Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12250 463 / 1e-162 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (.1.2.3.4.5) AT5G06950 444 / 6e-155 bZIP TGA2, AHBP-1B bZIP transcription factor family protein (.1.2.3.4) AT5G06960 422 / 1e-146 bZIP TGA5, OBF5 TGACG MOTIF-BINDING FACTOR 5, OCS-element binding factor 5 (.1.2) AT1G68640 343 / 7e-114 bZIP PAN PERIANTHIA, bZIP transcription factor family protein (.1) AT1G08320 306 / 2e-100 bZIP TGA9, bZIP21 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) AT5G06839 305 / 2e-99 bZIP TGA10, bZIP65 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) AT1G22070 284 / 1e-91 bZIP TGA3 TGA1A-related gene 3 (.1) AT5G10030 279 / 6e-90 bZIP OBF4, TGA4 OCS ELEMENT BINDING FACTOR 4, TGACG motif-binding factor 4 (.1.2) AT1G77920 275 / 1e-88 bZIP bZIP transcription factor family protein (.1) AT5G65210 268 / 1e-86 bZIP TGA1 bZIP transcription factor family protein (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G029800 [exp] 739 / 0 AT3G12250 423 / 4e-147 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.006G039000 [exp] 549 / 0 AT5G06950 413 / 3e-143 bZIP transcription factor family protein (.1.2.3.4) Potri.016G036500 [exp] 536 / 0 AT5G06950 410 / 2e-142 bZIP transcription factor family protein (.1.2.3.4) Potri.008G118300 [exp] 419 / 1e-143 AT1G68640 456 / 8e-159 PERIANTHIA, bZIP transcription factor family protein (.1) Potri.006G058800 [exp] 330 / 1e-107 AT5G06839 540 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.004G203400 [exp] 315 / 2e-102 AT1G08320 571 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Potri.016G049200 [exp] 315 / 3e-102 AT5G06839 551 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.009G164300 [exp] 310 / 3e-100 AT1G08320 574 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Potri.005G170500 [exp] 290 / 2e-94 AT1G77920 468 / 5e-166 bZIP transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008658 [exp] 512 / 0 AT3G12250 521 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10024140 [exp] 508 / 2e-180 AT3G12250 532 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10026166 [exp] 507 / 7e-180 AT3G12250 514 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10041475 [exp] 338 / 2e-111 AT1G68640 444 / 4e-153 PERIANTHIA, bZIP transcription factor family protein (.1) Lus10004876 [exp] 318 / 6e-103 AT1G08320 635 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10034296 [exp] 313 / 8e-102 AT1G68640 427 / 1e-146 PERIANTHIA, bZIP transcription factor family protein (.1) Lus10020610 [exp] 313 / 9e-101 AT1G08320 633 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10023822 [exp] 308 / 2e-99 AT5G06839 491 / 2e-171 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Lus10043387 [exp] 291 / 2e-93 AT1G08320 481 / 7e-168 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10019543 [exp] 286 / 3e-91 AT1G08320 508 / 5e-178 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [poplar] [flax] bZIP PF00170 [poplar] [flax] bZIP_1 bZIP transcription factor CL0018 [poplar] [flax] PF14144 [poplar] [flax] DOG1 Seed dormancy control
Representative CDS sequence Show only first row Show all	>Potri.003G194600.12 pacid=42785531 polypeptide=Potri.003G194600.12.p locus=Potri.003G194600 ID=Potri.003G194600.12.v4.1 annot-version=v4.1 ATGGGGAGTAGAACTGATGCAGAAGATGAGAAGAAGGCTGTCGGGATGCCGAGCTTTGATCCTCAGTTGCCAATCTCAAATGCAATTGTAGAGAGAAGCA CAGTTCATCCTTACCGTGTTACTGATTTTGGGGTGTTCTTAGAAGACGATGCTATTGACCTGAGTGCAGGTACTGTGTTCAATTCAGCAAAAGAAAGTAC TCAAGCAATCCCTTCTGACCGCCTCCATAGTGGCACTTTCGAGAAGAAACAGTCTACTACTACATTTAACATTAAGTCATCTGCTTCTCAAGTGGAGTCT CATAGATTACCCTTAGAAAAAGTTCAACAGTCAAACCAGGTTTCTATACCAATTGTTGATACAGAAAACTGGGGGGAGAATCGGAGGTTGCCATTAGAAA AGGTTCAACAGTCCAACCGGGTTTCTATACCAAGTGTTAATACAGAGAACTGGGGGGAGGCCAATATGGCTGATGCTAGTCCAAGGACTGATATCTCAAC GGATGCAGACACAGACGATAAAAACCAAAGGTATGATAGAGGTCAATCTACCGCTCTCGTGGCATCTGATTCCAGTGACAGAACAAGGGACAAAATGGAC CAGAAGACTCTTCGCAGGCTTGCTCAAAATAGAGAAGCTGCAAGAAAAAGCCGTTTGAGGAAGAAAGCATATGTCCAGCAGCTGGAGAGTAGCCGCTTGA AGCTCAGCCAACTGGAACAGGAGCTCCAACGGGCACGGCAGCAGGGAATCTTCATATCAAGCTCAGGAGACCAAACTCATTCAATGAGTGGAAATGGGGC CATGGCATTTGATGTAGAATATGCACGATGGCTGGAGGAGCAAAATCGACAAATTAATGAGTTGAGATCAGCTGTCAATTCTCATGCTGGTGATGCAGAA CTTCGTATTATCACTGATGGTATAATGGCTCACTATGATGAAGTTTTCAAGCTGAAGAGCAACGCAGCCAAGGCTGATGTTTTCCATTTGCTGTCTGGCA TGTGGAAGACACCTGCAGAGAGGTGTTTCTTGTGGCTTGGTGGCTTCCGTTCATCTGAGCTCCTCAAGCTTCTTATGAATCAATTGGAGCCTTTAACAGA GCAGCAGTTGGTGGGCATTGGCAACTTACAGCAGTCCTCCCAACAGGCGGAAGATGCATTATCTCAAGGGATGGAGGCATTGCAGCAGTCCCTCTCTGAG ACTTTGTCCAGCGGATCTCTTGGCTCCTCAGGGCCATCTGGAAATGTGGCAAATTACATGGGTCAGATGGCCATGGCCATGGGAAAGCTAGGTACCCTTG AGGGATTTATTCGCCAGGCTGACAATTTGAGGCAGCAAACCTTACAACAAATGCACCGAATATTAACCACCCGTCAGTCTGCTCGTGCTCTCCTTGCAAT ACACGATTACTTTTCCCGTTTACGTGCTCTTAGTTCCCTCTGGCTCGCGCGACCTAAAGAGTGA
AA sequence Show only first row Show all	>Potri.003G194600.12 pacid=42785531 polypeptide=Potri.003G194600.12.p locus=Potri.003G194600 ID=Potri.003G194600.12.v4.1 annot-version=v4.1 MGSRTDAEDEKKAVGMPSFDPQLPISNAIVERSTVHPYRVTDFGVFLEDDAIDLSAGTVFNSAKESTQAIPSDRLHSGTFEKKQSTTTFNIKSSASQVES HRLPLEKVQQSNQVSIPIVDTENWGENRRLPLEKVQQSNRVSIPSVNTENWGEANMADASPRTDISTDADTDDKNQRYDRGQSTALVASDSSDRTRDKMD QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLSQLEQELQRARQQGIFISSSGDQTHSMSGNGAMAFDVEYARWLEEQNRQINELRSAVNSHAGDAE LRIITDGIMAHYDEVFKLKSNAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLMNQLEPLTEQQLVGIGNLQQSSQQAEDALSQGMEALQQSLSE TLSSGSLGSSGPSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPKE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Potri.003G194600 [exp]	0	1
AT3G54440			glycoside hydrolase family 2 p...		Potri.003G196500 [exp]	5.29	0.8204
AT1G26110		DCP5	decapping 5 (.1.2)		Potri.008G114900 [exp]	9.59	0.8255
AT4G25880		APUM6	pumilio 6 (.1.2.3)		Potri.006G165100 [exp]	10.00	0.8391	Pt-PPD1.4
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Potri.001G213800 [exp]	12.24	0.8347	RHF2.3
AT1G80070		EMB33, EMB177, ...	ABNORMAL SUSPENSOR 2, EMBRYO D...		Potri.003G031900 [exp]	14.42	0.8359	Pt-EMB177.4
AT4G35900	bZIP	ATBZIP14, FD-1,...	Basic-leucine zipper (bZIP) tr...		Potri.002G018400 [exp]	14.69	0.7778
AT1G10520		AtPol{lambda}	DNA polymerase {lambda}, DNA p...		Potri.010G094800 [exp]	15.71	0.8033
AT5G48820		ICK6, KRP3	KIP-RELATED PROTEIN 3, inhibit...		Potri.001G314000 [exp]	15.87	0.7824
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Potri.002G241800 [exp]	16.97	0.8227
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Potri.005G126000 [exp]	17.60	0.8242

Compare expression of checked genes

Potri.003G194600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.