Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13480 760 / 0 FY Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G15900 115 / 9e-27 PRL1 pleiotropic regulatory locus 1 (.1) AT5G23430 105 / 4e-23 Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G16650 101 / 2e-22 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 100 / 1e-21 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 99 / 3e-21 TAF5 TBP-associated factor 5 (.1) AT5G67320 99 / 3e-21 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT4G02730 95 / 5e-21 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT2G41500 96 / 3e-20 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT1G61210 96 / 6e-20 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T125206 [exp] 1011 / 0 AT5G13480 759 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G026800 [exp] 886 / 0 AT5G13480 726 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G012800 [exp] 113 / 3e-26 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1) Potri.008G002300 [exp] 104 / 6e-23 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 104 / 8e-23 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 99 / 3e-22 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 97 / 1e-20 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.018G020200 [exp] 97 / 1e-20 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.006G263400 [exp] 96 / 4e-20 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026837 [exp] 828 / 0 AT5G13480 759 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10020214 [exp] 808 / 0 AT5G13480 738 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10006511 [exp] 113 / 3e-26 AT4G15900 753 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10037500 [exp] 111 / 1e-25 AT4G15900 752 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10041007 [exp] 107 / 6e-24 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10021059 [exp] 105 / 2e-23 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10004167 [exp] 101 / 4e-22 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10006916 [exp] 99 / 4e-22 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 97 / 8e-22 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10013452 [exp] 102 / 1e-21 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.003G197900.1 pacid=42787288 polypeptide=Potri.003G197900.1.p locus=Potri.003G197900 ID=Potri.003G197900.1.v4.1 annot-version=v4.1 ATGAATTACGGTGATCCTCAACAACACCAGCACCAGCAGCCACAACAACAACAACAACACCAGCACCAGCACCAGCACCAGCACCAGCACCAGCAGCCAC AACAACAACACCAGCACCAGCAGCCACAGCACCAGCACCAGCACCAGCACCAGCACCAGCAGCCACAACACCACCACCAACAACATATGCAACAGCAACC GCCTCCTGTTGGTGATTTTCATAGAGGGCAGCCACCGCCAATGATGCGACAACCCTCCGCTTCATCAACCACTCTTAACCCGCTTGATTACCACCACCAT CCGCAGGCCGCCCCCGGTCCTCCTCCTCCTAAATACGAAGCTAATCACGGTGATGGTTACGGTGGAAAAAGGATGAGGAAGCTTACGCAGAGGAGAGCAG TTGATTATACAAGCACGGTTGTTAGGTATATTCAGACTCGTATGTGGCAGTGGGACTTGAGGGACAGGACAGTATTGCAACATACCCCAGCAGCTGCGAT CGATGTGTTGCCTCCAGTTGCCTATTCTGATAATCCATCAACAAGCTTTGCCACAAAGTTTGTTCATACATCTCTAAACAAAAACCGTTGTTCGATAAAT CGGGTTTTGTGGACTCCAAATGGGAAACGTCTAATCACAGGTTCTCAAAGTGGGGAATTCACCCTTTGGAATGGACAGTCATTTAATTTTGAAATGATTC TTCAGGCTCATGATCAAGCAATCAGGTCTATGGTATGGAGCCACAATGACAATTGGATGGTCTCTGGTGATGATGGTGGTTCAATTAAGTATTGGCAGAG CAACATGAATAATGTTAAGGTCAATAAATCTGCTCATAAAGAATCAGTGCGTGACTTAAGTTTCTGCAGGACAGATTTGAAGTTCTGTTCATGCTCCGAT GATACTACTGTTAAAGTTTGGGACTTTGCTCGGTGCCATGAAGAGCGTTCATTAACGGGCCATGGTTGGGATGTGAAGAGTGTTGATTGGCACCCTACAA AATCTCTTCTGGTCTCAGGTGGGAAAGACAACCTAGTAAAACTCTGGGATGCTAAATCTGGAAGAGAGCTTTGCTCATTTCATGGCCACAAAAATACCGT TCTTTGTGTCAAATGGAACCAAAATGGTAACTGGGTGCTGACTGCTTCAAAAGATCAAATCATCAAGCTTTATGATTTAAGGGCAATGAAGGAGCTTGAA TCTTTCCGCGGACATCGGAAGGACGTGACTGCATTGGCTTGGCATCCATTCCATGAAGAGTACTTTGTTAGTGGGAGTTATGACGGATCCATTTTCCATT GGCTTGTGGGGCATGAAACCCCCCAGGTTGAAGTTTCCAGTGCTCATGATAATAGTGTTTGGGATCTTTCATGGCATCCTATTGGATATCTTCTTTGCAG TGGTAGCAATGATCACACAACAAAGTTTTGGTGTCGAAATAGGCCAGGAGACACTGCCCGTGATAAATTTAACGTGGGTCAAAACCAAGGTTATGGTGAG CAAAATCCTGCCCTTGGTGGCCGCTTCCCTGGCAATTTCCATGTACCTGAACCACCGATAACTCCAGGACCATTTGCTCCTGGACTGACTCGAAATGAAG GAACTATTCCAGGTGTTGGAGCTGCAATGCCACTATCAATTACATCTCTTGATGCATCGCAGGGAGAGCAGAGGCAGCCTCTTCCTGTTTCTATGCCCTT TGGAGGGCCTCCTCTTCCTCCTGGCCCACATCCGTCACTTCGTGCAGCCAATCAGCAGCAGGGATATCAGCAAAGTCCTCAGCAGCAGCAGCAACCACTC CCTCAGCACATGCCTCCTTTGCCTATGCCGCCTCCAAACATGCAACAGCTACTGCCTCCATCCCATGTATCCCTGCTCTCTCATCCCCATCTACCTCGCC CTCCTCAAATGCCTCCTCATGGCATGCCTTCACCAATCCCATCTTCAATGCCCGGATCTTTGCCTTCATCAATGCCTGGTCTAATGGGGATGCAAGGGAC GATGAGTCAGATGGTACCTCTGTTGCCACAGGGCCATTTTATGGGCATGAATCCAATGCACTCAGGATCCTTGCCCACAAGTGCTGCCCCTCCAGTCGGC GGGGGCTTTCCAAATGGCCTGCCCAATATGCAGGGCCCATCAAATGCCACAGGGGGGCAAATGTATCCACAGGGCGGTCCATTCAACCATCCTCAAGGTG GACAGATGCCAAGGATGCCTGGGTTTAATCCTTACCAGTCTGGAAACCAATCTGGTATGCCTCCACCACTACCACCTGGTCTACCACCACATTCCCAGAC ACCTCAGTAG
AA sequence Show only first row Show all	>Potri.003G197900.1 pacid=42787288 polypeptide=Potri.003G197900.1.p locus=Potri.003G197900 ID=Potri.003G197900.1.v4.1 annot-version=v4.1 MNYGDPQQHQHQQPQQQQQHQHQHQHQHQHQQPQQQHQHQQPQHQHQHQHQHQQPQHHHQQHMQQQPPPVGDFHRGQPPPMMRQPSASSTTLNPLDYHHH PQAAPGPPPPKYEANHGDGYGGKRMRKLTQRRAVDYTSTVVRYIQTRMWQWDLRDRTVLQHTPAAAIDVLPPVAYSDNPSTSFATKFVHTSLNKNRCSIN RVLWTPNGKRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGSIKYWQSNMNNVKVNKSAHKESVRDLSFCRTDLKFCSCSD DTTVKVWDFARCHEERSLTGHGWDVKSVDWHPTKSLLVSGGKDNLVKLWDAKSGRELCSFHGHKNTVLCVKWNQNGNWVLTASKDQIIKLYDLRAMKELE SFRGHRKDVTALAWHPFHEEYFVSGSYDGSIFHWLVGHETPQVEVSSAHDNSVWDLSWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNVGQNQGYGE QNPALGGRFPGNFHVPEPPITPGPFAPGLTRNEGTIPGVGAAMPLSITSLDASQGEQRQPLPVSMPFGGPPLPPGPHPSLRAANQQQGYQQSPQQQQQPL PQHMPPLPMPPPNMQQLLPPSHVSLLSHPHLPRPPQMPPHGMPSPIPSSMPGSLPSSMPGLMGMQGTMSQMVPLLPQGHFMGMNPMHSGSLPTSAAPPVG GGFPNGLPNMQGPSNATGGQMYPQGGPFNHPQGGQMPRMPGFNPYQSGNQSGMPPPLPPGLPPHSQTPQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13480		FY	Transducin/WD40 repeat-like su...		Potri.003G197900 [exp]	0	1
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Potri.010G039900 [exp]	4.89	0.6620	ALA3.3
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Potri.009G085400 [exp]	12.72	0.6517
AT5G13560			unknown protein		Potri.008G048100 [exp]	13.96	0.5274
AT4G39690			unknown protein		Potri.005G080200 [exp]	14.86	0.5970
AT5G17440			LUC7 related protein (.1)		Potri.013G084800 [exp]	19.13	0.6274
AT3G47700		MAG2	maigo2, RINT-1 / TIP-1 family ...		Potri.015G063100 [exp]	21.09	0.6302
AT4G37270		ATHMA1, HMA1	ARABIDOPSIS THALIANA HEAVY MET...		Potri.005G142732 [exp]	21.26	0.6359
AT1G60200			splicing factor PWI domain-con...		Potri.008G147100 [exp]	21.49	0.6617
AT3G25680			unknown protein		Potri.010G131000 [exp]	34.46	0.5683
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Potri.010G070400 [exp]	37.14	0.5995

Compare expression of checked genes

Potri.003G197900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.