Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07960 1094 / 0 PIP5K6 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT3G56960 1025 / 0 PIP5K4 phosphatidyl inositol monophosphate 5 kinase 4 (.1) AT2G41210 1017 / 0 PIP5K5 phosphatidylinositol- 4-phosphate 5-kinase 5 (.1) AT1G77740 729 / 0 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT2G26420 695 / 0 PIP5K3 1-phosphatidylinositol-4-phosphate 5-kinase 3 (.1) AT1G21980 685 / 0 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT3G09920 584 / 0 PIP5K9 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) AT1G60890 580 / 0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT1G10900 550 / 0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT4G01190 242 / 2e-72 ATPIPK10 phosphatidylinositol phosphate kinase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G027900 [exp] 1473 / 0 AT3G07960 1107 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.016G036800 [exp] 1063 / 0 AT3G56960 1214 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Potri.005G172800 [exp] 756 / 0 AT1G21980 1139 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.002G088100 [exp] 754 / 0 AT1G21980 1136 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.004G139900 [exp] 697 / 0 AT1G21980 948 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.019G015768 [exp] 667 / 0 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.006G121200 [exp] 617 / 0 AT3G09920 1230 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Potri.001G211200 [exp] 581 / 0 AT1G60890 1041 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.003G019100 [exp] 547 / 0 AT1G60890 1004 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008651 [exp] 1040 / 0 AT3G07960 990 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10002734 [exp] 1036 / 0 AT3G07960 990 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10039011 [exp] 1032 / 0 AT3G56960 1174 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10027306 [exp] 1028 / 0 AT3G56960 1185 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10010458 [exp] 986 / 0 AT3G56960 1147 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10003819 [exp] 984 / 0 AT3G56960 1148 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10039507 [exp] 865 / 0 AT3G07960 942 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10024151 [exp] 850 / 0 AT3G07960 918 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10018200 [exp] 758 / 0 AT1G21980 1172 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10025636 [exp] 757 / 0 AT1G21980 1170 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF01504 [poplar] [flax] PIP5K Phosphatidylinositol-4-phosphate 5-Kinase CL0251 [poplar] [flax] MORN PF02493 [poplar] [flax] MORN MORN repeat
Representative CDS sequence Show only first row Show all	>Potri.003G196000.1 pacid=42785904 polypeptide=Potri.003G196000.1.p locus=Potri.003G196000 ID=Potri.003G196000.1.v4.1 annot-version=v4.1 ATGAGCAAAGAGAACATTGGCATTGTAAAGGCCTGGGAAGCAAAAGTTAGGAAATCACAAGCAACAAAGAAGAAGAACAAAAACAACAGTGTCTTTCTCA CCATGATGTCAGCAGCAGTAGCTCATGTTGATGATGACGATCCTCCTTGTAAAGAACCTGTAAACCATGCAGAAAAGATCCTTTCTAATGGTGATTTCTA CACAGGCCAATGGCTTGACAACCTCCCTCATGGACATGGAAAATATCTCTGGACAGATGGTTGCATGTATCTCGGCGAATGGTATAAAGGTAAGACAATG GGAAAAGGCAAATTTAGCTGGCCTTCTGGTGCTACTTACGAGGGGGAATTCAAGGGGGGTTATATGGATGGTAGAGGGACCTATACAGGTTCTTCAGGTG ATACTTTTAGAGGTTACTGGGTTATGAATTTGAAACATGGAAATGGTACACAGAGTTATGCTAATGGTGATTATTATGATGGTGATTGGAGAAGAGGGTC ACAAGATGGACACGGAAGGTACCAGTGGAAGAGTTCGAATCATTATATTGGTCAATGGAAGAATGGCTTGATGAATGGTAGTGGAACTATGATTTGGAGC AATGGGAATAGGTATGATGGTTTTTGGCAAGATGGATTGCCCAGAGGAAATGGGAGTTTTAGATGGCCGGATGGAAGTTTTTATGTGGGGTTTTGGAGTA AGGATCCTAAAGAGCAAAATGGGACTTGTTATCCATCTGGGTCTGTGTCAGAGAATTTGGATTGGGATCCTCAAGAGTTGTTTTTGGATTTGAATGATTG CAAGATTGCTACTTGTGAAACGATGTCAATTTTGCCATCACAGAAGATGTTGAGTTGGCCTGGGTTTCTTGATCAAGGGAATGCTAAGCCAGTGAAAAGG AATGGTAATGAAGGAAGGCTCAGGAGGATATCAGTAGATGGGAGGCTGAGTAACTACAGCGTGGCTTCATTGGATAGCTGTGATGTCTCTAGTGGTTGTG GTGATGGGGAATTGAGGGATGTCGAAGAAGGGTTTGGAAACCTTCAGGTTGAAGAATTGGATCCAAAAATATATAAATTGAGAACACAGCCTGTGAAGAA GCAAGGGGAAACAATATCAAAAGGGCATAAGAATTATGAACTAATGCTCAATCTGCAGTTGGGAATAAGACATTCCGTGGGACGGCCTGCTCCAGCTATA TCTCTTGATCTGAAGTCTTCGGCGTTTGACCCCAAAGAAAAAGTATGGACTAAATTTCCACCAGAGGGATCCAAGCACACTCCACCTCACCAGTCTAGCG AGTTCAAATGGAAGGATTACTGTCCTGTAGTTTTCAGGACTCTCCGGAAATTGTTCAATGTGGATGCAGCTGATTACATGTTATCGATATGTGGGAACGA TGCACTTAGGGAGCTCTCATCCCCAGGAAAGAGTGGAAGCTTTTTTTACTTGACAAATGATGATCGCTACATGATAAAGACAATAAAGAAGGCAGAAGTA AAAGTCCTCTTGAGGATGCTGCCAGCCTACTATAATCATGTTCGGGCATTCAAGAACACACTAGTAACCAAATTTTATGGTCTTCATTGTGTGAAACTAA CAGGGCCAAATCAGAAGAAGGTTCGATTTGTCATTATGGGGAATCTGTTTTGTTCTGAGTTTTCTATTCATCGGCGCTTTGACTTGAAAGGTTCTTCCCA TGGCCGCATAACTTCTAAACCTGAGTCAGAAATTGATCCAACAACCACCCTCAAGGACCTTGATCTCAATTACATATTTCGGTTGCAGAAATCTTGGTTC CAAGAGTTTTGCAGGCAAGTGGACAGAGATTGTGACTTCCTTGAACAGGAGAGAATAATGGATTACAGTCTTTTGGTTGGTCTTCACTTTCAAGAAGCTT CATGCAGGGAAGCCCTCACACCTTCTCGTACATCTGGAGTCCGGACCCCCCCTGGAATTCGCACTCCTACTGGAGTTCGGACTCCCACCGGACTTCACAC TCCTACAGGAATTGGAGATGAAAGTGAATCAGGAGCTCCACGCCTTTCAAGAGTGGATTTAGATAAGCTTTTCATGGACCCCTCTCGGCGGGCTTCCATT AAGTTAGGTATAAACATGCCAGCAAGGGTTGCAAAGACCAGAAAAAGAGACTTTGAAGCTCAGCTGATTGGAGAACCAACCGGGGTGTTACATGAAGTCG TCCTATTTTTTGGTATCATAGACATACTACAAGACTATGATATTAGCAAAAAGCTCGAGCACGCATACAAGTCTATGCAGTATGACCCAACTTCAATCTC TGCAGTTGATCCAAAGCAATACTCAAAACGGTTCCGGGATTTCATCTTCAGAGTATTTGCAGAAGACACTTGA
AA sequence Show only first row Show all	>Potri.003G196000.1 pacid=42785904 polypeptide=Potri.003G196000.1.p locus=Potri.003G196000 ID=Potri.003G196000.1.v4.1 annot-version=v4.1 MSKENIGIVKAWEAKVRKSQATKKKNKNNSVFLTMMSAAVAHVDDDDPPCKEPVNHAEKILSNGDFYTGQWLDNLPHGHGKYLWTDGCMYLGEWYKGKTM GKGKFSWPSGATYEGEFKGGYMDGRGTYTGSSGDTFRGYWVMNLKHGNGTQSYANGDYYDGDWRRGSQDGHGRYQWKSSNHYIGQWKNGLMNGSGTMIWS NGNRYDGFWQDGLPRGNGSFRWPDGSFYVGFWSKDPKEQNGTCYPSGSVSENLDWDPQELFLDLNDCKIATCETMSILPSQKMLSWPGFLDQGNAKPVKR NGNEGRLRRISVDGRLSNYSVASLDSCDVSSGCGDGELRDVEEGFGNLQVEELDPKIYKLRTQPVKKQGETISKGHKNYELMLNLQLGIRHSVGRPAPAI SLDLKSSAFDPKEKVWTKFPPEGSKHTPPHQSSEFKWKDYCPVVFRTLRKLFNVDAADYMLSICGNDALRELSSPGKSGSFFYLTNDDRYMIKTIKKAEV KVLLRMLPAYYNHVRAFKNTLVTKFYGLHCVKLTGPNQKKVRFVIMGNLFCSEFSIHRRFDLKGSSHGRITSKPESEIDPTTTLKDLDLNYIFRLQKSWF QEFCRQVDRDCDFLEQERIMDYSLLVGLHFQEASCREALTPSRTSGVRTPPGIRTPTGVRTPTGLHTPTGIGDESESGAPRLSRVDLDKLFMDPSRRASI KLGINMPARVAKTRKRDFEAQLIGEPTGVLHEVVLFFGIIDILQDYDISKKLEHAYKSMQYDPTSISAVDPKQYSKRFRDFIFRVFAEDT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07960		PIP5K6	phosphatidylinositol-4-phospha...		Potri.003G196000 [exp]	0	1
AT1G42430			unknown protein		Potri.005G249700 [exp]	1.00	0.8363
AT5G41761			unknown protein		Potri.002G167900 [exp]	5.29	0.8212
AT3G22970			Protein of unknown function (D...		Potri.010G080600 [exp]	5.65	0.7840
AT1G42430			unknown protein		Potri.002G011300 [exp]	8.24	0.8136
AT4G16130		ATISA1, ARA1	arabinose kinase (.1)		Potri.018G145700 [exp]	9.48	0.8055	Pt-ARA1.1
AT2G26850			F-box family protein (.1)		Potri.006G040000 [exp]	10.95	0.7537
AT5G48385			FRIGIDA-like protein (.1)		Potri.014G175200 [exp]	11.66	0.7649
AT4G37770		ACS8	1-amino-cyclopropane-1-carboxy...		Potri.014G012600 [exp]	14.42	0.7693	ACS1.2,ACS4
AT3G22750			Protein kinase superfamily pro...		Potri.002G049700 [exp]	14.49	0.7932
AT5G63530		ATFP3	ARABIDOPSIS THALIANA FARNESYLA...		Potri.012G101400 [exp]	15.29	0.7522

Compare expression of checked genes

Potri.003G196000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.