Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54440 1651 / 0 glycoside hydrolase family 2 protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G027400 [exp] 2029 / 0 AT3G54440 1628 / 0.0 glycoside hydrolase family 2 protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024155 [exp] 1659 / 0 AT3G54440 1594 / 0.0 glycoside hydrolase family 2 protein (.1.2.3) Lus10039520 [exp] 967 / 0 AT3G54440 968 / 0.0 glycoside hydrolase family 2 protein (.1.2.3) Lus10039519 [exp] 634 / 0 AT3G54440 567 / 0.0 glycoside hydrolase family 2 protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF00703 [poplar] [flax] Glyco_hydro_2 Glycosyl hydrolases family 2 CL0058 [poplar] [flax] Glyco_hydro_tim PF02836 [poplar] [flax] Glyco_hydro_2_C Glycosyl hydrolases family 2, TIM barrel domain CL0202 [poplar] [flax] GBD PF02837 [poplar] [flax] Glyco_hydro_2_N Glycosyl hydrolases family 2, sugar binding domain CL0103 [poplar] [flax] Gal_mutarotase PF02929 [poplar] [flax] Bgal_small_N Beta galactosidase small chain CL0159 [poplar] [flax] E-set PF16353 [poplar] [flax] DUF4981 Domain of unknown function (DUF4981)
Representative CDS sequence Show only first row Show all	>Potri.003G196500.1 pacid=42785152 polypeptide=Potri.003G196500.1.p locus=Potri.003G196500 ID=Potri.003G196500.1.v4.1 annot-version=v4.1 ATGGCTTCTTTGGTAGCACAACTGGTGTCTCCAGTGGAAACTGGACATAAAGTTTGGCAAGACCAGGCTTTTATTAAGTGGAGAAAGAGAGATCCTCATG TCACTTTGCACTGCCATGAATCTGTTGAAGGATCTCTTAGATACTGGTATCAACGCAACAAAGTGGATCATTTGGTATCTAAATCTGCTGTTTGGAATGA TGATGCTGTTCAAGGGGCTCTTGATTCTGCAGCCTTTTGGGTTAAGGATTTGCCTTTTGTTAAATCTTTGTCTGGCTTTTGGAGATTTTTCTTGGCTCCT GGCCCTGACAGTGTTCCTAAGAAATTTTATGACGCTGAATTTGAGGACTCAGAGTGGAACACTTTGCCTGTTCCTTCAAATTGGGAATTGCATGGATACG ATCGGCCTATTTATGCCAATGTATTATATCCATTTCCAGTAGATCCTCCTCGTGTTCCTGATGATAATCCTACTGGATGCTACCGAACATACTTTGACCT TCCTCAGGGGTGGCAAGATCGAAGGATTTTCTTGCATTTTGAAGCTGTTGATTCAGCATTCTGTGCTTGGATAAATGGGGTTGCTGTGGGATACAGTCAG GATAGTAGGCTACCTGCCGAGTTTGAAATTACAGATTACTGTTATCCATGTGGTTCTGGCAAGAAGAATCTTTTAGCCGTTCAAGTCTTTAGATGGAGTG ATGGGTCTTACCTTGAAGATCAAGACCATTGGTGGATGTCAGGTATTCACAGAGACGTGCTTCTTCTTTCCAAGGCTCAGGTATTCATTGCAGACTACTT TTTCAAATCAAATCTGGCCGAGAATTTTACTTCTGCAGATATAGAGGTTGAAGTGAAAATAGAAAGTGCTCTAGAAATTCCTAGAGACAAAATTTTTGAC AACTTTACCATAGAAGCTGCATTATATGACACCGGAAGCTGGTACAACAGTGAAGAATCTCCTGATCTGCTTTCATCCAATGTGGCCAATTTAAAGCTCA CTCACTCCCCTATGGGAATTCTAGGATTTCTGGGTAATTTCCTTGAAGGGAAACTCGAAAAGCCCAAGCTTTGGTCTGCAGAGCAGCCAAACTTGTACAT TCTTGTTCTCTCCCTCAAAGATGCAACTGGGCAAGTAGTTGACTGTGAATCATGCCTAGTAGGCATAAGACAAATATCAAAGGCTCCAAAACAGCTACTT GTTAACGGGTGTCCAGTTATAATAAGAGGTGTGAACAGGCACGAACATCATCCACGTGTGGGGAAGACAAATATAGAGTCGTGTATGATTAAGGATCTGG TTCTAATGAAGCAAAACAATATGAATGCTGTGAGGAACAGTCATTATCCCCAACATCCTCGTTGGTATGAGTTGTGCGATCTTTTTGGCTTGTATATGAT AGATGAAGCCAACATTGAGACACATGGTTTTCATCTTTGCGAACATCTGAAGCATCCTACTCAGGAACAAAGTTGGGCTGCTGCAATGATGGATCGTGTG ATAAGCATGGTGGAGAGGGACAAAAATCATGCATGCATAATTTCTTGGTCTTTAGGAAATGAGTCCTCATATGGACCTAATCATTCTGCTGCAGCCGGTT GGATTCGTGAAAGGGACCCCTCACGGCTGGTGCACTATGAAGGAGGTGGATCCAGAACGGCATCCACTGACATCATCTGCCCGATGTATATGCGTGTTTG GGACATAGTGAAGATTGCAAAAGACCCAACTGAACCACGCCCTTTGATATTGTGCGAGTATTCACATGCAATGGGGAATAGCAGTGGGAATATACGTGAA TATTGGGACGCAATTGATAGCACATTTGGTCTCCAAGGCGGCTTTATCTGGGAGTGGGTTGACCAGGCGTTATTGAAGGAAAGTGGAGATGGTAGAAAAC ACTGGGCTTATGGAGGTGACTTTGGGGATACACCTAATGATCTGAACTTTTGTCTTAATGGTCTTACATGGCCAGATCGCACTCCTCATCCTGCATTAGA AGAAGTTAAGTATGTTTATCAGCCAATCAAAGTTTCACTAGAGGAAAGCACAATAAAGATAACCAACACCCATTTCTTTCAAACTACACAAGGTTTAGAG TTTAGCTGGACTGTCCACGGTGATGGATATGAATTTGGATCTGGAATTCTCTCTCTTCCACTGACAGAACCTCAGAGCAGTTACAAGTTAGAATGGCAGT CAGGTCCATGGTATCCTCTATTGGCTTCATCTTTTGCAGAAGAAATTTTTGTAACAATAACTACTAGACTCCTGCATTCCACACGTTGGGTTGAAGCTGG TCATGTTATTTCATCTACACAAATCCAGTTGCCTACCAGACAAAAGATCATGCCTCATATTATCAAAACTACCGATGCTAAAGTCTTTAGTGAAACTCTT GGAGATACAGTTAGAGTTAGCCAGCTGAACGTTTGGGAGATAACATGGAACATTCAGACTGGAAGTATTGAAAGCTGGAAGGTTGGAGGAGTTCCTGTTA TAAAGGAAGGCATAATCCCATGCTTCTGGAGAGCACCTACAGATAATGACAAAGGTGGAGAAAAAGACAGTTATTACTCCCGGTGGAAAGCAGCTGGTAT TGATAGCCTTGTATTTCAGACAAAAAGTTGTTCTGTGAAGAGCACAACCGACAATCTTGTGAAAATAGAGGTCATTTATGTTGGTGTCCCAAGTTGTGAG GAACGCTCCTTATCTGAATCTACAAATGCAACAGCTTTAATCACAGTTAATATGATCTACACAATTTATAGTTCTGGGGACTTGATTATTGAATGCAGTG CAATTCCAAGTTCTGAGCTTCCACCTTTGCCTCGAGTGGGAGTTGAATTGCACTTGGAAAAATCAGTGGATCAGATTAAATGGTATGGAAGAGGGCCATT TGAATGTTATCCAGATAGAAAAGCAGCAGCCCATGTTGGGGTCTATGAGCAGAATGTGGGTGACATGCATGTTCCTTACATTGTCCCTGGAGAATGTTCT GGTAGAGCAGATGTTAGATGGGTGACATTTCAGAACAAGGATGGAGTAGGCATATTTGCTTCAACTTATGGCAGCTCCCCACCTATGCAAATGAGTGCTA GTTACTACTTCACAGCAGAACTTGACCGAGCGACACACCACGAAGAACTCGTTCAAGGAAATGATATTGAGGTGCATCTTGACCACAAACATATGGGATT GGGTGGAGATGATAGCTGGTCACCATGTGTCCATGACAAGTATCTAGTTCCTGCTGTGCCGTGCTCCTTTTCTATCAGGTTGTGTCCAATTACTGCAGCT ACATCTGGCCTTGAGATATACAAATCCCAGTTTCAGAACTAA
AA sequence Show only first row Show all	>Potri.003G196500.1 pacid=42785152 polypeptide=Potri.003G196500.1.p locus=Potri.003G196500 ID=Potri.003G196500.1.v4.1 annot-version=v4.1 MASLVAQLVSPVETGHKVWQDQAFIKWRKRDPHVTLHCHESVEGSLRYWYQRNKVDHLVSKSAVWNDDAVQGALDSAAFWVKDLPFVKSLSGFWRFFLAP GPDSVPKKFYDAEFEDSEWNTLPVPSNWELHGYDRPIYANVLYPFPVDPPRVPDDNPTGCYRTYFDLPQGWQDRRIFLHFEAVDSAFCAWINGVAVGYSQ DSRLPAEFEITDYCYPCGSGKKNLLAVQVFRWSDGSYLEDQDHWWMSGIHRDVLLLSKAQVFIADYFFKSNLAENFTSADIEVEVKIESALEIPRDKIFD NFTIEAALYDTGSWYNSEESPDLLSSNVANLKLTHSPMGILGFLGNFLEGKLEKPKLWSAEQPNLYILVLSLKDATGQVVDCESCLVGIRQISKAPKQLL VNGCPVIIRGVNRHEHHPRVGKTNIESCMIKDLVLMKQNNMNAVRNSHYPQHPRWYELCDLFGLYMIDEANIETHGFHLCEHLKHPTQEQSWAAAMMDRV ISMVERDKNHACIISWSLGNESSYGPNHSAAAGWIRERDPSRLVHYEGGGSRTASTDIICPMYMRVWDIVKIAKDPTEPRPLILCEYSHAMGNSSGNIRE YWDAIDSTFGLQGGFIWEWVDQALLKESGDGRKHWAYGGDFGDTPNDLNFCLNGLTWPDRTPHPALEEVKYVYQPIKVSLEESTIKITNTHFFQTTQGLE FSWTVHGDGYEFGSGILSLPLTEPQSSYKLEWQSGPWYPLLASSFAEEIFVTITTRLLHSTRWVEAGHVISSTQIQLPTRQKIMPHIIKTTDAKVFSETL GDTVRVSQLNVWEITWNIQTGSIESWKVGGVPVIKEGIIPCFWRAPTDNDKGGEKDSYYSRWKAAGIDSLVFQTKSCSVKSTTDNLVKIEVIYVGVPSCE ERSLSESTNATALITVNMIYTIYSSGDLIIECSAIPSSELPPLPRVGVELHLEKSVDQIKWYGRGPFECYPDRKAAAHVGVYEQNVGDMHVPYIVPGECS GRADVRWVTFQNKDGVGIFASTYGSSPPMQMSASYYFTAELDRATHHEELVQGNDIEVHLDHKHMGLGGDDSWSPCVHDKYLVPAVPCSFSIRLCPITAA TSGLEIYKSQFQN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54440			glycoside hydrolase family 2 p...		Potri.003G196500 [exp]	0	1
AT2G01080			Late embryogenesis abundant (L...		Potri.001G208000 [exp]	2.44	0.8358
AT4G20800			FAD-binding Berberine family p...		Potri.001G459500 [exp]	2.64	0.8140
AT1G15290			Tetratricopeptide repeat (TPR)...		Potri.003G031000 [exp]	2.82	0.8109
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Potri.003G194600 [exp]	5.29	0.8204
AT4G09020		ATISA3, ISA3	isoamylase 3 (.1)		Potri.002G100900 [exp]	7.21	0.7830
AT3G51660			Tautomerase/MIF superfamily pr...		Potri.006G104800 [exp]	9.79	0.7720
AT1G80070		EMB33, EMB177, ...	ABNORMAL SUSPENSOR 2, EMBRYO D...		Potri.003G031900 [exp]	10.14	0.8360	Pt-EMB177.4
AT5G46190			RNA-binding KH domain-containi...		Potri.011G082500 [exp]	15.68	0.8287
AT5G20030			Plant Tudor-like RNA-binding p...		Potri.005G216200 [exp]	23.66	0.7927
AT3G18370		NTMCTYPE3, ATSY...	C2 domain-containing protein (...		Potri.015G046700 [exp]	24.00	0.7761

Compare expression of checked genes

Potri.003G196500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.