Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72680 469 / 9e-167 ATCAD1 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) AT4G39330 326 / 3e-110 AtCAD1, ATCAD9 cinnamyl alcohol dehydrogenase 9 (.1.2) AT2G21730 323 / 6e-109 CAD2, ATCAD2 cinnamyl alcohol dehydrogenase homolog 2 (.1) AT2G21890 322 / 2e-108 CAD3, ATCAD3 cinnamyl alcohol dehydrogenase homolog 3 (.1) AT4G37970 316 / 2e-106 ATCAD6 cinnamyl alcohol dehydrogenase 6 (.1) AT4G37980 301 / 1e-100 ELI3-1, ATCAD7 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) AT4G37990 286 / 7e-95 CAD-B2, ATCAD8, ELI3-2 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) AT3G19450 265 / 2e-86 CAD-C, ATCAD4 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT4G34230 253 / 6e-82 CAD-5, ATCAD5, CAD-D, CAD6 cinnamyl alcohol dehydrogenase 5 (.1.2) AT5G51970 77 / 1e-15 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G148100 [exp] 493 / 4e-176 AT1G72680 571 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) Potri.006G024300 [exp] 488 / 3e-174 AT1G72680 521 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) Potri.011G148200 [exp] 483 / 3e-172 AT1G72680 561 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) Potri.016G023360 [exp] 478 / 2e-170 AT1G72680 492 / 1e-175 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) Potri.016G023300 [exp] 477 / 8e-170 AT1G72680 489 / 1e-174 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) Potri.006G024250 [exp] 468 / 3e-166 AT1G72680 452 / 4e-160 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) Potri.001G307200 [exp] 341 / 3e-116 AT4G39330 572 / 0.0 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.016G078300 [exp] 324 / 1e-109 AT4G37970 482 / 2e-171 cinnamyl alcohol dehydrogenase 6 (.1) Potri.006G199100 [exp] 323 / 3e-109 AT4G37980 506 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010149 [exp] 492 / 8e-176 AT1G72680 550 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) Lus10017354 [exp] 481 / 6e-171 AT1G72680 539 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) Lus10002089 [exp] 306 / 2e-102 AT4G39330 577 / 0.0 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10023268 [exp] 305 / 3e-102 AT4G37980 471 / 1e-167 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Lus10035956 [exp] 302 / 7e-101 AT4G37990 509 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Lus10025706 [exp] 302 / 9e-101 AT4G37990 509 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Lus10019811 [exp] 301 / 2e-100 AT3G19450 531 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10014104 [exp] 300 / 3e-100 AT3G19450 530 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10017285 [exp] 295 / 7e-98 AT4G39330 413 / 1e-144 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10005611 [exp] 294 / 1e-97 AT4G39330 409 / 9e-143 cinnamyl alcohol dehydrogenase 9 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00107 [poplar] [flax] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [poplar] [flax] GroES PF08240 [poplar] [flax] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Potri.003G196700.2 pacid=42787427 polypeptide=Potri.003G196700.2.p locus=Potri.003G196700 ID=Potri.003G196700.2.v4.1 annot-version=v4.1 ATGAGTTCCTTTCAAGAGGGAAAGGACTGCCTTGGGTGGGCAGCAAGAGATGCCTCTGGAGTTCTGTCACCTTACCATTTTAAGCGAAGGGCAATCGGTG CTGATGACATTTCAGTGAAGATTACATACTGTGGAATATGTTATGGTGACATAGTTTATACCAGGAACAAACATGAAGACTCAAAATATCCTGTAGTTCC AGGACATGAGATTGCTGGAATCGTGAAAGAAGTAGGCTCCAATGTCCAGCGCTTCAAAACTGGTGACCCTGTTGGAGTGGGAACATATATTAATTCATGC AGAAATTGTGATGAATGTAATGAAGGGCTAGAAGTGCAGTGCCCAAATGGAATGGTTCCCACAATTAATGCTGTGGATGTAGATGGTACAATCACAAAGG GAGGATACTCTAGTTTCATTGTTGTTCATGAAAGGTACTGCTACAAGATACCTGAAAACTACCCTTTAGCTCTAGCAGCACCTTTGCTTTGTTCAGGAAT TACTGTTTACACTCCCATGATCCACTACAAGATGAACCAACCTGGTAAATCTCTAGGGGTGATCGGGCTAGGAGGCCTTGGTCACATGGCAGTGAAGTTT GGCAAAGCTTTTGGACTGAATGTAACAGTTTTCAGTACAAGTATATCCAAGAAAGAGGAAGCCTTGAATGTCCTTGGAGCAGACAAATTTATTGTCTCGA CTGATGAGGAAGAAATGAAGACCTTGTCTAGAACTTTGGACTTCATAATTGACTCAGCATCAGGAGATCATCCATTCGATCCATACATGTCCCTCCTGAA GACTAATGGCCTGTTCGTCATGGTGTGCTATCCAAAAGAAGTTAAACTCGATCCTCTGAGCCTTTTTACAGGTATGAGATCGATTACTGGAAGTTTCACT GGTGGGACGAAATTGACACAAGAAATGTTGGAGTTCTGTGCTGCCCACAAAATATATCCGGAGATCGAAGTGATACCAATTGAATACGCTTATGAAGCCT TTGAGAGGATGTTGAAGGGAGATGTCAAGTATCGATTTGTGATCGACATCGAGAACTCTTTGAAGTGA
AA sequence Show only first row Show all	>Potri.003G196700.2 pacid=42787427 polypeptide=Potri.003G196700.2.p locus=Potri.003G196700 ID=Potri.003G196700.2.v4.1 annot-version=v4.1 MSSFQEGKDCLGWAARDASGVLSPYHFKRRAIGADDISVKITYCGICYGDIVYTRNKHEDSKYPVVPGHEIAGIVKEVGSNVQRFKTGDPVGVGTYINSC RNCDECNEGLEVQCPNGMVPTINAVDVDGTITKGGYSSFIVVHERYCYKIPENYPLALAAPLLCSGITVYTPMIHYKMNQPGKSLGVIGLGGLGHMAVKF GKAFGLNVTVFSTSISKKEEALNVLGADKFIVSTDEEEMKTLSRTLDFIIDSASGDHPFDPYMSLLKTNGLFVMVCYPKEVKLDPLSLFTGMRSITGSFT GGTKLTQEMLEFCAAHKIYPEIEVIPIEYAYEAFERMLKGDVKYRFVIDIENSLK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72680		ATCAD1	CINNAMYL ALCOHOL DEHYDROGENASE...		Potri.003G196700 [exp]	0	1
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Potri.006G101100 [exp]	5.47	0.9918
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Potri.007G118600 [exp]	7.61	0.9914
AT1G66760			MATE efflux family protein (.1...		Potri.017G120600 [exp]	8.83	0.9820
AT3G11840		PUB24	plant U-box 24 (.1)		Potri.009G016100 [exp]	9.48	0.9913
AT5G40670			PQ-loop repeat family protein ...		Potri.017G070401 [exp]	10.81	0.9023
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Potri.006G101200 [exp]	11.13	0.9911
AT4G37290			unknown protein		Potri.007G049400 [exp]	11.83	0.9874
AT1G68620			alpha/beta-Hydrolases superfam...		Potri.008G118400 [exp]	12.44	0.9909
					Potri.007G014501 [exp]	13.63	0.9906
					Potri.017G120650 [exp]	14.73	0.9906

Compare expression of checked genes

Potri.003G196700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.