Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 257 / 6e-76 disease resistance family protein / LRR family protein (.1) AT2G32660 221 / 1e-64 AtRLP22 receptor like protein 22 (.1) AT5G40170 213 / 2e-60 AtRLP54 receptor like protein 54 (.1) AT2G33060 206 / 7e-58 AtRLP27 receptor like protein 27 (.1) AT4G13810 202 / 1e-56 AtRLP47 receptor like protein 47 (.1.2) AT2G32680 203 / 2e-56 AtRLP23 receptor like protein 23 (.1) AT1G74170 196 / 7e-54 AtRLP13 receptor like protein 13 (.1) AT2G33020 194 / 3e-53 AtRLP24 receptor like protein 24 (.1) AT2G33050 193 / 3e-53 AtRLP26 receptor like protein 26 (.1) AT4G13920 193 / 6e-53 AtRLP50 receptor like protein 50 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G043800 [exp] 378 / 1e-121 AT2G34930 383 / 7e-119 disease resistance family protein / LRR family protein (.1) Potri.015G025300 [exp] 376 / 6e-119 AT2G34930 314 / 1e-91 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 372 / 2e-118 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 371 / 3e-118 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 370 / 1e-117 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 369 / 2e-117 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) Potri.015G024500 [exp] 369 / 1e-115 AT2G34930 315 / 7e-92 disease resistance family protein / LRR family protein (.1) Potri.015G025100 [exp] 365 / 2e-115 AT2G34930 361 / 3e-109 disease resistance family protein / LRR family protein (.1) Potri.001G262800 [exp] 354 / 3e-111 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002742 [exp] 476 / 5e-158 AT1G58190 399 / 6e-124 receptor like protein 9 (.1.2) Lus10016340 [exp] 473 / 1e-156 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10002743 [exp] 471 / 9e-156 AT2G34930 476 / 6e-153 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 472 / 1e-155 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10039531 [exp] 470 / 1e-155 AT2G34930 485 / 2e-156 disease resistance family protein / LRR family protein (.1) Lus10016326 [exp] 470 / 2e-155 AT2G34930 456 / 2e-145 disease resistance family protein / LRR family protein (.1) Lus10002753 [exp] 468 / 3e-155 AT2G34930 389 / 2e-120 disease resistance family protein / LRR family protein (.1) Lus10039512 [exp] 467 / 9e-155 AT2G15080 379 / 2e-116 receptor like protein 19 (.1.2) Lus10001034 [exp] 462 / 2e-154 AT2G34930 360 / 1e-110 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 462 / 1e-152 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Potri.003G196766.1 pacid=42786383 polypeptide=Potri.003G196766.1.p locus=Potri.003G196766 ID=Potri.003G196766.1.v4.1 annot-version=v4.1 ATGGATATTTCTCACAATTTATTTCAGGGTGAAGTTTCTGAAGTTCACTTTGCAAACCTCAAAAATTTGAGAAACTTTTCTGCTGCCGGAAACCAGCTGA ATTTGAGAGTAAGTCCTGATTGGATTCCTCCTCAACTTGTGTTCATTGATTTGAGATCTTGGAATGTTGGGCCTCAATTCCCCAAGTGGGTTCGTCCACT TGAGCATTTGTCATATTTGGATATCTCTAACTCGAGTATTTCGAGTACTATTCCTATTTGGTTTTGGACCATGTCATTTCGAATGGAGTATTTAAATCTC TCCCACAATCAAATCCAAGGGGTGATTCCCAGTAAACTCAAGCTTGATTTTACTGCTTCCTACCCTTTAGTCGACTTGAGCTCGAATCAATTCAAGGGTC CATTACCAAGTATATTCTCTAATGTGGGTGCATTAGATCTCTCCAACAATTCATTTTCAGGTTCCATGCTCAACTTCTTATGCCATAAGATAGATGAGTT GAAGAATATGCAAGTTCTTAACCTCGGAGAGAATCTTTTATCTGGAGTGATACCAGATTGTTGGTCGAGCTGGCAATATTTGGTGGCGATAAAATTGAGC AACAACAAACTCAGTGGCAACATTCCTGATTCCATTGGAGCTTTGAGCTTGCTTGAGTCATTGCACATTCGCAACAGCAGCCTATCAGGTAAACTACCAA TTTCGTTGAAAAATTGTACGAAGTTGATCACACTTGATGTTGCTGAAAATGAATTAGTCGGAAGCATGCCAGCATGGATTGGAAAGAGGTTCTCAAGCAT GGTTGTCCTCAACATGCGAGCAAACAAGTTTCATGGCCGCATACCGAGAGAGCTATGCAATCTAGCTTCTTTACAAATCCTGGACCTTGCTCATAATCGC CTCTCGTGGAGTATACCAACTTGTTTCAATAAACTCAGTGCCATGGCTACAAGAAACGATTCTCTTGGAAAGATTTATTTGGACAGTGGATCGTCTACCT TTGACAATGTGCTTCTTGTGATGAAAGGAAAAGTTGTCGAGTACAGTACTATTCTTAAATTCGTAAGGAGCATCGACCTTTCCAGCAATGCTTTATGTGG GGAGATTCCTGAGGAAGTTACACGTCTCAGTGAATTACAATCTTTGAATCTATCCCAAAATTCCTTGACAGGAAGAATTCCTGAAGGCATAGGTTCCCTT CGATATTTGGAATCCATGGATTTTTCTGTAAACCAACTTTCTGGCGAAATCCCTCAAAGCATGTCAGATCTGACGTTTCTAAGCCATTTGAACTTATCCG ACAATAGACTACGGGGAAGAATTCCTTCAGGGACTCAATTACAAAGCTTTGGTCCATCTAGTTTCAGTGGCAACGAGCTCTGTGGACCTCCACTCTCCAA GAATTGCAGCGTGGATAACAAGTTTCATGTTGAGCATGAAAGGGAAGAGGATGGCAATGGACTCAAGGGTAGGTGGTTCTATGTGAGCATGGTACTGGGT TTCATTGTGGGGTTCTGGGGTGTAGTCGGTCCTTTAATGTTTAATAGACGGTGGAGATACGTATATTATCATTTCTTGGACAGATTGAGAGACCAAATTT GGTGGCGTTTCATGTAA
AA sequence Show only first row Show all	>Potri.003G196766.1 pacid=42786383 polypeptide=Potri.003G196766.1.p locus=Potri.003G196766 ID=Potri.003G196766.1.v4.1 annot-version=v4.1 MDISHNLFQGEVSEVHFANLKNLRNFSAAGNQLNLRVSPDWIPPQLVFIDLRSWNVGPQFPKWVRPLEHLSYLDISNSSISSTIPIWFWTMSFRMEYLNL SHNQIQGVIPSKLKLDFTASYPLVDLSSNQFKGPLPSIFSNVGALDLSNNSFSGSMLNFLCHKIDELKNMQVLNLGENLLSGVIPDCWSSWQYLVAIKLS NNKLSGNIPDSIGALSLLESLHIRNSSLSGKLPISLKNCTKLITLDVAENELVGSMPAWIGKRFSSMVVLNMRANKFHGRIPRELCNLASLQILDLAHNR LSWSIPTCFNKLSAMATRNDSLGKIYLDSGSSTFDNVLLVMKGKVVEYSTILKFVRSIDLSSNALCGEIPEEVTRLSELQSLNLSQNSLTGRIPEGIGSL RYLESMDFSVNQLSGEIPQSMSDLTFLSHLNLSDNRLRGRIPSGTQLQSFGPSSFSGNELCGPPLSKNCSVDNKFHVEHEREEDGNGLKGRWFYVSMVLG FIVGFWGVVGPLMFNRRWRYVYYHFLDRLRDQIWWRFM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34930			disease resistance family prot...		Potri.003G196766 [exp]	0	1
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Potri.006G007100 [exp]	20.49	0.7163
AT4G01100		ADNT1	adenine nucleotide transporter...		Potri.003G137500 [exp]	24.24	0.6892
AT1G50670			OTU-like cysteine protease fam...		Potri.001G435500 [exp]	27.85	0.7230
AT5G63720		KPL	kokopelli (.1)		Potri.007G098300 [exp]	39.34	0.6972
AT5G38460			ALG6, ALG8 glycosyltransferase...		Potri.004G100500 [exp]	65.52	0.6273
AT5G59770			Protein-tyrosine phosphatase-l...		Potri.001G235400 [exp]	66.94	0.6415
AT1G17410			Nucleoside diphosphate kinase ...		Potri.003G068100 [exp]	83.24	0.6353
					Potri.004G133550 [exp]	89.39	0.6628
AT5G08450			unknown protein		Potri.018G136502 [exp]	92.83	0.6045
AT5G48670	MADS	FEM111, AGL80	AGAMOUS-like 80 (.1)		Potri.013G001700 [exp]	119.49	0.6051

Compare expression of checked genes

Potri.003G196766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.