Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54460 1422 / 0 SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein (.1) AT5G22750 149 / 3e-36 RAD5A, RAD5 DNA/RNA helicase protein (.1) AT5G05130 115 / 8e-26 DNA/RNA helicase protein (.1) AT5G43530 109 / 8e-24 Helicase protein with RING/U-box domain (.1) AT1G11100 100 / 5e-21 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2) AT1G61140 88 / 3e-17 EDA16 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) AT3G20010 84 / 5e-16 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT1G05120 84 / 6e-16 Helicase protein with RING/U-box domain (.1) AT1G02670 82 / 2e-15 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G50410 79 / 1e-14 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T125006 [exp] 2603 / 0 AT3G54460 1422 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein (.1) Potri.004G189400 [exp] 147 / 2e-35 AT5G22750 1506 / 0.0 DNA/RNA helicase protein (.1) Potri.006G035700 [exp] 109 / 6e-24 AT5G05130 1117 / 0.0 DNA/RNA helicase protein (.1) Potri.003G083400 [exp] 109 / 6e-24 AT5G43530 1342 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.016G033700 [exp] 103 / 3e-22 AT5G05130 710 / 0.0 DNA/RNA helicase protein (.1) Potri.016G033800 [exp] 89 / 2e-17 AT5G05130 650 / 0.0 DNA/RNA helicase protein (.1) Potri.014G154600 [exp] 80 / 7e-15 AT1G05120 1058 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.007G000700 [exp] 74 / 6e-13 AT1G50410 1083 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Potri.004G037700 [exp] 74 / 7e-13 AT1G61140 1007 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024158 [exp] 891 / 0 AT3G54460 833 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein (.1) Lus10024159 [exp] 656 / 0 AT3G54460 584 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein (.1) Lus10039526 [exp] 582 / 0 AT3G54460 499 / 9e-158 SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein (.1) Lus10043365 [exp] 149 / 4e-36 AT5G22750 1445 / 0.0 DNA/RNA helicase protein (.1) Lus10041156 [exp] 117 / 3e-26 AT5G43530 1222 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10039001 [exp] 114 / 3e-25 AT5G05130 1002 / 0.0 DNA/RNA helicase protein (.1) Lus10011211 [exp] 95 / 3e-19 AT1G61140 959 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10018465 [exp] 82 / 3e-15 AT1G61140 546 / 2e-175 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10041008 [exp] 78 / 5e-14 AT1G50410 1060 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10013452 [exp] 78 / 6e-14 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00176 [poplar] [flax] SNF2_N SNF2 family N-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] PF07496 [poplar] [flax] zf-CW CW-type Zinc Finger
Representative CDS sequence Show only first row Show all	>Potri.003G197701.1 pacid=42787175 polypeptide=Potri.003G197701.1.p locus=Potri.003G197701 ID=Potri.003G197701.1.v4.1 annot-version=v4.1 ATGGGCGATCACGATGATGATCCTTACCCATACCACAAACTCTGCGGTTACCTCTGTACAGTTCTCACATCACCACACCCACTCCCTTTCCTTTCTCATT GCCATCTCATCACAGACGGAAGCCACCAACAAATCAGATTCAAATCCCTAAACGACGTCGTTCTGTCTCCGCTTTCCAATCCTTACGGCCAGAACGGCGC GGTTTCTCTTCAAGAGAACAGTAATGCGGTTGGGAAGAAGACGAAGAAGAAGAAGAGAATGGCGAAGAGGGGGAGTTGTTTGAAGAAAAGCGGTAATTCA GTGGCGGAGAAGAAGAGAGTAGGGAGGAGGGTAATTGGGATGGTGAATGGTAGTGTGAGCGTGGTGCATCAAATTCGCGCGCTTGTAATGCACAAGTGTG TTAAGATCTTAGCGCGTGTGTTGCATGTTGCTGAGAGTGAGGGTGAGGTTGTTGAAGTGAGAGTGGTGGTGCTTGTTGATGTTTATTTGCCGGTTTCGGT TTGGTCCGGTGGGCAGTTTCCCAAGTCTGGGCCAATTGCTGGATCTCTCTTTCGGCACTTGAGTTGCGATTGGGAGAAGAGGAGGTCCATGCTTGTTGAT GGAGGAGAGTATTTTAAAAATGCTCTTGGAGATCATAGGAGCATTTGGAATCTTTCTGGTTGTCATGTTCTTGGATGCAATTTGCATTGTGATGTCCCTG ATTCTTCAAGCAAAAAGCGTTTTGAACTTCATGAAATTTTTAAAGGTTTACCCAGCACGGAAAATAAGGAACAGTATTACTCTTCAAGAGTAAAACCAGC GGATAACTCTTTGGAATCTGGTATTTGGGATTTAACTGGTGATATCTTGATGAGCATTCTTTCTGCACTTGGTCCAAAGGACCTTGTCAGGGTTGCTGCA ACCTGTCACCATTTGAGATCCCTGGCTGTTTCAATTATGCCATGTATGAAACTTAAATTATTTCCTCATCAGCAGGCAGCAGTTGAGTGGATGTTACAGC GCGAGCGGAATGCTCAAGTCTTGCCACATCCTCTGTACACTAATTTATCCACAGAAGATGGGTTTACATTTCATGTAAGTACTGTTTCTGGTGAAATAAT TACTGGAGTAGCTCCAACTGTAAGAGACTTTCATGGGGGAATGTTCTGTGATGAACCTGGCTTAGGAAAGACTATCACTGCTCTTTCTCTTATTCTGAAG ACAAGAGGAACAGTAGCTGACCCACCAGATGGAGTTCAAATAACCTGGTGTACACATAATGGAGAACAGAGATGTGGCTATTACGAGGTTGATGGCAGAA ACTTCACTCCTAATAACACACCCCTGGCAAAAAGGGTAATGAACCAGAGTGCACGCAGGGGACAATTATCTTTGGATAAATCCACTCTGATGAATGATCC AGGTCAACAGATTGAGGGGTTTAGCAATTCTTGTCCAGTTAATGGAATGGAATCGTCACCAGCTCCATCTTCAGATCAAACAGCACGTGTAGTTCAATTG AGTCGCGTGAAGAGAAATCTTCTCCATGAATATGATGAAACACCTGTTTTTAGTAACAAGAAAAAGAGGAAGCATCGTTCTAATGCCCCTATATATGTCT CAGAGGAACAACGGCATGATAGAGCACGCAGGTTGAATTTGATTACTGGACATTTTAGGGATTTTAATGAGACTTGGGTTCAATGCGATGCATGCAGAAA GTGGAGGAAGCTTACAAGCAGTGTAGCAGATACTGATGCTGCATGGTTTTGTAGCATGAATACAAACCCTGAACGTCAGAGTTGTAGAGATGCTGAAGAA GCTTGGGATGACAGCTGTTCCTTAACTCATGTACCGGGATTTCACACCAAAGGAACTTCAGGGGGGGAGGAGCAAAATGTGTCATTTTTCATTAGTGTTC TCAAGGAGCACTATTCCATGATAAACTCTAAAACCAAGAAAGCTTTGACTTGGCTGGCTAAACTTTCTCCAGAAAGACTTTCTTTAATGGAAACAATTGG TTTGGCAAGTCCGGTCGTAGGTACTGGTTCTGTATCTGGTGGTGGAGATTCCCATGGGTTTCATAAAATATTTGAAGCATTTGGTCTTGTACGGAGAGTA GAAAAGGGAGCCAGTAAGTGGTGTTACCCGCAGAAACTTGAAAACTTAGCTTTTGATTTGGCTGCTTTTAGAATTGCTATCTGCAAGCCGTTGGATTCAG TCAGGTTATATTTATCAAGAGCAACCCTAGTTGTTGTCCCAGCAAATCTAGTTGATCATTGGAAAACCCAGATAGAAAAGCATGTCAAACCTGGCCAGTT GCGGCTGTGTGTCTGGACTAATCATAAAAAGCCTTCTGCTCACAGTCTGGCATGGGATTATGATGTTGTTATAACAACCTTCAGTCGATTAAGTGCTGAG TGGGGTCCCAGGAAAAAAAGTCCTCTGATGCAAGTGCATTTTCTCCGGGTCATGTTAGATGAGGGACACACCCTTGGCTCTAGTCTGAGCTTGACAAACA AATTGCAAATGGCTATGTCATTGATGGCTTCAAATCGCTGGTTACTAACAGGAACACCAACACCTAACACACCCAATAGCCAGCTGTCTCATCTCCAGCC AATGCTTAAGTTTCTACAGGAGGAAGCGTATGGGCTGAATCAAAAGTCATGGGAAGCCGGCGTTCTTAGACCATTTGAAGCCGAGATGGAAGAAGGCCGC ACACGCTTGTTGCATTTGCTCCACAGATGCTTGATTAGTTCTAGGAAGACAGATTTGAAAACTATCCCTCCATGCATCAAGAAGGTGACATTCCTCAATT TTACCAAGGATCATGCAAGAAGCTATAATGAATTGGTAGTTACTGTGCGACGTAATATTCTAACTGCTGACTGGAATGATCCTTCTCATGTTGAGAGTTT GCTTAACCCAAAGCAGTGGAAGTTTCGAAGTACCCTTATTAGAAATGTCAGGCTATCTTGTTGTGTGGCAGGGCATATTAAAGTGGCAGAAGTTGGTGAA GATATTCAGGAAACAATGGATATTCTGATTGAAAAAGGACTTGATCCCATTTCAGAGGAGCATGCTTTGATAAAATACTATCTTCAGTATGGTGGTAACT GTCTCAGATGCAAGGAATGGTGTCGTCTACCTTTCATCACGCCATGTAGGCATCTTTTGTGCCTTGATTGTGTTGCTTTGAATAGTGAAAAGTGTACTTT TCCTGGCTGTGGTTACTCATATGAGATGCAAAGTCCAGAAGTATTGACCCGACCAGAAAATCCAAACCCGAAATGGCCTGTCCCCAAAGATCTTATTGAG TTGCAACCTTCCTATAAACAGGATGACTGGGATCCAGATTGGCAGTCAACATCTAGCAGTAAAGTTGCGTACCTTGTACAGAAGCTGAAAGCATTGCAGG AGGCCAGTAGAGAGAGTAGCTGGTCCATTGACAAGGATACTCAAATAAGTGTTTCTAGTTTAGTGCTTCAGCAGGACTGCTTTAGTGTTAACAAGGCAGC CATGGAGAAAGTTATAATATTTTCTCAATTTCTTGAGCATATACATGTGATTGAACAGCAGTTAGCATTTGCAGGTATTAAATTTGCTGGAATGTACAGT CCAATGCCTCAAATCAACAAGATGAAATCACTGGCCACCTTCCAGCATGACGCCACATGTATGGCTCTGTTAATGGATGGCAGTGCTGCATTGGGCCTTG ATTTGAGCTTTGTAACTCATGTATTCTTAATGGAGCCAATCTGGGACAGAAGCATGGAAGAACAAGTGATAAGTCGAGCTCATCGGATGGGTGCTACTCG CCCCATCAATGTGGAGACTTTAGCCATGCGTGGTACAATTGAGGAGCAAATGCTAGAATTCCTACAGGATGCTGATGGTTGTAGAAGAGTTTTGAAAGAA GAGTCAAGTAAAACTGACCATGCAGGGGCACGGCTCCACCGATCTCTACATGATTTTGCTGAGAGCGACTACTTGGCCCACCTTAGCTTTGTGCATACAG GTTCAAGAGCGTAA
AA sequence Show only first row Show all	>Potri.003G197701.1 pacid=42787175 polypeptide=Potri.003G197701.1.p locus=Potri.003G197701 ID=Potri.003G197701.1.v4.1 annot-version=v4.1 MGDHDDDPYPYHKLCGYLCTVLTSPHPLPFLSHCHLITDGSHQQIRFKSLNDVVLSPLSNPYGQNGAVSLQENSNAVGKKTKKKKRMAKRGSCLKKSGNS VAEKKRVGRRVIGMVNGSVSVVHQIRALVMHKCVKILARVLHVAESEGEVVEVRVVVLVDVYLPVSVWSGGQFPKSGPIAGSLFRHLSCDWEKRRSMLVD GGEYFKNALGDHRSIWNLSGCHVLGCNLHCDVPDSSSKKRFELHEIFKGLPSTENKEQYYSSRVKPADNSLESGIWDLTGDILMSILSALGPKDLVRVAA TCHHLRSLAVSIMPCMKLKLFPHQQAAVEWMLQRERNAQVLPHPLYTNLSTEDGFTFHVSTVSGEIITGVAPTVRDFHGGMFCDEPGLGKTITALSLILK TRGTVADPPDGVQITWCTHNGEQRCGYYEVDGRNFTPNNTPLAKRVMNQSARRGQLSLDKSTLMNDPGQQIEGFSNSCPVNGMESSPAPSSDQTARVVQL SRVKRNLLHEYDETPVFSNKKKRKHRSNAPIYVSEEQRHDRARRLNLITGHFRDFNETWVQCDACRKWRKLTSSVADTDAAWFCSMNTNPERQSCRDAEE AWDDSCSLTHVPGFHTKGTSGGEEQNVSFFISVLKEHYSMINSKTKKALTWLAKLSPERLSLMETIGLASPVVGTGSVSGGGDSHGFHKIFEAFGLVRRV EKGASKWCYPQKLENLAFDLAAFRIAICKPLDSVRLYLSRATLVVVPANLVDHWKTQIEKHVKPGQLRLCVWTNHKKPSAHSLAWDYDVVITTFSRLSAE WGPRKKSPLMQVHFLRVMLDEGHTLGSSLSLTNKLQMAMSLMASNRWLLTGTPTPNTPNSQLSHLQPMLKFLQEEAYGLNQKSWEAGVLRPFEAEMEEGR TRLLHLLHRCLISSRKTDLKTIPPCIKKVTFLNFTKDHARSYNELVVTVRRNILTADWNDPSHVESLLNPKQWKFRSTLIRNVRLSCCVAGHIKVAEVGE DIQETMDILIEKGLDPISEEHALIKYYLQYGGNCLRCKEWCRLPFITPCRHLLCLDCVALNSEKCTFPGCGYSYEMQSPEVLTRPENPNPKWPVPKDLIE LQPSYKQDDWDPDWQSTSSSKVAYLVQKLKALQEASRESSWSIDKDTQISVSSLVLQQDCFSVNKAAMEKVIIFSQFLEHIHVIEQQLAFAGIKFAGMYS PMPQINKMKSLATFQHDATCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPINVETLAMRGTIEEQMLEFLQDADGCRRVLKE ESSKTDHAGARLHRSLHDFAESDYLAHLSFVHTGSRA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54460			SNF2 domain-containing protein...		Potri.003G197701 [exp]	0	1
AT3G43240	ARID		ARID/BRIGHT DNA-binding domain...		Potri.018G064500 [exp]	9.48	0.7644
AT4G34310			alpha/beta-Hydrolases superfam...		Potri.014G034100 [exp]	9.48	0.7947
AT5G22750		RAD5A, RAD5	DNA/RNA helicase protein (.1)		Potri.004G189400 [exp]	9.79	0.8035
AT2G24640		UBP19	ubiquitin-specific protease 19...		Potri.006G270600 [exp]	14.83	0.7088
AT4G24200			Transcription elongation facto...		Potri.002G020000 [exp]	15.65	0.7700
AT4G04940			transducin family protein / WD...		Potri.018G148066 [exp]	19.23	0.7368
AT4G30820			cyclin-dependent kinase-activa...		Potri.006G180900 [exp]	21.54	0.6716
AT5G19400		SMG7	Telomerase activating protein ...		Potri.001G275400 [exp]	26.11	0.7326
AT1G33270			Acyl transferase/acyl hydrolas...		Potri.003G020800 [exp]	27.20	0.6590
AT2G27350		OTLD1	otubain-like deubiquitinase 1,...		Potri.009G160100 [exp]	33.80	0.7468

Compare expression of checked genes

Potri.003G197701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.