Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54450 663 / 0 Major facilitator superfamily protein (.1) AT1G22540 450 / 5e-153 Major facilitator superfamily protein (.1) AT1G72125 444 / 2e-150 Major facilitator superfamily protein (.1) AT1G72120 439 / 7e-149 Major facilitator superfamily protein (.1) AT1G22550 439 / 9e-149 Major facilitator superfamily protein (.1) AT3G53960 435 / 2e-146 Major facilitator superfamily protein (.1) AT1G72140 429 / 8e-145 Major facilitator superfamily protein (.1) AT1G22570 422 / 4e-142 Major facilitator superfamily protein (.1) AT3G54140 417 / 4e-140 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT2G37900 417 / 1e-139 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T124706 [exp] 1095 / 0 AT3G54450 662 / 0.0 Major facilitator superfamily protein (.1) Potri.001G027100 [exp] 972 / 0 AT3G54450 695 / 0.0 Major facilitator superfamily protein (.1) Potri.013G107050 [exp] 481 / 7e-165 AT1G22540 670 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106600 [exp] 475 / 2e-162 AT1G22540 666 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079551 [exp] 463 / 7e-158 AT1G22540 662 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106500 [exp] 457 / 1e-155 AT1G22540 644 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106400 [exp] 457 / 2e-155 AT1G22540 632 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106925 [exp] 453 / 3e-154 AT1G22540 605 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079600 [exp] 451 / 2e-153 AT1G22540 632 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039521 [exp] 676 / 0 AT3G54450 612 / 0.0 Major facilitator superfamily protein (.1) Lus10024156 [exp] 667 / 0 AT3G54450 593 / 0.0 Major facilitator superfamily protein (.1) Lus10035516 [exp] 446 / 6e-151 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10016932 [exp] 448 / 4e-149 AT1G22540 673 / 0.0 Major facilitator superfamily protein (.1) Lus10009462 [exp] 435 / 4e-147 AT1G22540 580 / 0.0 Major facilitator superfamily protein (.1) Lus10008252 [exp] 434 / 2e-146 AT1G22540 641 / 0.0 Major facilitator superfamily protein (.1) Lus10030947 [exp] 409 / 2e-136 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10024340 [exp] 406 / 2e-135 AT2G37900 775 / 0.0 Major facilitator superfamily protein (.1) Lus10040099 [exp] 403 / 4e-134 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10018207 [exp] 407 / 8e-134 AT5G01180 818 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.003G197333.1 pacid=42786083 polypeptide=Potri.003G197333.1.p locus=Potri.003G197333 ID=Potri.003G197333.1.v4.1 annot-version=v4.1 ATGGATATCGTCGTTGCTCCAATCATGACTCGGAATGGCCAGGAAGAGACCAAGGTCGTCTCTGCCCTACGAAAACCCACCAAAGGTGGCTGGAATTCTG CCATCTTCATTATCTTTGTTGAGGTGAGTCTGAGGTTTGCCTACTATGGTTTGGCTGGTAACCTCATAACATACCTCACAAATGATCTTCATCAGTCCAC TTCCACAGCCATCAAGAATGTCAACACATGGGTTGGTGTATCAGCAATCTTCCCCATCTTCGGAGCAATTGTAGCTGACTCTTTACTTGGCCGCTTCAAG ACCATCCTTCTTGCCTCAGCCATTTACTTCCTCGGGATGATTCTGTTGACCTTATCGGTCTCGGTAATTCCTATGCGTTACCGTGAGGCTGTGTTCTTTA TTGCTCTCTACATACTAGCTGTTGGTGAAGGTGGGCACAAGCCATGTGTGCAGACCTTTGCAGCGGATCAGTTTGATGAGGAGAAGCCAGAGGAGAAGGC GGCCAAGAGTTCATTCTTCAATTGGTGGTACTTAGGTATAGTGGCTGGCGGATCTTCTGCTGTCCTGTTGGTCATTTACATTCAGGACAATGTGGGATGG ACAGCAGGATTTGGAATGCTGACAGGAGCATTAGGGGTGGCATTGTTTATATTCTTAGCAGGAATTAAGAGATACAGGAAACAAGCTCCAGTGAAAAGCC CTTTCACCATGGTGGCACAAGTATTTGTGGCAGCCATGCGGAAGCGGCGCGTGATCGAGACTCACCAAGGTTTGGGCATTTGTTATGAGGCAGTAGGGAC TGACGTGGAAGGTCAACCCCGCAACAGTCGAACTTTGGCTGCCACAAATCAATACAGGTTCTTGGACAAGGCCATGATCATTGACAATTTGGATGCCTCA AGCAAGCCAAGAAACCCTTGGCGTTTATGCTCACTCAACCAGGTGGAAGAAGTGAAGCTTGTGCTGCGCCTCCTCCCCATTTGGTTAAGTTGCTTCATGT TCACTGCGGTATTAGTTCAAACACACACTCTTTTCATCAAGCAAGGCAGCACAATGATCAGATCAATAGGACCAAACTTCCAAGTTCCACCAGCATCATT CCAAAGCCTCGTAGGCCTCACGATCCTCTTTACCATTCCCATCTATGACCGCATCTTCGTCCCTGCGGCAAGAAAATTAACCGGACACCGCTCTGGTATA ACTATGCTACAACGGATTGGCATTGGCCTGTTCCTGTCTATAGTTGAAATGGTAGTAGCAGCTCAAGTAGAGGCTAAAAGGGTTAGCATTGCAAGAGAGC ACGGTCTAATGGACACCCCAAAAGCAACAATCCCGATGAGTGTCTGGTGGATACTCCCACAGTACATGATCAGCGGCATATCAGATGTGTTCACGGTTGT TGGATTGCAGGAACTGTTCTACGATCAAATGCCGGAATCGATGAGAAGCCTCGGAGCTGCAGCCCATATAAGTGTGATCGGAGTTGGGAGCTTTATCAAC ACTGCTATTATAACTGCGGTGCAGGCCATTACAGCAAGGTCCATCGGCATTTTACTTGGTGACAATCTAAACCGTGCCCATGTTGACTACTTCTACTGGG TGATGGCAGCATTGAGTGCTTTAAATTTTTGTGTTTACTTGTGGATTGCTAGTGGTTTTGTGTACAAAAAAGTTGAAGGTGAGGAGGAACCACGATAG
AA sequence Show only first row Show all	>Potri.003G197333.1 pacid=42786083 polypeptide=Potri.003G197333.1.p locus=Potri.003G197333 ID=Potri.003G197333.1.v4.1 annot-version=v4.1 MDIVVAPIMTRNGQEETKVVSALRKPTKGGWNSAIFIIFVEVSLRFAYYGLAGNLITYLTNDLHQSTSTAIKNVNTWVGVSAIFPIFGAIVADSLLGRFK TILLASAIYFLGMILLTLSVSVIPMRYREAVFFIALYILAVGEGGHKPCVQTFAADQFDEEKPEEKAAKSSFFNWWYLGIVAGGSSAVLLVIYIQDNVGW TAGFGMLTGALGVALFIFLAGIKRYRKQAPVKSPFTMVAQVFVAAMRKRRVIETHQGLGICYEAVGTDVEGQPRNSRTLAATNQYRFLDKAMIIDNLDAS SKPRNPWRLCSLNQVEEVKLVLRLLPIWLSCFMFTAVLVQTHTLFIKQGSTMIRSIGPNFQVPPASFQSLVGLTILFTIPIYDRIFVPAARKLTGHRSGI TMLQRIGIGLFLSIVEMVVAAQVEAKRVSIAREHGLMDTPKATIPMSVWWILPQYMISGISDVFTVVGLQELFYDQMPESMRSLGAAAHISVIGVGSFIN TAIITAVQAITARSIGILLGDNLNRAHVDYFYWVMAALSALNFCVYLWIASGFVYKKVEGEEEPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54450			Major facilitator superfamily ...		Potri.003G197333 [exp]	0	1
AT5G11460			Protein of unknown function (D...		Potri.018G035400 [exp]	15.55	0.6951
AT1G22610			C2 calcium/lipid-binding plant...		Potri.013G107700 [exp]	20.97	0.6299
AT1G69580	GARP		Homeodomain-like superfamily p...		Potri.008G087600 [exp]	25.29	0.6012
AT2G29970			Double Clp-N motif-containing ...		Potri.008G069100 [exp]	26.30	0.6381
AT1G05065		CLE20	CLAVATA3/ESR-RELATED 20 (.1)		Potri.014G156600 [exp]	27.49	0.6270
AT4G35300		TMT2	tonoplast monosaccharide trans...		Potri.005G255400 [exp]	37.94	0.5995
AT1G02630			Nucleoside transporter family ...		Potri.018G130000 [exp]	41.24	0.6005
AT3G01840			Protein kinase superfamily pro...		Potri.001G332800 [exp]	42.05	0.5634
					Potri.010G084201 [exp]	43.71	0.5927
AT3G59310			Eukaryotic protein of unknown ...		Potri.014G151800 [exp]	45.29	0.5535

Compare expression of checked genes

Potri.003G197333 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.