Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03360 454 / 8e-162 ATRRP4 ribosomal RNA processing 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008171 [exp] 536 / 0 AT1G03360 464 / 5e-166 ribosomal RNA processing 4 (.1) Lus10027982 [exp] 542 / 2e-177 AT2G48060 1580 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14382 [poplar] [flax] ECR1_N Exosome complex exonuclease RRP4 N-terminal region CL0007 [poplar] [flax] KH PF15985 [poplar] [flax] KH_6 KH domain
Representative CDS sequence Show only first row Show all	>Potri.003G194400.2 pacid=42786725 polypeptide=Potri.003G194400.2.p locus=Potri.003G194400 ID=Potri.003G194400.2.v4.1 annot-version=v4.1 ATGAGAGGGATAGAGATATCATTGAATCAAACCCAAAAGATAAGGTTGCAGAGAGCTCTGAAACAGCTAGAATCTTTGTATTTGAGAGCCAACTTCAATG CTTCTGTAACTGTCGCCGATACCATCCCCGTTAGCAACGAAGACACCATCCTCAAGGGTCATGGCACCTCTGAGCGCGACGGAGAAGTGGTGGCGACGCT CTGTGGTGTGGTGGAGCGTGTTAACAAATTAGTGTATGTTCGCACGTTGCGTGCCAGGTACAAGCCAGAGATTGGAGATATCATAGTGGGGCGTGTTGTT GAGGTAGCGCAAAAGCGGTGGAAATTGGAAATTAATTTCAGCCAAGATGCTGTTTTGATGCTTTCTTCTATGAATTTACCTGATGGGCTTCAGAGGCGGC GAACTGCATTGGATGAACTCAACATGCGCAGTATTTTTGAGGAGAATGATGTTGTGTGTGGTGAGGTGCGTAATTTTCAGAATGATGGTGGCATACAATT GCAAGCAAGAAGTCAGAAGTATGGAAAGCTTGAGAAGGGTCAGTTGCTCACGATTCCACCATATCTAGTGAAAAGACAAAAACATCATTTCCATCATTTG GAACAGTATGGAGTTGACCTGATACTAGGATGTAATGGGTTCATTTGGGTTGGTGAGCATGTAGAGGCCAGGGACTGTATTGTAGAGGATCAACTAAACA ATACGGAACAACAATTCACCAAATCCAATACAACCAAAGAAATGCCACTAGAGACGAGGCGGAGCATATGTCAGATAGCAAATGCTATCCGTGTCTTGTC AATTTTGGGCTTTAATGTAACTTTAGAAGTGATACTGGAGACTATTGACTTGAGCAGCACACTGAATCTTGGAATAGATGAGATGCTTGGGCCAGAGTTC CATGTTTTGGTAGCAGAGAGAGAAGCTGAACGCCGCACATCGATGACAAAAAGGAAGGGGTGA
AA sequence Show only first row Show all	>Potri.003G194400.2 pacid=42786725 polypeptide=Potri.003G194400.2.p locus=Potri.003G194400 ID=Potri.003G194400.2.v4.1 annot-version=v4.1 MRGIEISLNQTQKIRLQRALKQLESLYLRANFNASVTVADTIPVSNEDTILKGHGTSERDGEVVATLCGVVERVNKLVYVRTLRARYKPEIGDIIVGRVV EVAQKRWKLEINFSQDAVLMLSSMNLPDGLQRRRTALDELNMRSIFEENDVVCGEVRNFQNDGGIQLQARSQKYGKLEKGQLLTIPPYLVKRQKHHFHHL EQYGVDLILGCNGFIWVGEHVEARDCIVEDQLNNTEQQFTKSNTTKEMPLETRRSICQIANAIRVLSILGFNVTLEVILETIDLSSTLNLGIDEMLGPEF HVLVAEREAERRTSMTKRKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03360		ATRRP4	ribosomal RNA processing 4 (.1...		Potri.003G194400 [exp]	0	1
AT3G07050		NSN1	nucleostemin-like 1, GTP-bindi...		Potri.002G241100 [exp]	1.00	0.8710
AT3G51790		ATG1	transmembrane protein G1P-rela...		Potri.003G205200 [exp]	1.41	0.8114
AT5G13890			Family of unknown function (DU...		Potri.002G237200 [exp]	3.00	0.7575
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Potri.002G213500 [exp]	4.58	0.7999
AT3G16310			mitotic phosphoprotein N' end ...		Potri.001G188300 [exp]	8.48	0.7878
AT5G49400			zinc knuckle (CCHC-type) famil...		Potri.010G142400 [exp]	11.31	0.7309
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Potri.001G198100 [exp]	14.49	0.7102	ATTIM23.2
AT3G02010			Pentatricopeptide repeat (PPR)...		Potri.002G237100 [exp]	15.42	0.7072
AT1G80750			Ribosomal protein L30/L7 famil...		Potri.001G047400 [exp]	19.28	0.7754
AT3G19330			Protein of unknown function (D...		Potri.010G240200 [exp]	22.13	0.7785

Compare expression of checked genes

Potri.003G194400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.