAGCCATATCTCACTTGAATTAGGTGAACATGAGAGTG AACTTCGAATGCTGGCTTGTGTCTACGGATCTCGGAATATATCATCGAAAATTGGATTAATCTCTGCTTTTAGTGAATCTCTCAAAACACCAGTCACCAC TTACCTGATGCACCTAGTTGAGCTACCAAAGAAACGCACCAAGAAGAATTTGATGTACCACCAGCTACAAGATGGTGATCAATACAGTGACGAGGAGGAC TATGGCGGAAATGATGTTGTGGAGATCAATGATGCCGTGGATGCATATACCATGGAGACCAAAGTTTTGATCCACCAAAGGAAAGTTGTGTCTTCCTTTG AGAGAATGTACGAGGATGTGTGTGATTCCATTGAGGACTTGCGTGTTTCGATCATATTTCTGACTTTTCACAAGCACCAGCGCCTTGATGGGAAAATGGA GAGCGGAAAGGATGGAATGAGAACCACTAATCATAAGGTTATGCGTCATGCCCCATGCTCGGTAGGGATCTTTGTGGATCGAGGGCAGACAGGATTTCAA CAACCTAGTTCACAATCTGTGCAAAATATAGCAACATTATTTTTCGGAGGCCCTGATGATCGCGAGGCATTGGCGTGTAGCAAAATGATTTCAAACCATC CTCACATTCATTTGACACTCATACACTTCCAGAATTTACCATCAAGCAAACAGACAGAGTACACCAATGAAATACTCCACAGGAATGATGAGTTGCTGAT GGAAATGTCAAATCACGAGATTGAGGCTGACATTGACAGGGCATATACGCAGGATTTCTATAACAGATATGTGACGTCGGGTCAAGTTGGATATGTAGAG AAGTATGTTGAGAATGGGACTCAAACCGCAGAGGCTCTAAGAGACATACATGATACCTTTTCATTGCTCATTGTAGGAAAGGGTGGTAGAGGGAACTCAC CTATGACAACTGGTATGAGTGACTGGGAGGAGTGTCCAGAGCTGGGGACAGTCGGGGACCTTCTGGCTTCTTCAGAACTTAACACCAACAGTTCGGTTTT GGTCATTCAACAATATCGACATTCGAGAAATGACCTTAATTAG
AA sequence Show only first row Show all	>Potri.003G194200.2 pacid=42787204 polypeptide=Potri.003G194200.2.p locus=Potri.003G194200 ID=Potri.003G194200.2.v4.1 annot-version=v4.1 MEAARRALCVSDPFNPLITTFAQSAGILVISHCFHLFLKQFGQPGPVAQILAGIVLGPSLLSRIPKVNRFFIQSSTADYYEVIESIFRTVFMFLIGLEMD IPYMRRSLRKASIIASGGVIVGVLFGIAVSISLIILLKIKSQLFDFATIIIIALTNSASPVVFRLAAELKFLTSDTGRLAVCASLITEMFCVLWRSVSLA VDPWKNLGTGILFLLMTVTLIGINKYLASWCNQRIRNQKYVTNTEFVVFLFLLIAAALFIEEYGYNSAISCFLLGLMFPREGKTTRTLLHKLSYATYNFI LPVYFGYIGFQLNVSILGRLKPLITVIVMIVMSIATKIIGTLVACRYLKISTEEGIVLGFLLDLKGNAELQILGKLPKETLKQWEEADVHGMVLTVVVIN TVIAGVVVAHILRKKEEYFSHSHISLELGEHESELRMLACVYGSRNISSKIGLISAFSESLKTPVTTYLMHLVELPKKRTKKNLMYHQLQDGDQYSDEED YGGNDVVEINDAVDAYTMETKVLIHQRKVVSSFERMYEDVCDSIEDLRVSIIFLTFHKHQRLDGKMESGKDGMRTTNHKVMRHAPCSVGIFVDRGQTGFQ QPSSQSVQNIATLFFGGPDDREALACSKMISNHPHIHLTLIHFQNLPSSKQTEYTNEILHRNDELLMEMSNHEIEADIDRAYTQDFYNRYVTSGQVGYVE KYVENGTQTAEALRDIHDTFSLLIVGKGGRGNSPMTTGMSDWEECPELGTVGDLLASSELNTNSSVLVIQQYRHSRNDLN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79400		ATCHX2	cation/H+ exchanger 2, cation/...		Potri.003G194200 [exp]	0	1	Pt-ATCHX1.1
					Potri.011G130901 [exp]	5.65	0.7899
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.013G108500 [exp]	18.70	0.7810
AT1G05440			C-8 sterol isomerases (.1)		Potri.010G086100 [exp]	19.28	0.7867
					Potri.011G144466 [exp]	20.92	0.7766
AT1G22220		AUF2	auxin up-regulated f-box prote...		Potri.001G021900 [exp]	22.36	0.6790
AT1G67750			Pectate lyase family protein (...		Potri.010G051800 [exp]	39.49	0.7211
					Potri.009G170800 [exp]	40.00	0.6999
					Potri.002G048450 [exp]	42.73	0.7646
AT2G38152			alpha 1,4-glycosyltransferase ...		Potri.006G098900 [exp]	55.31	0.7550
AT1G12240		ATBETAFRUCT4, V...	VACUOLAR INVERTASE, Glycosyl h...		Potri.003G126300 [exp]	64.65	0.6872

Compare expression of checked genes

Potri.003G194200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.