Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12600 225 / 5e-76 ATNUDT16 nudix hydrolase homolog 16 (.1.2) AT1G12880 169 / 1e-53 ATNUDT12 nudix hydrolase homolog 12 (.1) AT3G26690 165 / 3e-52 ATNUDX13, ATNUDT13 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13, nudix hydrolase homolog 13 (.1.2) AT1G18300 146 / 1e-44 ATNUDT4 nudix hydrolase homolog 4 (.1) AT1G14860 138 / 5e-42 ATNUDT18 nudix hydrolase homolog 18 (.1) AT2G01670 135 / 1e-40 ATNUDT17 nudix hydrolase homolog 17 (.1) AT1G73540 133 / 1e-39 ATNUDT21 nudix hydrolase homolog 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G029500 [exp] 306 / 2e-108 AT3G12600 219 / 5e-74 nudix hydrolase homolog 16 (.1.2) Potri.016G036700 [exp] 165 / 6e-53 AT3G12600 159 / 8e-51 nudix hydrolase homolog 16 (.1.2) Potri.001G069200 [exp] 164 / 2e-52 AT1G12880 219 / 2e-73 nudix hydrolase homolog 12 (.1) Potri.003G161100 [exp] 164 / 1e-51 AT1G12880 213 / 4e-70 nudix hydrolase homolog 12 (.1) Potri.015G035000 [exp] 151 / 8e-46 AT1G18300 195 / 2e-62 nudix hydrolase homolog 4 (.1) Potri.012G044300 [exp] 144 / 4e-44 AT1G18300 199 / 5e-65 nudix hydrolase homolog 4 (.1) Potri.004G085600 [exp] 144 / 5e-44 AT1G14860 206 / 2e-68 nudix hydrolase homolog 18 (.1) Potri.017G131000 [exp] 142 / 2e-43 AT2G01670 223 / 6e-75 nudix hydrolase homolog 17 (.1) Potri.008G134000 [exp] 138 / 7e-42 AT2G01670 218 / 3e-73 nudix hydrolase homolog 17 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026164 [exp] 280 / 9e-98 AT3G12600 221 / 1e-74 nudix hydrolase homolog 16 (.1.2) Lus10008660 [exp] 280 / 4e-97 AT3G12600 221 / 6e-74 nudix hydrolase homolog 16 (.1.2) Lus10024137 [exp] 251 / 1e-86 AT3G12600 211 / 1e-70 nudix hydrolase homolog 16 (.1.2) Lus10034598 [exp] 138 / 7e-42 AT1G14860 248 / 5e-85 nudix hydrolase homolog 18 (.1) Lus10021780 [exp] 137 / 2e-41 AT1G14860 244 / 2e-83 nudix hydrolase homolog 18 (.1) Lus10001598 [exp] 135 / 1e-40 AT1G14860 252 / 1e-86 nudix hydrolase homolog 18 (.1) Lus10003713 [exp] 115 / 2e-32 AT1G14860 213 / 8e-71 nudix hydrolase homolog 18 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [poplar] [flax] NUDIX PF00293 [poplar] [flax] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Potri.003G194900.1 pacid=42785025 polypeptide=Potri.003G194900.1.p locus=Potri.003G194900 ID=Potri.003G194900.1.v4.1 annot-version=v4.1 ATGTCTGAATTGGTGGCACGTACTGGTCGACTCCAACAACGTTATGAGGGCGGTTGTCGACTTGTTGCCGGGTGTATTCCATATAGATTTAGAGATTATT GTGAGGATGGAGATGATTCAGCGAAGGTTGTGGAGGTTCTTATGATCAACTCGCCCAGTGGACCAGGTCTCTTGTTTCCAAAGGGAGGATGGGAGAATGA TGAGACTGCCAAAGAGGCTGCTGTGAGGGAAGCCATTGAAGAAGCAGGAGTTCGAGGCGATCTAATGGATTTCATAGGGGATTATCAGTTTAAGAGTAAA ACACTCCAAGATGAGTGTTGCCCAGATGGTTTGTGTAAAGCTGCAATGTATGCTCTATTTGTCAAGGAGGAGCTCGAGTCATGGCCAGAGCAGAGCACAC GAACAAGAAGTTGGTTAACTATACCTGAAGCAGTTGACAGTTGCCGGCATAAATGGATGGAAGAGGCTTTGAAGGACTTCTCTAGCTGGCTTGAAGATAA GATGTAA
AA sequence Show only first row Show all	>Potri.003G194900.1 pacid=42785025 polypeptide=Potri.003G194900.1.p locus=Potri.003G194900 ID=Potri.003G194900.1.v4.1 annot-version=v4.1 MSELVARTGRLQQRYEGGCRLVAGCIPYRFRDYCEDGDDSAKVVEVLMINSPSGPGLLFPKGGWENDETAKEAAVREAIEEAGVRGDLMDFIGDYQFKSK TLQDECCPDGLCKAAMYALFVKEELESWPEQSTRTRSWLTIPEAVDSCRHKWMEEALKDFSSWLEDKM

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12600		ATNUDT16	nudix hydrolase homolog 16 (.1...		Potri.003G194900 [exp]	0	1
AT2G05810			ARM repeat superfamily protein...		Potri.002G224400 [exp]	6.24	0.7523
AT4G22160			unknown protein		Potri.006G270200 [exp]	14.69	0.7289
AT5G39530			Protein of unknown function (D...		Potri.017G087500 [exp]	15.42	0.7029
AT4G20940			Leucine-rich receptor-like pro...		Potri.011G163700 [exp]	16.97	0.7385
AT4G22160			unknown protein		Potri.011G011400 [exp]	18.43	0.7272
AT5G51750		ATSBT1.3	subtilase 1.3 (.1)		Potri.015G133800 [exp]	21.07	0.7358
AT4G28950		ATRAC7, ARAC7, ...	Arabidopsis RAC-like 7, RHO-re...		Potri.018G083400 [exp]	23.10	0.7408	Pt-ARAC7.2
AT4G37760		SQE3	squalene epoxidase 3 (.1)		Potri.007G007600 [exp]	27.92	0.7032
AT5G01225			unknown protein		Potri.016G112700 [exp]	30.28	0.7297
AT5G06470			Glutaredoxin family protein (....		Potri.016G067700 [exp]	30.74	0.7285

Compare expression of checked genes

Potri.003G194900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.