Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 203 / 9e-57 disease resistance family protein / LRR family protein (.1) AT3G23120 145 / 4e-37 AtRLP38 receptor like protein 38 (.1) AT3G56370 142 / 6e-36 Leucine-rich repeat protein kinase family protein (.1) AT3G23110 140 / 3e-35 EMB2800, AtRLP37 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) AT2G26330 134 / 5e-33 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) AT3G28890 132 / 8e-33 AtRLP43 receptor like protein 43 (.1.2) AT5G01890 132 / 2e-32 Leucine-rich receptor-like protein kinase family protein (.1) AT1G08590 130 / 8e-32 Leucine-rich receptor-like protein kinase family protein (.1) AT1G71400 129 / 1e-31 AtRLP12 receptor like protein 12 (.1) AT5G62230 129 / 1e-31 ERL1 ERECTA-like 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G262800 [exp] 264 / 5e-78 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1) Potri.010G106900 [exp] 253 / 2e-74 AT2G34930 506 / 1e-164 disease resistance family protein / LRR family protein (.1) Potri.010G107000 [exp] 247 / 3e-72 AT2G34930 504 / 1e-163 disease resistance family protein / LRR family protein (.1) Potri.015G025300 [exp] 215 / 1e-60 AT2G34930 314 / 1e-91 disease resistance family protein / LRR family protein (.1) Potri.015G024800 [exp] 207 / 7e-58 AT2G34930 299 / 3e-86 disease resistance family protein / LRR family protein (.1) Potri.001G043800 [exp] 196 / 1e-54 AT2G34930 383 / 7e-119 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 193 / 4e-53 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 191 / 3e-52 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 190 / 3e-52 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016339 [exp] 410 / 2e-133 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10016338 [exp] 402 / 9e-132 AT2G34930 387 / 3e-121 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 400 / 2e-129 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10016342 [exp] 396 / 4e-128 AT2G34930 478 / 4e-154 disease resistance family protein / LRR family protein (.1) Lus10016337 [exp] 395 / 3e-127 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10016344 [exp] 393 / 3e-127 AT2G34930 399 / 1e-124 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 392 / 6e-126 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10039531 [exp] 385 / 1e-123 AT2G34930 485 / 2e-156 disease resistance family protein / LRR family protein (.1) Lus10002755 [exp] 384 / 5e-123 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 379 / 3e-121 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.003G196832.1 pacid=42786245 polypeptide=Potri.003G196832.1.p locus=Potri.003G196832 ID=Potri.003G196832.1.v4.1 annot-version=v4.1 ATGCTACGGGGTTCAATGAGTTCAATTCCTGTTAACATTCTTCTCCTTTCCTTGCTCCTTGTAGTAAGTGTTAGTCTTTGCTTCAGCTATGGAAGCTTTA CTCAAGGTTGCAGCCAGATTGAGAGAGATGCCCTTTTAAAGTTCAAGCATGATCTCAAAGACCCTTCAAACCGTCTTGCTTCTTGGGCTGGTTTTGGAGG GGATTGTTGCACTTGGCGTGGAGTCATTTGTGACAATGTAACTGGCCATGTCATTGAGCTCCGTCTAAGAAGTATTTCTTTCGCAGACTATCTTGCTTCT AGTGGTGCTTCCACTCAATATGAAGATTATCTGAAGTTAATCTTGAGTGGTAGGATCAATCCTTCATTGGTCAGCTTGAAGCATTTGAGGTACTTAGACC TACGAAACAATGACTTTGGAGGAGTTCAAATTCCCAAATTCATTGGCTTGATAGGGAGCTTGAAACACCTTGACCTTTCAGATGCTGGGTTTGCAGGTAC GATTCCTCACGGACTAGGAAATCTCTCAGATCTTAACTACCTTAATCTCCATGATTATTATTCCCAGTTCAACGTTGAGAATTTAAATTGGCTCTCTCAA CTTTCTTCACTAGAATTTCTTGATTTAAGTCTTGTGCATCTTGGTAACGTTTTTAATTGGTTAGAGGTGATAAACACACTCCCTTCTTTGGTAGAATTAC ACTTGTCATATTGCCAACTTCCTCCTGTTCCTCCAATTCTCTACGTTAACTTTTCATCCCTTTCTATTCTTGATTTGTCATCCAACTATGTTGATGAATC TGCAATTTCCATGCTAAACTTTCCTAGATGGGTTTCTCATCTTAAAACTCTTCTTTCTCTTAACCTGGCAAATAATAATTTTCAAGGTCCAATCCCGAAT GGTCTTCAAAACTTGACATTGCTTAAGGCACTTGATTTATCTATCAATCACTTCAGTTCTTCTATACCCGAATGGTTGTATGGTTTCGAACATCTTAAGC TCCTCAATCTTGGATCCAACAACTTGCAAGGTGTTCTTTCAAGTGCCATCGGAAACATGACCTCCTTGATTAGCCTTGACTTGTCATTAAATCATGAGCT CAAATTCGAAGGAGGAATTCCGGGATCATTCAAAAAACTTTGCAATTTGAGGACACTGTCCTTGTCAAACGTTAAACTGAACCAAGATATTGCTGAGGTC CTTGAAGTGCTGTTAGGATGTGTTTCGGAAGAGGTTGAGTCATTAGACTTGGCTGGTTGTCTATTATTTGGTCAGTTGACCAACCATCTTGGGAAATTTA GGAATCTAGCTTACCTTGGTCTAAGGTCTAATTCTATTTCAGGTCCAATTCCAATGGCTTTAGGAGAATTAGTGTCACGACCCGAATCCCGGATCCATGA CCGGCACATAGGCAAGGTTCCATACCTATGCGAACCCAAACTTACACACAAACTTATCATAACTCAATCAGAGTTCAACGCAGCATTAATAACAAAATCA ACTTCATAA
AA sequence Show only first row Show all	>Potri.003G196832.1 pacid=42786245 polypeptide=Potri.003G196832.1.p locus=Potri.003G196832 ID=Potri.003G196832.1.v4.1 annot-version=v4.1 MLRGSMSSIPVNILLLSLLLVVSVSLCFSYGSFTQGCSQIERDALLKFKHDLKDPSNRLASWAGFGGDCCTWRGVICDNVTGHVIELRLRSISFADYLAS SGASTQYEDYLKLILSGRINPSLVSLKHLRYLDLRNNDFGGVQIPKFIGLIGSLKHLDLSDAGFAGTIPHGLGNLSDLNYLNLHDYYSQFNVENLNWLSQ LSSLEFLDLSLVHLGNVFNWLEVINTLPSLVELHLSYCQLPPVPPILYVNFSSLSILDLSSNYVDESAISMLNFPRWVSHLKTLLSLNLANNNFQGPIPN GLQNLTLLKALDLSINHFSSSIPEWLYGFEHLKLLNLGSNNLQGVLSSAIGNMTSLISLDLSLNHELKFEGGIPGSFKKLCNLRTLSLSNVKLNQDIAEV LEVLLGCVSEEVESLDLAGCLLFGQLTNHLGKFRNLAYLGLRSNSISGPIPMALGELVSRPESRIHDRHIGKVPYLCEPKLTHKLIITQSEFNAALITKS TS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34930			disease resistance family prot...		Potri.003G196832 [exp]	0	1
AT4G09900		ATMES12	ARABIDOPSIS THALIANA METHYL ES...		Potri.013G104700 [exp]	39.11	0.5798
AT1G04850			ubiquitin-associated (UBA)/TS-...		Potri.017G056900 [exp]	47.28	0.5736
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Potri.003G217950 [exp]	52.00	0.5674
AT5G66240			Transducin/WD40 repeat-like su...		Potri.005G114600 [exp]	95.40	0.5449
AT1G50440			RING/FYVE/PHD zinc finger supe...		Potri.010G252900 [exp]	159.68	0.4747
AT4G20040			Pectin lyase-like superfamily ...		Potri.003G075300 [exp]	177.82	0.4846
AT5G08240			unknown protein		Potri.019G119000 [exp]	180.06	0.4918
AT3G52030			F-box family protein with WD40...		Potri.009G056500 [exp]	194.73	0.4929
AT3G49490			unknown protein		Potri.015G003700 [exp]	277.97	0.4722

Compare expression of checked genes

Potri.003G196832 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.