Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13080 1832 / 0 EST2, ATMRP3, ABCC3 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) AT3G13100 1733 / 0 ATMRP7, ABCC7 ATP-binding cassette C7, multidrug resistance-associated protein 7 (.1) AT3G13090 1704 / 0 ATMRP8, ATABCC6 ATP-binding cassette C6, multidrug resistance-associated protein 8 (.1) AT3G60160 1302 / 0 ATMRP9, ABCC9 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) AT1G04120 1300 / 0 ATABCC5, ABCC5, ATMRP5 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) AT3G60970 1125 / 0 ATMRP15, ABCC15 ATP-binding cassette C15, multidrug resistance-associated protein 15 (.1) AT3G62700 977 / 0 ATMRP10, ABCC14 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1) AT3G59140 969 / 0 ATMRP14, ABCC10 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) AT2G47800 966 / 0 EST3, ATMRP4, ABCC4 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1) AT3G21250 933 / 0 ATMRP6, ABCC8 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, ATP-binding cassette C8, multidrug resistance-associated protein 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T124606 [exp] 2821 / 0 AT3G13080 1830 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.T124406 [exp] 2687 / 0 AT3G13080 1847 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.003G197100 [exp] 2681 / 0 AT3G13080 1842 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.003G197101 [exp] 2675 / 0 AT3G13080 1862 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.T124506 [exp] 2638 / 0 AT3G13080 1847 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.003G198401 [exp] 2605 / 0 AT3G13080 1827 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.T125806 [exp] 2604 / 0 AT3G13080 1826 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.001G362300 [exp] 2232 / 0 AT3G13080 2008 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.001G362200 [exp] 2134 / 0 AT3G13080 1952 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013201 [exp] 1417 / 0 AT3G13080 1498 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Lus10022858 [exp] 1307 / 0 AT1G04120 2341 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Lus10018027 [exp] 1269 / 0 AT3G60160 1863 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Lus10042023 [exp] 1256 / 0 AT3G60160 1869 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Lus10030718 [exp] 1215 / 0 AT3G13080 1249 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Lus10030716 [exp] 1179 / 0 AT3G13080 1256 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Lus10024965 [exp] 1172 / 0 AT1G04120 2176 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Lus10027567 [exp] 1014 / 0 AT3G59140 2001 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10039320 [exp] 1012 / 0 AT3G59140 1991 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10011498 [exp] 957 / 0 AT2G47800 1796 / 0.0 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0241 [poplar] [flax] ABC_membrane PF00664 [poplar] [flax] ABC_membrane ABC transporter transmembrane region
Representative CDS sequence Show only first row Show all	>Potri.003G197200.2 pacid=42787408 polypeptide=Potri.003G197200.2.p locus=Potri.003G197200 ID=Potri.003G197200.2.v4.1 annot-version=v4.1 ATGTTAATGATGAAGAGGAGGTTTTTGTGGTATAAACAGACCTTGGTCTGTTGTTTGGGTGTCACGGTTTTTAATTTCATCTTGTGTTTGTTGAGCTACT TTTATTTGTATGGAAATGTTTTGTCTGATGGTGAAATAATGACCCTTTTGGATTTAGGGATTAGAACACTCTCTTGGGGTGCACTTGTTGTTTATTTGCA TACCCAATTCTTTAACTCAGGTGAAAACATGTTCCCTTTGTTATTGAGAGTTTGGTGGGGTTTCTATTTGGCTATTTCTTGTTATTGCTTTCTTGTAGAT GTTTTCATTCATCACAAACACGGGTCTTTGGAGATAGAGTGGTATTTGGTGTCTGATGCGGTCTCTGTGCTTACTGGATTGTTTCTTTGTTATGTTGGGT TTTTGAGAAGCGATATTCAAGATGTACTTGGAGAACCCCTTTTGAATGGTGATTCTAGTTCGATTAATAATTTGGAGACAAGTAATTCTAGGGGGGGAGA TACGGTGACTCCATTTGGAAATGCTGGTCTTTTCAGTATTCTCACCTTCTCTTGGATGAATTCTTTAATTGCTGCTGGCAATAGGAAAATTTTAGACCTT GAAGATGTTCCTCAACTTCACGGTGTTGACAGTGTGGTTGGAGCTTTTCCAGTTTTTAAAAATAAGCTTGAGTCAGATTGTGGTAGAGCTACCAGGTTCA AGCTCGCGAAAGCACTGTTCCTGTTAGTCTGGAAAGAAATTTTAAAGACAGCTTTATTGGCGTTGACACACACGTTATGTTCTTATGCTGGTCCCTACCT TATCGACGCTTTTGTTCAATGCCTTGAAGGGCGAGGAGAATTCAAGAATCAAGGTTATATTTTGGCTTCCACCTTTGTGGCTGCAAAGCTTGCTGAGTGC CTCGCACACAGGCATTTATCTTTTAGGTTGCAACAAATTGGAACAAGGCTCCGTGCAGCAACAGCCACGATGATTTACAACAAGAGCTTGACCATTTCCT GTCAGTCAAAGCAGGGGCATTCAAGTGGAGAAATGATCAATATTATGACAATTGATGCTGATAGACTTGGCATCTTTAGTTGGTACATACACGATCCATG GTTGGTCATCTTGCAAGTTTGTTTGGCCTTGCTGATACTGTACAGAAATTTGGGACTCGGGTCAGTTGCTGGCTTTGTTGCGACAGTAATTGTCATGTCG TTAAACTATCCTTTCGGAAGATTAGAGGAGAAGTTTCAAGACAAGTTAATGGAATCAAAAGATAAACGAATGAAGGCAACCGTGGAGATTTTGAGAAATA TGAGAATTCTCAAGCTTCAGGGATGGGAAATGAAGTTTTTGTCTAAGATTCTTGAACTCAGGGAAGTAGAGACACGGTGGCTGAAGAAATACTTCTATAA TTCAGTAGTGATCACTGTTGTCTCTTGGGCTACTCCCACTGTTGTGGCTGTGGCCACCTTCGGTACTTGCATGCTAATGGGAATCCCGCTTGAATCAGGG AAGGTCTTATCTGCACTCGCAACATTTGGGATTCTTCAATCCCCAATCTATAACCTTCCCGATACAGTTTCTATGCTAATTCAGACAAAGGTTTCTCTCG ACAGAATTGCATCTTTTCTTTGTCTTGATGACTTGCAGCCTGATGCTATAGAGAAGCTTCCAGGAGGCAGTTCTGATACAGCAATTGAGATTGTTGATGG AAATTTCTCTTGGGATTTGTCTTCACCCAGCGCAACATTGAAAGATATAAACTTCAAAGTGCTGAATGGTATGAAGGTAGCTGTTTGTGGTACTGTTGGT TCAGGCAAGTCGAGCTTGCTTTCCTCCATTTTGGGAGAGTTACCCAAGATCTCAGGGACACTCAAGTTGTGTGGGACAAAGGCGTATGTTGCTCAGTCAC CTTGGATACAGAGTGGTACGATAGAAGAGAACATATTGTTTGGTAAGGAGATGGACAAAGAAAGGTACGATAAGGTACTTGAAGCATGTTCCCTGAAGAA GGACCTGGAAATCCTCTCATTCGGGGATCAAACAGTTATTGGTGAGAGGGGTATCAACTTGAGTGGTGGACAGAAGCAAAGAATACAGATAGCACGTGCT CTCTACCAGGATGCCCAAATCTATCTATTTGATGACCCTTTCAGTGCCGTGGATGCTCATACTGGATCTCATTTGTTTAAAGAAGTTTTGCTTGGTCTTT TAAGTTCAAAAACTGTTATTTATGTTACTCATCAGGTTGAGTTCTTATCCGCTGCTGATCTAATCTTGGTCATGAAAGATGGAAGGATCGCGCAGGCTGG GAAGTATGACGAAATTCTCAATTCAGGATCTGATTTTAAGGTACTTGTAGGTGCACATAAGGCAGCTTTATCAGTTCTGGATTCCAGACAGGCAGGAGCA GTTTCCGAAAATGAAAGTGTCAGAGACAACAATGGAGGGGAGAACAGTACTGATAGGATTGTACATGACGAAGGAAATAAAGATTCACAAATTGGTAAAG CAGATGACGTAGCCGAGCCACAAGCACAACTCATTCAAGAAGAAGAGAGAGAGAAAGGCAGTGTTGGGTTTCAAATCTATTGGAAATATATCACAACAGC ATACGGAGGAGCTCTGGTGCCCTTTATATTACTGGCACAACTTCTCTTTCAGATCCTTCAAATTGGTAGCACTTATTGGATGGCATGGGCAACTCCTGCG ACAAAGGATGTGAAACCTGGTGTTAGTGGATCTAGACTGTTAATCGTCTATGTATCTCTGGTTATTGGAAGTTCTTTTTGCATCCTGGCTCGAGCCATGC TTCTTGTAACAGCAGGGTACAAAACTGCAACTCTACTATTCAACAAATTGCATCAGTGCATTTTTCGTGCTCCCATGTCCTTTTTTGACGCAACCCCTAG TGGACGAATCATTAACAGAGCTTCTAAAGATCAAAGTGCACTAGAAATGCAAATTCCAGATCTAGTTGGGGGTCTTGCCTTCGAAGCAATCATGCTTCTG GGAATCATAGCAGTGATGTCTCAAGTGGCATGGCAAGTTTTTATAGTTTCCATCCCTGTAATTGCTGCCTGTATCTGGTATCAGCAATATTACATACCTG CAGCAAGAGAGCTTTCACGGTTGATTGGAGTATGCAATGCTCCAGTTATCCAAAATTTTGCAGAAACAATTTCAGGAGCAACAACGATCAGGAGCTTTGA TCAAGAATCAAGATTCCAAGAAATAAATATGAAACTAACAGATGCATATTCTCGGCCCAAATTTCATAATTCTGCTGCAATGCAATGGCTTTGCTTCCGC ATGGATATGTTCAGTTCTGTTACGTTTGCTTTCTGTCTGTTTCTTTTAGTCTCTTTTCCAGAAAGAACTAATCCAGCCATTGCAGGCTTAGCTGTTACAT ATGCGCTTGAGCTACACATGGCACAATTTGGGTTGATATGGAATTTCTGCATTTGTGAGAACAAACTCATATCAGTAGAGAGAATTCTTCAGTACATGTC TATTCCTGCTGAGCCTCCTCTTGTAATTGAATCAAAGAGGCCTGACCATTCTTGGCCATCACATGGTAAAATTGATATCGATAATCTACAGGTCCGATAT GCCCCACACATGCCACTGGTGCTGCGTGGTCTCTCATGCACTTTCCCAGGAGGGAAGAAAACTGGTATTGTTGGGAGAACAGGCAGCGGTAAATCTACTC TCATACAGGCTCTTTTCCGAACCGTTGAACCTGCAGCTGGTCAGATTATGATTGACAGCATTGATATCTCATTGATTGGCCTGCATGATTTAAGGTCAAG ACTGAGCATTATTCCCCAGGATCCAACCATGTTCGAAGGGACTGTGAGAAGTAATCTGGACCCACTTGAAGAGTACACAGATGAACAGATCTGGGAGGTT CTGGACAAGTGCCAACTTGGAGATGAAGTTAGGAAAAAGGAAAGGAAGCTAGATTCCACAGTTATCGAGAATGGGGAGAACTGGAGTATGGGCCAGAGGC AGCTAGTCTGTCTTGGGCGTGTGCTCCTCAAGAAAAGTAAGGTCTTGGTCCTTGATGAAGCTACTGCCTCAGTTGACACAGCCACTGATAATCTTATTCA GCAAACGCTCAGGCAGAACTTCTCTGACTGTACAGTGATAACCATTGCACATAGAATAACCTCTGTTCTTGACAGTGACATGGTTTTGCTTCTAAGTCAA GGTCTCATTGAGGAATATAATTCGCCAACAAGGTTGTTAGAAAACAAGTCATCGTCATTCTCCCAACTTGTAGCAGAGTACACAGTGAGGTCAAATACCC GTTTCGAGAAATCAACTGGATTAAATTTATAG
AA sequence Show only first row Show all	>Potri.003G197200.2 pacid=42787408 polypeptide=Potri.003G197200.2.p locus=Potri.003G197200 ID=Potri.003G197200.2.v4.1 annot-version=v4.1 MLMMKRRFLWYKQTLVCCLGVTVFNFILCLLSYFYLYGNVLSDGEIMTLLDLGIRTLSWGALVVYLHTQFFNSGENMFPLLLRVWWGFYLAISCYCFLVD VFIHHKHGSLEIEWYLVSDAVSVLTGLFLCYVGFLRSDIQDVLGEPLLNGDSSSINNLETSNSRGGDTVTPFGNAGLFSILTFSWMNSLIAAGNRKILDL EDVPQLHGVDSVVGAFPVFKNKLESDCGRATRFKLAKALFLLVWKEILKTALLALTHTLCSYAGPYLIDAFVQCLEGRGEFKNQGYILASTFVAAKLAEC LAHRHLSFRLQQIGTRLRAATATMIYNKSLTISCQSKQGHSSGEMINIMTIDADRLGIFSWYIHDPWLVILQVCLALLILYRNLGLGSVAGFVATVIVMS LNYPFGRLEEKFQDKLMESKDKRMKATVEILRNMRILKLQGWEMKFLSKILELREVETRWLKKYFYNSVVITVVSWATPTVVAVATFGTCMLMGIPLESG KVLSALATFGILQSPIYNLPDTVSMLIQTKVSLDRIASFLCLDDLQPDAIEKLPGGSSDTAIEIVDGNFSWDLSSPSATLKDINFKVLNGMKVAVCGTVG SGKSSLLSSILGELPKISGTLKLCGTKAYVAQSPWIQSGTIEENILFGKEMDKERYDKVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARA LYQDAQIYLFDDPFSAVDAHTGSHLFKEVLLGLLSSKTVIYVTHQVEFLSAADLILVMKDGRIAQAGKYDEILNSGSDFKVLVGAHKAALSVLDSRQAGA VSENESVRDNNGGENSTDRIVHDEGNKDSQIGKADDVAEPQAQLIQEEEREKGSVGFQIYWKYITTAYGGALVPFILLAQLLFQILQIGSTYWMAWATPA TKDVKPGVSGSRLLIVYVSLVIGSSFCILARAMLLVTAGYKTATLLFNKLHQCIFRAPMSFFDATPSGRIINRASKDQSALEMQIPDLVGGLAFEAIMLL GIIAVMSQVAWQVFIVSIPVIAACIWYQQYYIPAARELSRLIGVCNAPVIQNFAETISGATTIRSFDQESRFQEINMKLTDAYSRPKFHNSAAMQWLCFR MDMFSSVTFAFCLFLLVSFPERTNPAIAGLAVTYALELHMAQFGLIWNFCICENKLISVERILQYMSIPAEPPLVIESKRPDHSWPSHGKIDIDNLQVRY APHMPLVLRGLSCTFPGGKKTGIVGRTGSGKSTLIQALFRTVEPAAGQIMIDSIDISLIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEV LDKCQLGDEVRKKERKLDSTVIENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQNFSDCTVITIAHRITSVLDSDMVLLLSQ GLIEEYNSPTRLLENKSSSFSQLVAEYTVRSNTRFEKSTGLNL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Potri.003G197200 [exp]	0	1
AT4G03140			NAD(P)-binding Rossmann-fold s...		Potri.014G135510 [exp]	1.41	0.8951
AT3G09390		ATMT-K, ATMT-1,...	ARABIDOPSIS THALIANA METALLOTH...		Potri.001G239650 [exp]	1.73	0.8542
AT4G06536			SPla/RYanodine receptor (SPRY)...		Potri.002G123800 [exp]	3.74	0.8011
AT5G13920			GRF zinc finger / Zinc knuckle...		Potri.009G112676 [exp]	6.00	0.8015
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Potri.014G100100 [exp]	7.21	0.7471
AT5G52900		MAKR6	MEMBRANE-ASSOCIATED KINASE REG...		Potri.015G026600 [exp]	8.48	0.7823
AT4G30520		SARK	SENESCENCE-ASSOCIATED RECEPTOR...		Potri.018G101300 [exp]	9.16	0.8196
AT2G02250		ATPP2-B2	phloem protein 2-B2 (.1)		Potri.018G016100 [exp]	9.94	0.7767
AT1G07400			HSP20-like chaperones superfam...		Potri.015G064800 [exp]	10.09	0.7447
AT4G33550			Bifunctional inhibitor/lipid-t...		Potri.003G084000 [exp]	10.24	0.7456

Compare expression of checked genes

Potri.003G197200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.