Plant FIBer expression Database

Potri.003G195600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G13500 533 / 0 unknown protein
AT2G25260 447 / 6e-158 unknown protein
AT5G25265 435 / 4e-153 unknown protein
AT3G01720 67 / 5e-12 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G028100
[exp]
623 / 0 AT5G13500 570 / 0.0 unknown protein
Potri.009G070000
[exp]
508 / 0 AT5G13500 515 / 0.0 unknown protein
Potri.001G275600
[exp]
506 / 0 AT5G13500 543 / 0.0 unknown protein
Potri.018G023100
[exp]
455 / 7e-161 AT5G25265 583 / 0.0 unknown protein
Potri.006G258800
[exp]
449 / 7e-159 AT5G25265 577 / 0.0 unknown protein
Potri.001G336400
[exp]
67 / 7e-12 AT3G01720 1215 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036037
[exp]
524 / 0 AT5G13500 542 / 0.0 unknown protein
Lus10009691
[exp]
522 / 0 AT5G13500 541 / 0.0 unknown protein
Lus10005347
[exp]
449 / 2e-158 AT5G25265 612 / 0.0 unknown protein
Lus10041028
[exp]
446 / 4e-157 AT5G25265 618 / 0.0 unknown protein
Lus10022320
[exp]
64 / 8e-11 AT3G01720 1181 / 0.0 unknown protein
Lus10014878
[exp]
61 / 6e-10 AT3G01720 1197 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Potri.003G195600.7 pacid=42784670 polypeptide=Potri.003G195600.7.p locus=Potri.003G195600 ID=Potri.003G195600.7.v4.1 annot-version=v4.1
ATGGGACAGGCTTCGTCACCAGTTCTGATTCTATTAGCTTTTGGGTTTTTCTTTGCTACATACAACTTAGTCACCATGACAATGCACAATAGATCTATTG
GGAAATGGGTATATGACGATTCGGATGGTGAGGCATTTTTCGATCCAGTTATTGAAATGCCTGAAGAGGTGAAGAAACCAAAGAATGCCAGGATGCCCTT
CCATGTTGCCTTAACAGCAACTGATGCTCCCTACAGCAAATGGCAGTGTCGCATTATGTACTACTGGTATAAGAAGAACAGAGACCTGTCTGGGTCGGAG
ATGGGAGGATTTACACGGATTTTGCACTCTGGAAAGCCTGACAACTTGATGGATGAGATGCCTACAGTTGTGGTTGATCCTCTTCCTGCAGGTCTCGATC
GGGGTTACATCGTCCTAAATAGACCATGGGCCTTTGTGCAGTGGCTGGAAAAGACTACCATTGAGGAAGAATATATATTAATGGCAGAGCCTGATCATAT
ACTTGTGAATCCCCTTCCAAATCTAGCACGTGGAGGGTTGCCGGCTGCTTTTCCATTTTTCTATATCGAACCTGCTAAATTCGAAAATATCGTAAGGAAG
TATTATCCAGAGGAGAAGGGTCCTGTGACAGATATCGATCCAATTGGCAACTCTCCTGTAATTATCAAGAAGGAACTTCTGGAAAAGATAGCTCCTAAAT
GGATGAACGTTTCCTTGAAAATGAAAAATGACAAGGAGACTGATAAAGCTTTTGGATGGGTACTAGAAATGTATGCATATGCTGTGGCAGCAGCTTTGAA
CGACGTGCAGCATGTTCTTCGGAAAGATTTTATGCTGCAGCCCCCATGGGATCTGAGCACTAGGAAATTTTTTATCATTCATTATACTTACGGATGTGAC
TACAACTTAAAGGGTCAGCTAACATGTGGAAAAATTGGAGAGTGGAGATTTGACAAGAGATCATATCTACGAGGGCCTCCACCAAAAAACCTCTCCTTGC
CCCCTCCAGGGGTTCCAGAAAGTGTGGTTACCCTCGTAAAGATGGTCAATGAAGCTACTGCTAACATTCCTAATTGGGATGCAGAGTAG
AA sequence
>Potri.003G195600.7 pacid=42784670 polypeptide=Potri.003G195600.7.p locus=Potri.003G195600 ID=Potri.003G195600.7.v4.1 annot-version=v4.1
MGQASSPVLILLAFGFFFATYNLVTMTMHNRSIGKWVYDDSDGEAFFDPVIEMPEEVKKPKNARMPFHVALTATDAPYSKWQCRIMYYWYKKNRDLSGSE
MGGFTRILHSGKPDNLMDEMPTVVVDPLPAGLDRGYIVLNRPWAFVQWLEKTTIEEEYILMAEPDHILVNPLPNLARGGLPAAFPFFYIEPAKFENIVRK
YYPEEKGPVTDIDPIGNSPVIIKKELLEKIAPKWMNVSLKMKNDKETDKAFGWVLEMYAYAVAAALNDVQHVLRKDFMLQPPWDLSTRKFFIIHYTYGCD
YNLKGQLTCGKIGEWRFDKRSYLRGPPPKNLSLPPPGVPESVVTLVKMVNEATANIPNWDAE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G13500 unknown protein Potri.003G195600
[exp]
0 1
AT2G35880 TPX2 (targeting protein for Xk... Potri.016G066600
[exp]
3.16 0.9357
AT5G51710 ATKEA5, KEA5 K+ efflux antiporter 5, ARABID... Potri.012G130500
[exp]
3.46 0.9132 Pt-ATKEA5.1
AT1G11040 HSP40/DnaJ peptide-binding pro... Potri.005G179400
[exp]
5.29 0.9087
AT3G57220 Glycosyl transferase family 4 ... Potri.006G045700
[exp]
5.47 0.9169
AT1G21070 Nucleotide-sugar transporter f... Potri.005G260300
[exp]
5.65 0.9334
AT1G15690 FUGU5, AtVHP1;1... FUGU 5, ARABIDOPSIS THALIANA V... Potri.018G119500
[exp]
10.48 0.9103
AT1G51560 Pyridoxamine 5'-phosphate oxid... Potri.008G006400
[exp]
10.90 0.8839
AT2G36710 Pectin lyase-like superfamily ... Potri.006G120100
[exp]
12.12 0.8445
AT5G27740 RFC3, EMB251, E... replication factor C 3, EMBRYO... Potri.003G093400
[exp]
12.48 0.8699
AT1G73965 CLE13 CLAVATA3/ESR-RELATED 13 (.1) Potri.008G115600
[exp]
13.49 0.8938 CLE12.2

Potri.003G195600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.