Plant FIBer expression Database

Pt-NQR.3 (Potri.003G195700) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-NQR.3
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G27890 296 / 9e-104 NQR NADPH:quinone oxidoreductase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G028000
[exp]
368 / 8e-132 AT3G27890 306 / 1e-107 NADPH:quinone oxidoreductase (.1)
Potri.003G195900
[exp]
257 / 5e-88 AT3G27890 258 / 3e-88 NADPH:quinone oxidoreductase (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026172
[exp]
293 / 3e-102 AT3G27890 267 / 5e-92 NADPH:quinone oxidoreductase (.1)
Lus10039505
[exp]
263 / 2e-90 AT3G27890 257 / 3e-88 NADPH:quinone oxidoreductase (.1)
Lus10039506
[exp]
256 / 1e-87 AT3G27890 247 / 4e-84 NADPH:quinone oxidoreductase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0042 Flavoprotein PF02525 Flavodoxin_2 Flavodoxin-like fold
Representative CDS sequence
>Potri.003G195700.1 pacid=42786523 polypeptide=Potri.003G195700.1.p locus=Potri.003G195700 ID=Potri.003G195700.1.v4.1 annot-version=v4.1
ATGGAAGCAGTGGCATCCAAACCAGTGATCAAAGTCGTAGCCCTTTGCGGGTCTCTACGTAAAGGCTCCTTCAACCGTGGCCTCCTTCGTTCTGCAATTC
AGATAAGTAAGGATTCAGTGAATGGCATGGAGATTGAGTACATAGATATTTCACCACTGCCAATGCTAAACACTGATCTTGAAGTTGATGGTAATTTCCC
ACCTGTTGTTGAAGCTTTCCGGCAGAAGATTCTTCAAGCTGATAGTGTCCTCTTTGCCTCGCCTGAGTACAATTATTCCGTCACCGCACCTTTGAAGAAT
GCAATTGACTGGGCATCTAGACCACCAAACTGCTGGGCTGACAAAGCTGCTGCCATTGTAAGTACCGGAGGAAGTTTTGGTGGTGGGCTAGCACAGTACC
ATCTTCGCCAAATTGGAATTTATCTTGACCTTCATTTCATCAACAAACCCGAGTTTCACTTGAATGCATTTGCACCTCCAGCAAAATTTGACAGCAATGG
AAACTTGATTGATCCACAGTCTAAGGACAGACTGAAGGAAGTTCTTTTAAGCTTGCTTGCTTTCACTTTGCGACTCAAAGGTAACAGCTAA
AA sequence
>Potri.003G195700.1 pacid=42786523 polypeptide=Potri.003G195700.1.p locus=Potri.003G195700 ID=Potri.003G195700.1.v4.1 annot-version=v4.1
MEAVASKPVIKVVALCGSLRKGSFNRGLLRSAIQISKDSVNGMEIEYIDISPLPMLNTDLEVDGNFPPVVEAFRQKILQADSVLFASPEYNYSVTAPLKN
AIDWASRPPNCWADKAAAIVSTGGSFGGGLAQYHLRQIGIYLDLHFINKPEFHLNAFAPPAKFDSNGNLIDPQSKDRLKEVLLSLLAFTLRLKGNS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G27890 NQR NADPH:quinone oxidoreductase (... Potri.003G195700
[exp]
0 1 Pt-NQR.3
AT3G27050 unknown protein Potri.001G329600
[exp]
4.47 0.7640
AT4G33010 ATGLDP1 glycine decarboxylase P-protei... Potri.018G053640
[exp]
5.19 0.7594
Potri.001G280332
[exp]
7.34 0.7199
AT4G32390 Nucleotide-sugar transporter f... Potri.006G252500
[exp]
9.79 0.7509
AT1G07420 SMO2-1, ATSMO1,... Arabidopsis thaliana sterol 4-... Potri.009G037400
[exp]
10.24 0.7474 Pt-SMO2.2
Potri.012G109000
[exp]
10.39 0.6591
AT3G55440 CYTOTPI, ATCTIM... CYTOSOLIC ISOFORM TRIOSE PHOSP... Potri.008G056300
[exp]
11.66 0.7445 CTIMC.1
AT5G39240 unknown protein Potri.017G093000
[exp]
15.65 0.7455
AT3G51510 unknown protein Potri.011G146200
[exp]
19.79 0.7033
AT5G64440 ATFAAH fatty acid amide hydrolase (.1... Potri.005G070300
[exp]
21.21 0.7414

Potri.003G195700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.