Plant FIBer expression Database

Potri.003G194950 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.003G194950.1 pacid=42784883 polypeptide=Potri.003G194950.1.p locus=Potri.003G194950 ID=Potri.003G194950.1.v4.1 annot-version=v4.1
ATGCAGCAGTCAGTGCATTCGTACCGACCTCACATATTCTTCCAATCTTTACAGAAAAAGAGAAACTTCGTAATTCAGGTGGATTCTATGGTGATAGATG
GATGGCTCAGGAGTGGGGCACGTCTGCAATGCTTACTCGAGCTTGATTTCATCATGAATGGCATCGCCTTCTCCACGAGAGCATGGGAAAAATCCATAGG
CCATGTAGGACAATGCTTCCATGATTTAGGGTTCTCGGCATTCTTTGGATTTTGGTGCAGTATCCTTGAAACCCTGATCATCTCTCTCTTTTATTTATTT
ATTTTCACTGTACAAGCTAGCTACCACATCTTCTTGTTCTTGATGGATCATTGA
AA sequence
>Potri.003G194950.1 pacid=42784883 polypeptide=Potri.003G194950.1.p locus=Potri.003G194950 ID=Potri.003G194950.1.v4.1 annot-version=v4.1
MQQSVHSYRPHIFFQSLQKKRNFVIQVDSMVIDGWLRSGARLQCLLELDFIMNGIAFSTRAWEKSIGHVGQCFHDLGFSAFFGFWCSILETLIISLFYLF
IFTVQASYHIFLFLMDH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.003G194950
[exp]
0 1
Potri.017G127501
[exp]
3.00 1.0000
AT5G09620 Octicosapeptide/Phox/Bem1p fam... Potri.002G108800
[exp]
4.00 1.0000
AT3G63520 ATNCED1, ATCCD1... carotenoid cleavage dioxygenas... Potri.018G043500
[exp]
5.91 0.9490
AT2G32660 AtRLP22 receptor like protein 22 (.1) Potri.001G437800
[exp]
6.24 0.8684
AT4G34880 Amidase family protein (.1) Potri.004G169400
[exp]
6.70 0.9330
AT3G04280 ARR22 response regulator 22 (.1.2.3) Potri.003G172866
[exp]
6.92 0.9385
AT4G27300 S-locus lectin protein kinase ... Potri.010G018050
[exp]
7.41 0.8896
AT2G32660 AtRLP22 receptor like protein 22 (.1) Potri.001G437600
[exp]
8.36 0.8306
AT1G07390 AtRLP1 receptor like protein 1 (.1.2.... Potri.001G064900
[exp]
8.94 0.9302
AT3G50740 UGT72E1 UDP-glucosyl transferase 72E1 ... Potri.007G030300
[exp]
9.21 0.7652

Potri.003G194950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.