Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08315 364 / 1e-126 ARM repeat superfamily protein (.1) AT2G23140 117 / 3e-29 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT1G23030 114 / 4e-28 PUB11 ARM repeat superfamily protein (.1) AT5G67340 103 / 2e-24 ARM repeat superfamily protein (.1) AT3G54850 99 / 4e-23 ATPUB14 plant U-box 14 (.1) AT2G28830 94 / 5e-21 AtPUB12 PLANT U-BOX 12 (.1) AT1G71020 92 / 2e-20 ARM repeat superfamily protein (.1.2) AT1G29340 90 / 1e-19 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT3G54790 88 / 3e-19 ARM repeat superfamily protein (.1.2) AT3G46510 86 / 2e-18 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G028300 [exp] 511 / 0 AT1G08315 343 / 3e-118 ARM repeat superfamily protein (.1) Potri.005G144700 [exp] 112 / 2e-27 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.008G035700 [exp] 112 / 2e-27 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.010G113900 [exp] 108 / 2e-26 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1) Potri.007G051000 [exp] 108 / 3e-26 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.010G185900 [exp] 108 / 4e-26 AT3G46510 335 / 2e-105 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.008G071600 [exp] 105 / 6e-25 AT3G46510 345 / 2e-109 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.008G128600 [exp] 103 / 2e-24 AT1G23030 697 / 0.0 ARM repeat superfamily protein (.1) Potri.005G225400 [exp] 100 / 2e-23 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024145 [exp] 420 / 1e-148 AT1G08315 390 / 2e-136 ARM repeat superfamily protein (.1) Lus10008655 [exp] 417 / 9e-148 AT1G08315 393 / 5e-138 ARM repeat superfamily protein (.1) Lus10039500 [exp] 414 / 9e-142 AT1G08315 383 / 2e-129 ARM repeat superfamily protein (.1) Lus10026170 [exp] 130 / 6e-38 AT1G08315 106 / 6e-29 ARM repeat superfamily protein (.1) Lus10007511 [exp] 121 / 1e-30 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10006007 [exp] 109 / 5e-29 AT1G08315 111 / 8e-30 ARM repeat superfamily protein (.1) Lus10017444 [exp] 112 / 2e-27 AT3G46510 381 / 2e-123 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10034113 [exp] 106 / 3e-25 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10043471 [exp] 105 / 3e-25 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10011514 [exp] 103 / 4e-24 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Potri.003G195400.1 pacid=42786562 polypeptide=Potri.003G195400.1.p locus=Potri.003G195400 ID=Potri.003G195400.1.v4.1 annot-version=v4.1 ATGGAAGTCAAGCACAGGACAGCGCGCTCACTAGTTAAAAAACTAGGTTCTGTGTCCGAGATAACACGGTCAGAAGCCTTAGCTGAACTTCGCTTAATGA CCAAAAACGATGCGGAATCACGGCTGATAATTGCCGAAGCCGGTGCCATCCCGTATCTAGCCGAAACCCTTTATTCTTCTTCTCACGACTCACAAGATAA CGCAGCTGCTACTCTCTTGAACATCTCTATTTCTTCACGCGCCCCCTTGATGTCAACGCGCGGCCTTCTTGACGCGATCTCTCATGTCCTCCGCCACCAT GCCACCAATTCTTCACCCTCAGCTGTCCAATCATCTGCTGCTACGTTGTACAGCCTTCTTGTTGATGATTCTTACCGATCCATTATCGGGGCTAAGCGTG ATATTGCTTATTCCTTGATTGAAATAATCAAGAGGCCTAATTCGCCGCCGAGGTCTATAAAGGATGCGCTGAAAGCCCTTTTTGGGATTGCTTTGTTTCC GTTGAATCGGGCTGGTTTGATTGATTTAGGTGCGGCGGGGGCGTTGTTTTCGCTGGTTTTGAAGGATGGGAGAGTGGGTATTGTGGAGGATACGACGGCG GTGATTGCGCAAATTGCAGGGTGTGAGGAGAGTGAGAGCGCATTTTGGAAGGTTTCGGGGGTTAAGGTTTTGGAGGACTTGTTGGATGTTGGGACGGGTT CGAGCGAGAGGACAAAGGAGAATGCGGTTGGGGCATTGTTGAATTTGGTGAGGTGTGGAGGGGGAGGAGTGATGAGGGAGGTGAAGGAAATGAGACCGGG CGCAGTGGAGGGGATCAAGGATGTGAGGGAGAATGGGACCGCGAAAGGGAAGAGCAAAGCGATTGCATTGTTGAAAGCTGTTGAGGGTGGAGCAAAGAAA TGGGATTTCGCGGTTTGA
AA sequence Show only first row Show all	>Potri.003G195400.1 pacid=42786562 polypeptide=Potri.003G195400.1.p locus=Potri.003G195400 ID=Potri.003G195400.1.v4.1 annot-version=v4.1 MEVKHRTARSLVKKLGSVSEITRSEALAELRLMTKNDAESRLIIAEAGAIPYLAETLYSSSHDSQDNAAATLLNISISSRAPLMSTRGLLDAISHVLRHH ATNSSPSAVQSSAATLYSLLVDDSYRSIIGAKRDIAYSLIEIIKRPNSPPRSIKDALKALFGIALFPLNRAGLIDLGAAGALFSLVLKDGRVGIVEDTTA VIAQIAGCEESESAFWKVSGVKVLEDLLDVGTGSSERTKENAVGALLNLVRCGGGGVMREVKEMRPGAVEGIKDVRENGTAKGKSKAIALLKAVEGGAKK WDFAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08315			ARM repeat superfamily protein...		Potri.003G195400 [exp]	0	1
AT3G07300			NagB/RpiA/CoA transferase-like...		Potri.001G026100 [exp]	1.41	0.8102
AT1G52080		AR791	actin binding protein family (...		Potri.001G191300 [exp]	1.73	0.8173
AT1G63840			RING/U-box superfamily protein...		Potri.003G130900 [exp]	2.82	0.7654
AT5G58190		ECT10	evolutionarily conserved C-ter...		Potri.018G149800 [exp]	3.00	0.7805
AT3G13060		ECT5	evolutionarily conserved C-ter...		Potri.014G001000 [exp]	5.19	0.7541
AT3G04350			Plant protein of unknown funct...		Potri.013G048300 [exp]	6.32	0.7577
AT3G59520		ATRBL13	RHOMBOID-like protein 13 (.1)		Potri.017G027800 [exp]	7.41	0.7646
					Potri.016G130101 [exp]	11.48	0.7640
AT2G46690			SAUR-like auxin-responsive pro...		Potri.012G023400 [exp]	12.12	0.7240	SAUR22
AT1G76710		ASHH1 ,SDG26	ASH1-RELATED PROTEIN 1, ASH1 R...		Potri.005G195400 [exp]	13.85	0.7318

Compare expression of checked genes

Potri.003G195400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.