Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19420 1292 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT5G12350 1276 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G69710 855 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G42140 808 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G76950 788 / 0 PRAF1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT4G14368 752 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G23270 735 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G47660 688 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT1G65920 592 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G63860 185 / 2e-50 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T124906 [exp] 2009 / 0 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G026900 [exp] 1801 / 0 AT5G19420 1281 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.009G071800 [exp] 1382 / 0 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G276900 [exp] 1305 / 0 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.005G190000 [exp] 805 / 0 AT5G42140 1407 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.002G070300 [exp] 803 / 0 AT5G42140 1422 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.008G167500 [exp] 766 / 0 AT4G14368 1266 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.004G080900 [exp] 670 / 0 AT1G65920 940 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.017G139600 [exp] 662 / 0 AT1G65920 937 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036030 [exp] 1355 / 0 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10024157 [exp] 1333 / 0 AT5G19420 1279 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10009701 [exp] 1286 / 0 AT5G19420 1567 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10039525 [exp] 1202 / 0 AT5G19420 1245 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10016335 [exp] 1000 / 0 AT5G19420 971 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10002751 [exp] 981 / 0 AT5G19420 949 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10028600 [exp] 793 / 0 AT1G76950 1516 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10018904 [exp] 793 / 0 AT1G76950 1520 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10036737 [exp] 780 / 0 AT1G69710 974 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10042800 [exp] 780 / 0 AT5G42140 1461 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00415 [poplar] [flax] RCC1 Regulator of chromosome condensation (RCC1) repeat CL0390 [poplar] [flax] zf-FYVE-PHD PF01363 [poplar] [flax] FYVE FYVE zinc finger CL0390 [poplar] [flax] PF08381 [poplar] [flax] BRX Transcription factor regulating root and shoot growth via Pin3 CL0390 [poplar] [flax] PF13713 [poplar] [flax] BRX_N Transcription factor BRX N-terminal domain CL0390 [poplar] [flax] PF16627 [poplar] [flax] BRX_assoc Unstructured region between BRX_N and BRX domain
Representative CDS sequence Show only first row Show all	>Potri.003G197600.2 pacid=42787006 polypeptide=Potri.003G197600.2.p locus=Potri.003G197600 ID=Potri.003G197600.2.v4.1 annot-version=v4.1 ATGGCTGCTTTGGAGCCGACGTTGAGAGTTGGCCCCTTAGAGAGAGACATTGAATTGGCCATCACTGCTCTTAAAAGGGGCACTCAGTTGCTCAAGTATG GCCGTAGAGGGAAGCCCAAATTTTGCCCCTTCAGGCTGTCGAATGATGAATCTGTTCTAATTTGGATATCTGGGAAAGAGGAGAAGCATCTTAAACTAAG CCATGTCTCCAGAATTATCCCTGGTCAGCGCACTCCAATTTTTCAGAGATATCCTCGTCCTGAGAAGGAATACCAGTCATTTTCTCTAATATACAGTGAC AGGTCTTTAGATTTGATATGCAAGGACAAAGAAGAAGCTGAAGTCTGGTTTACTGGTCTAAAGGCACTAATATCAAATCGCCAGATTTGGAAAAAGAGAG AAGAAACTACAAATGATGGACTTTTATCAGAGGCAAATAGTCCTAGGGCATACACCATTAGAAGTTCTCCTTTGAGCTTTGCATTTGGTAGTGATGATAG TTCACTGAAGGATGGAATGGATCCTCTTCGTCTTCGTACGCCATATGACAGTCCTCCAAATACTGGTTTAGAGAAGGCATTGTCTGATGTAGTATACACT GTGCCTCCAAAGGTTTTATTTCCATTAGAATCTGCTTGTGCGCCAGCTCAGTCTCAGTTATTAGGAGGCTCAGATGAAACAACAGGGCGTGCAAAGGTTA CGAACACAGATAATTTTAGGGTTAGTTTATCAAGTGCTGTTAGCTCATCAAGTCAAGGCTCTGGTCGTGATGAAAATGATGCATTAGGGGATGTTTATAT TTGGGGGGAGGGCACTGGTGACGGCATTCTAGGTGGTGGAGTTCATAGAATTGGAGGTTCTGGTGTTCAGATGGATTCTTTTGTGCCAAAAGCTTTGGAA TCTGCAGTTTTACTAGATGTTCAGGCTATAGCTTGTGGTCGGCAACATGCTGCTTTGGTAACAAAACAAGGGGAGGTTTTCTCTTGGGGAGAGGAACTAG GAGGCAGACTCGGACATGGTGTAGACTCTGATGTTTCACATCCAAAGTTTGTAGATGGACTAAAAAATTTCAATGTTGAACTTGTAGCATGTGGAGAATA TCATTCTTGTGCGGTAACACTTTCTGGTGATTTGTACATATGGGGTGGTAATGCTTATAATTTTGGACTCTTGGGCTGTGGAAGTGAAGCTACTCAGTGG GTTCCAAGAAAGTTGGATGGACCACTTGAGGGAATACATGTCTCATCAGTTTCATGTGGACCATGGCACACAGCTGTTGTAACCTCTGCTGGCCAATTGT TTACTTTTGGAGATGGAACCTTTGGGGTTTTAGGACATGGGGACCGCATAAGCGTGTCAATACCAAGAGAGGTCGAGTCTCTTAAGGGCCTCCGCACCAT GCGAGCAGCTTGTGGTGTGTGGCACACAGCTGCAGTTGTTGAAATCATGGTTGGGTCATCAAATTCCAGTAATTGTTCTTCAGGAAAGCTCTTCACATGG GGAGATGGAGATAAATGTCGTCTTGGGCATGGTGATAAGGAAGCTAGACTGGTGCCCACTTGTGTTGCTACTCTTGTTGAACCCAACTTCTGTCAAGTTG CCTGTGGTCACAGCCTCACTGCTGCACTTACAACCACAGGTCAGGTTTACACCATGGGAAGCCCTGTATATGGTCAATTGGGGAATCCCCAAGCTGACGG CATGCTCCCTACTCGTGTTGAGGGAAAGCTCATGAAAAATTTTGTTGAAGAATTAGCCTGTGGTGCTTATCATGTTGCAGTTTTGACCTCAAGAACTGAA GTTTACACATGGGGAAAGGGTGCAAATGGCAGGCTAGGTCATGGTGATGCAGATGATAGAAATTCCCCATCTGTAGTTGAAGCTTTGAAAGACAAACAGG TTAAAGGTATTGTCTGTGGCACTAGTTTTACTGCAGCTATCTGTCTTCATAAATGGGTATCCGGTATTGATCAATCAATGTGTTCAGGTTGCCACCTCCC ATTTAATTTCAAACGGAAACGACACAATTGTTATAATTGTGGGCTTGTTTTCTGCCATTCATGTAGTAATAAAAAGTCTCTCAAGGCTTCAATGGCTCCA AATCCTAACAAACCTTATCGTGTCTGTGATAATTGTCTTAGCAAACTTAGAAGAAGCTCTGAAACTGACTCTTCAGTTCACTCTGCTCTTAGTAGAAGAG GAAGTGTCAATCAGGGACTAAATGAAGTCGCAGAAAAGACTGAAAATTCAAATTCAAAATCGCATGCTAAGCTTGGAAGAAACTTCTCTATGGAATCATC TAAAGAGGTGGAAAGTATATCTTCCAGAAGAAACAGGAAGTCAAACTCCAATAGCATTCAGGTTTCACCCTCTGGAAATGATGTTTCTCGGCGCAATACA TTTAATAACTCTAAATCATTTGGATCCTCCAAGAAATTTTTCTCAGCTTCTCTTCCTGGATCAAGAATTGTGTCTCGAGCAACATCTCCAACATCAAGAC GATCTAGTCCCCCTCGTGCTGCAACACCAACCCCAACTCTCTCAGCTAATGAGTTGCCAAAACTAGCTGTAGATGGTGCTGGGAGGTTAAATGACAGCCT GCGTGAAGAAATTGTAAAATTAAGAGCTCAGGTTGAAGAGCTTACAAATAAAGCTCAGCTTCAGGATGTTGAGCTGGAAAGAACAACCAAGCAGTTGAAG GAGGCTATTGCAGTTGCGGAGGAGGAAACTACTAAATGCAAGGCAGCAAAGGAAGTAATTAAGTCACTCACGGCCCAATTGAAAGAAGTGGCTGAAAGGG TACCTGTTGGAGCATCAAGAAACAGCAACTCGCCCTCTTTTTATTGCTCTAGCAACACAACTCCATGGGACGTTTCTCCTGGAATTCTTGAGCAGCTCAG TAGTCCCACAGCATGTCATGAACAAGATTCAAAAGGATCAAACAGCCTGGTAATTTCGAATGTGTCAGGGACTACTACTACTACTACTAATCAGACTCCA CATCACTCCGAAGTGACACAGATAGAAACAACAGTGAGGAATAAGAACAGAATAGCAAAAGTTGAACCCACTAATGGCGATGAATGGGTTGAACAAGACG AACCAGGTGTATATATTACCCTTGTTTCCTTGCATGGAGGTGCGAAGGATCTCAAACGTGTCCGCTTCAGTCGGAAGCGGTTCAGCGAAAAACAAGCAGA ACAATGGTGGGCAGCCAACAGAGCGAGAGTATACCAGCAATACAACGTTCCCATGGGTGACAGGTCTATTGTTAGTGTGGGAAGGGAAGGGTTAACTCAA TGA
AA sequence Show only first row Show all	>Potri.003G197600.2 pacid=42787006 polypeptide=Potri.003G197600.2.p locus=Potri.003G197600 ID=Potri.003G197600.2.v4.1 annot-version=v4.1 MAALEPTLRVGPLERDIELAITALKRGTQLLKYGRRGKPKFCPFRLSNDESVLIWISGKEEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYSD RSLDLICKDKEEAEVWFTGLKALISNRQIWKKREETTNDGLLSEANSPRAYTIRSSPLSFAFGSDDSSLKDGMDPLRLRTPYDSPPNTGLEKALSDVVYT VPPKVLFPLESACAPAQSQLLGGSDETTGRAKVTNTDNFRVSLSSAVSSSSQGSGRDENDALGDVYIWGEGTGDGILGGGVHRIGGSGVQMDSFVPKALE SAVLLDVQAIACGRQHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKFVDGLKNFNVELVACGEYHSCAVTLSGDLYIWGGNAYNFGLLGCGSEATQW VPRKLDGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRISVSIPREVESLKGLRTMRAACGVWHTAAVVEIMVGSSNSSNCSSGKLFTW GDGDKCRLGHGDKEARLVPTCVATLVEPNFCQVACGHSLTAALTTTGQVYTMGSPVYGQLGNPQADGMLPTRVEGKLMKNFVEELACGAYHVAVLTSRTE VYTWGKGANGRLGHGDADDRNSPSVVEALKDKQVKGIVCGTSFTAAICLHKWVSGIDQSMCSGCHLPFNFKRKRHNCYNCGLVFCHSCSNKKSLKASMAP NPNKPYRVCDNCLSKLRRSSETDSSVHSALSRRGSVNQGLNEVAEKTENSNSKSHAKLGRNFSMESSKEVESISSRRNRKSNSNSIQVSPSGNDVSRRNT FNNSKSFGSSKKFFSASLPGSRIVSRATSPTSRRSSPPRAATPTPTLSANELPKLAVDGAGRLNDSLREEIVKLRAQVEELTNKAQLQDVELERTTKQLK EAIAVAEEETTKCKAAKEVIKSLTAQLKEVAERVPVGASRNSNSPSFYCSSNTTPWDVSPGILEQLSSPTACHEQDSKGSNSLVISNVSGTTTTTTNQTP HHSEVTQIETTVRNKNRIAKVEPTNGDEWVEQDEPGVYITLVSLHGGAKDLKRVRFSRKRFSEKQAEQWWAANRARVYQQYNVPMGDRSIVSVGREGLTQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19420			Regulator of chromosome conden...		Potri.003G197600 [exp]	0	1
AT5G04895			DEA(D/H)-box RNA helicase fami...		Potri.010G246000 [exp]	1.00	0.8244
AT1G61690			phosphoinositide binding (.1)		Potri.004G030500 [exp]	2.00	0.7753
AT2G17580			Polynucleotide adenylyltransfe...		Potri.005G100100 [exp]	7.74	0.7430
AT3G14470			NB-ARC domain-containing disea...		Potri.004G194800 [exp]	8.83	0.7424	RGA.63
AT2G21630			Sec23/Sec24 protein transport ...		Potri.002G238500 [exp]	10.67	0.7517
AT1G67140		SWEETIE	SWEETIE, HEAT repeat-containin...		Potri.004G101250 [exp]	11.31	0.7501
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Potri.017G013000 [exp]	12.16	0.6623
AT2G43465			RNA-binding ASCH domain protei...		Potri.007G132100 [exp]	13.07	0.7194
AT5G49980		AFB5	auxin F-box protein 5 (.1)		Potri.002G102700 [exp]	18.52	0.6512
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.013G034300 [exp]	20.12	0.6826

Compare expression of checked genes

Potri.003G197600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.