Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29050 663 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70110 619 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 597 / 0 RLK receptor lectin kinase (.1) AT4G02420 587 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 585 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 572 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT2G43700 563 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G59700 557 / 0 LECRK1, ATHLECRK LECTIN-RECEPTOR KINASE 1, lectin-receptor kinase (.1) AT1G70130 551 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G59740 535 / 0 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G088600 [exp] 648 / 0 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.006G088900 [exp] 647 / 0 AT2G37710 801 / 0.0 receptor lectin kinase (.1) Potri.006G088680 [exp] 647 / 0 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.006G088400 [exp] 643 / 0 AT2G37710 800 / 0.0 receptor lectin kinase (.1) Potri.006G088648 [exp] 634 / 0 AT2G37710 710 / 0.0 receptor lectin kinase (.1) Potri.006G088632 [exp] 623 / 0 AT2G37710 770 / 0.0 receptor lectin kinase (.1) Potri.009G035500 [exp] 598 / 0 AT3G53810 598 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036300 [exp] 597 / 0 AT3G53810 630 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088801 [exp] 597 / 0 AT3G53810 662 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003224 [exp] 617 / 0 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10035627 [exp] 606 / 0 AT2G37710 755 / 0.0 receptor lectin kinase (.1) Lus10008597 [exp] 595 / 0 AT3G53810 771 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029315 [exp] 586 / 0 AT3G53810 758 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 566 / 0 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016506 [exp] 564 / 0 AT3G53810 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 561 / 0 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040773 [exp] 558 / 0 AT3G53810 654 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001562 [exp] 553 / 0 AT3G53810 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004982 [exp] 553 / 0 AT3G53810 664 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0004 [poplar] [flax] Concanavalin PF00139 [poplar] [flax] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Potri.003G196600.1 pacid=42784951 polypeptide=Potri.003G196600.1.p locus=Potri.003G196600 ID=Potri.003G196600.1.v4.1 annot-version=v4.1 ATGAATCGAATCCTTGAAACCATGTTCTACAAATGCCATGTGGGAATATTTTTGCTCATGATCAAAGTTGCAGCTTCGATTGAAAATGGTTTTGTCTTCA ATGGAAATTTCGATCTAGGTGGTGTAGCTGAGCTCTCTCAAAAGGGTCTCTTCAGGCTCACTAACTCCTCAACATTTGGTATTGGCCGTGCTTTCTTTTC TCAGCCACTGAGCTTCAAGAATTCATCGAACGGTACCTCAGTCTCCTTTTCTACCACTTTCGTATTTGCCTTCGTCGTTGATCAAGGGCGTCTCCCTGGT CATGGGATGGCCTTTATGATCGCACCTTCGAAGAACTTAACTGGAGCTTCATCAGCTCAACATTTGGGCTTATTTAACCTCACAAATAATGGAGACCCGT CAAATCATGTAGTGGCCATTGAGCTAGACACGTTCCAAAATCAAGAGTTCAATGACATCAATGGTAACCATGTTGGCATCGACGTCAACAGCTTAGAATC AGTCAAATCTGCCCCTGCAGGTTATTTCGATAATGAAAATAGGGAATTCAAGAATCTTGTTCTTTCTAGTGGAGAACCAATGCAGGCTTGGGTGGAATAT GATGCCCCAGAAACTCAACTTAATGTGACTTTAGCTCCAATCCATACAGGTAAGCCAGACCTCCCCCTTTTGTCTTTGAACATAGATATTTCACCGATCA TTTTAGAGCAAATGTATGTGGGGTTTTCTTCCTCAACCGGCCAACTAGTACAATCTCATTATGTTTTGGGTTGGAGCTTTCGGCTTGATGGGAAAGCCCC AGAACTTGATCTTTCACAGCTTCCATCTTTTAGTGGTGAAGAACAACCCCAGAGGAAAGAAAGGGAATTGGTTGTCGGGTTGTCCGCAACCGGAGTAGTC CTGTTGATCATAGTTACAATCTCCATCAGCATCATCCTTTGGAGGAGAAAAAAGGCTCAATTCACTGAGATACTAGAAGATTGGGAGGTGCAGTATAGAT CTCATAGATTCTCGTACAAGGACTTGTTTGAGGCCACCAAAGGTTTTTGCGAAACGGAGCTTCTCGGAAAAGGAGGTTTTGGAAAAGTATATAGAGGTGT TTTGCCTGGGTCAAATGTCCAGGTTGGAGTAAAGAGAATCTCTCACAATTCCAAACAAGGAATGAAAGAATTTGTTGCAGAGATTGGCACCATTGGTCAG CTGCGACACCCCAACTTGGTTCGAGTTCTCGGCTATTGTCGAGGCAAAGAGGAGCTCATTCTGGTCTATGATTACATGCCTAATGGCAGTCTTGACAAGT TCCTCTATAACAAGACTGAGTTCATTCTTAATTGGAATCAAAGGTTTAAAATAATCAAAGATGTAGCATTAGCACTCACATATTTGCATGAAGAATGGGC AGAAGTTATCATTCACAGAGATATCAAGGCTAGCAATGTGTTGTTAGATGCTGAATTAAATGCTAAACTTGGTGATTTCGGACTTGCAAGATGCATCAAA CACGAGCAGGATATTCAAACCACTCATGTTGCTGGCACATTAGGCTACATTGCACCTGAGCTTGCTAGAAGTGGCAAACCAACTCCAAGCACAGATGTTT ATGCATTTGGGGCATTCTGCTTGGAGGTTGCTTGTGGTAGAAGACCGGTGGAGCCAAAAACATCAGCGAAGGAGATGATTCTGGTGGATTGGGTTTACAG CTTTTGGATGGAAGGGAAGATCTTGAGTGCAACGGATCCTAAACTCAATGAAGAATGCAAAGCTGAGGAAGTTGAACTGGTTTTGAAACTTGGACTGCTC TGCTCACATAGTGTGGCAGAGGGCAGACCAAAAATGTCTCAAGTTCTGATGTACCTTAAAGGTCAAGCTTTACTCCCTGAAAATCTGAATGCTCATGTCA AGGCACAGGAAGGAAGAGGAGAGTCTGAAAATCATGCCATATTGTGTTACTCTACACCATCTCTAACAATCACCCATTCTCTCATGTACACAGGTCGTTG A
AA sequence Show only first row Show all	>Potri.003G196600.1 pacid=42784951 polypeptide=Potri.003G196600.1.p locus=Potri.003G196600 ID=Potri.003G196600.1.v4.1 annot-version=v4.1 MNRILETMFYKCHVGIFLLMIKVAASIENGFVFNGNFDLGGVAELSQKGLFRLTNSSTFGIGRAFFSQPLSFKNSSNGTSVSFSTTFVFAFVVDQGRLPG HGMAFMIAPSKNLTGASSAQHLGLFNLTNNGDPSNHVVAIELDTFQNQEFNDINGNHVGIDVNSLESVKSAPAGYFDNENREFKNLVLSSGEPMQAWVEY DAPETQLNVTLAPIHTGKPDLPLLSLNIDISPIILEQMYVGFSSSTGQLVQSHYVLGWSFRLDGKAPELDLSQLPSFSGEEQPQRKERELVVGLSATGVV LLIIVTISISIILWRRKKAQFTEILEDWEVQYRSHRFSYKDLFEATKGFCETELLGKGGFGKVYRGVLPGSNVQVGVKRISHNSKQGMKEFVAEIGTIGQ LRHPNLVRVLGYCRGKEELILVYDYMPNGSLDKFLYNKTEFILNWNQRFKIIKDVALALTYLHEEWAEVIIHRDIKASNVLLDAELNAKLGDFGLARCIK HEQDIQTTHVAGTLGYIAPELARSGKPTPSTDVYAFGAFCLEVACGRRPVEPKTSAKEMILVDWVYSFWMEGKILSATDPKLNEECKAEEVELVLKLGLL CSHSVAEGRPKMSQVLMYLKGQALLPENLNAHVKAQEGRGESENHAILCYSTPSLTITHSLMYTGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29050			Concanavalin A-like lectin pro...		Potri.003G196600 [exp]	0	1
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Potri.017G093700 [exp]	1.00	0.9347
AT2G41180		SIB2	sigma factor binding protein 2...		Potri.013G043800 [exp]	2.44	0.8906
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Potri.001G112100 [exp]	3.16	0.9020
AT5G25930			Protein kinase family protein ...		Potri.006G235450 [exp]	3.46	0.8904
AT3G01320		SNL1	SIN3-like 1 (.1.2)		Potri.001G316300 [exp]	6.48	0.8826
AT4G06536			SPla/RYanodine receptor (SPRY)...		Potri.014G025000 [exp]	6.92	0.8824
AT5G38210			Protein kinase family protein ...		Potri.017G118100 [exp]	7.74	0.8871
AT1G43910			P-loop containing nucleoside t...		Potri.007G019600 [exp]	9.00	0.8773
AT5G63970			Copine (Calcium-dependent phos...		Potri.005G065700 [exp]	9.16	0.8711
AT4G39955			alpha/beta-Hydrolases superfam...		Potri.005G074066 [exp]	10.09	0.8500

Compare expression of checked genes

Potri.003G196600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.