Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12330 159 / 7e-47 LRP1 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) AT3G54430 137 / 1e-39 SRS6 SHI-related sequence 6 (.1) AT5G66350 135 / 2e-37 SHI SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) AT1G75520 134 / 8e-37 SRS5 SHI-related sequence 5 (.1) AT3G51060 132 / 4e-36 SRS1, STY1 STYLISH 1, SHI RELATED SEQUENCE 1, Lateral root primordium (LRP) protein-related (.1) AT1G19790 124 / 4e-33 SRS7 SHI-related sequence 7 (.1.2) AT4G36260 119 / 2e-31 SRS2, STY2 STYLISH 2, SHI RELATED SEQUENCE 2, Lateral root primordium (LRP) protein-related (.1) AT2G18120 112 / 9e-30 SRS4 SHI-related sequence 4 (.1) AT2G21400 105 / 7e-28 SRS3 SHI-related sequence3 (.1) AT5G33210 77 / 8e-18 SRS8 SHI-related sequence 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G027700 [exp] 376 / 2e-132 AT5G12330 157 / 4e-46 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) Potri.001G276200 [exp] 179 / 4e-54 AT5G12330 226 / 2e-71 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) Potri.009G070800 [exp] 177 / 2e-53 AT5G12330 231 / 9e-74 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) Potri.005G118200 [exp] 138 / 2e-38 AT3G51060 233 / 6e-74 STYLISH 1, SHI RELATED SEQUENCE 1, Lateral root primordium (LRP) protein-related (.1) Potri.007G017500 [exp] 132 / 2e-36 AT3G51060 238 / 6e-76 STYLISH 1, SHI RELATED SEQUENCE 1, Lateral root primordium (LRP) protein-related (.1) Potri.002G028500 [exp] 130 / 1e-35 AT1G75520 261 / 1e-85 SHI-related sequence 5 (.1) Potri.009G121600 [exp] 121 / 2e-33 AT5G66350 181 / 3e-56 SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) Potri.004G160600 [exp] 120 / 5e-33 AT5G66350 170 / 4e-52 SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) Potri.005G234200 [exp] 122 / 1e-32 AT1G75520 222 / 2e-70 SHI-related sequence 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036032 [exp] 147 / 5e-43 AT5G12330 214 / 2e-68 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) Lus10028352 [exp] 129 / 7e-35 AT3G51060 243 / 4e-78 STYLISH 1, SHI RELATED SEQUENCE 1, Lateral root primordium (LRP) protein-related (.1) Lus10024305 [exp] 124 / 5e-33 AT1G75520 260 / 8e-85 SHI-related sequence 5 (.1) Lus10003416 [exp] 123 / 1e-32 AT1G75520 258 / 6e-84 SHI-related sequence 5 (.1) Lus10041802 [exp] 91 / 2e-21 AT5G66350 150 / 4e-44 SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) Lus10009697 [exp] 86 / 2e-20 AT5G66350 103 / 5e-27 SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) Lus10028794 [exp] 57 / 1e-09 AT5G66350 123 / 5e-34 SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) Lus10017492 [exp] 42 / 0.0002 AT2G21400 120 / 1e-34 SHI-related sequence3 (.1) Lus10041803 [exp] 41 / 0.0002 AT3G51060 88 / 1e-21 STYLISH 1, SHI RELATED SEQUENCE 1, Lateral root primordium (LRP) protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05142 [poplar] [flax] DUF702 Domain of unknown function (DUF702)
Representative CDS sequence Show only first row Show all	>Potri.003G196100.1 pacid=42785505 polypeptide=Potri.003G196100.1.p locus=Potri.003G196100 ID=Potri.003G196100.1.v4.1 annot-version=v4.1 ATGTTAGGCCTTCACAATATTCTCTTTATAGCTCCACCACCATCTTCTTGTCACCACCAGCAGCCACCACACGTTCCCTCTACTCACCAAATAACCAATA CCAATGATCAATATGGCATTGCAGACAATCAAGAGTCTTGGAACACTCTAAAGAAATACCCGCAAGAATCAAGTTTCCTTGAAAGGGGAACTTTAAATGC TCTTCAGGATTGTGATACTGCAATAAATATTGGTCCTGCAAGAGCATGTAGGGACTGTGGAAACAGGGCAAAGAAAGAGTGTCAGTACAGGAGGTGCAGG ACTTGTTGCAAGAGTAGAGGGTATGAGTGTACCACTCACCTGAAGAGCACATGGGTGCCTGCTGCGAGGAGGCGCGAGAGGCTTGGTTATAGTAGCGGCG GCGGCGGCTCCTCTGCTTCTTCTTCTGGTGGTGGCTGTGTTGGTGGTAAAAGACCAAGAGAAAATGTGCCTGCTACATCCAATAGTTTTAGTACTTCTAA TAACAATGCTGCTGCTTCTTTTGTTTTGGATACTGGCTCTAGTTTCCAGGATGCAAGCTTCAAACAGTCCTTACCAGTTCAAGTTCACGCCCCAGCAGTT TTCAGGTGCGTTAGAGTGTCAGCCATTAACAGTGATGAAGCTGAGGTTGCCTATGAAGCTAAGGTGAATATAAGCGGTCATGTTTTCAAGGGCTTTCTTT ATGATCAAGGGATGGATGAGAAAAACCTGTTTCCATGTATTTCAAAAATGCATTCCAGTGAAAGAAATAGAGACTCCTCCTCGCCAATCGTTGATCCACC GGATGCTTACGCAGCCTCTGGCAACCACAGATTGCTTGAAGGTACAAATTGCACCACTTAA
AA sequence Show only first row Show all	>Potri.003G196100.1 pacid=42785505 polypeptide=Potri.003G196100.1.p locus=Potri.003G196100 ID=Potri.003G196100.1.v4.1 annot-version=v4.1 MLGLHNILFIAPPPSSCHHQQPPHVPSTHQITNTNDQYGIADNQESWNTLKKYPQESSFLERGTLNALQDCDTAINIGPARACRDCGNRAKKECQYRRCR TCCKSRGYECTTHLKSTWVPAARRRERLGYSSGGGGSSASSSGGGCVGGKRPRENVPATSNSFSTSNNNAAASFVLDTGSSFQDASFKQSLPVQVHAPAV FRCVRVSAINSDEAEVAYEAKVNISGHVFKGFLYDQGMDEKNLFPCISKMHSSERNRDSSSPIVDPPDAYAASGNHRLLEGTNCTT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G12330		LRP1	LATERAL ROOT PRIMORDIUM 1, Lat...		Potri.003G196100 [exp]	0	1
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Potri.002G037500 [exp]	3.16	0.7158
AT5G63530		ATFP3	ARABIDOPSIS THALIANA FARNESYLA...		Potri.012G101400 [exp]	3.74	0.7411
AT1G33055			unknown protein		Potri.001G452500 [exp]	4.24	0.7112
AT3G21710			unknown protein		Potri.001G419400 [exp]	4.89	0.6962
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Potri.018G145800 [exp]	6.48	0.6951	Pt-CSARF2.3
AT3G22440			FRIGIDA-like protein (.1)		Potri.008G153000 [exp]	7.48	0.7078
AT1G24625	C2H2ZnF	ZFP7	zinc finger protein 7 (.1)		Potri.001G298700 [exp]	10.48	0.7002
AT1G21920			Histone H3 K4-specific methylt...		Potri.002G085900 [exp]	17.86	0.6142
AT1G75810			unknown protein		Potri.002G020200 [exp]	18.00	0.6748
AT1G28260			Telomerase activating protein ...		Potri.011G053800 [exp]	25.49	0.6744

Compare expression of checked genes

Potri.003G196100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.