Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59560 320 / 2e-110 SRR1 SENSITIVITY TO RED LIGHT REDUCED 1, sensitivity to red light reduced protein (SRR1) (.1), sensitivity to red light reduced protein (SRR1) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T125306 [exp] 572 / 0 AT5G59560 315 / 2e-108 SENSITIVITY TO RED LIGHT REDUCED 1, sensitivity to red light reduced protein (SRR1) (.1), sensitivity to red light reduced protein (SRR1) (.2) Potri.001G026700 [exp] 497 / 2e-180 AT5G59560 317 / 3e-109 SENSITIVITY TO RED LIGHT REDUCED 1, sensitivity to red light reduced protein (SRR1) (.1), sensitivity to red light reduced protein (SRR1) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039536 [exp] 339 / 5e-118 AT5G59560 295 / 2e-100 SENSITIVITY TO RED LIGHT REDUCED 1, sensitivity to red light reduced protein (SRR1) (.1), sensitivity to red light reduced protein (SRR1) (.2) Lus10024163 [exp] 337 / 4e-117 AT5G59560 295 / 9e-101 SENSITIVITY TO RED LIGHT REDUCED 1, sensitivity to red light reduced protein (SRR1) (.1), sensitivity to red light reduced protein (SRR1) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07985 [poplar] [flax] SRR1 SRR1
Representative CDS sequence Show only first row Show all	>Potri.003G198000.1 pacid=42785837 polypeptide=Potri.003G198000.1.p locus=Potri.003G198000 ID=Potri.003G198000.1.v4.1 annot-version=v4.1 ATGACAGCTTCTGCAAAACTCCTTGCTCTTGACAAGCCCTCCCAAAATGAAAACTGGACAGTTGTAATGCCTCGTCGAGGCAAAAAGAGAATACATTCCC TAAGACATAATACTCCAGAAGCAGAACAGCAGCCATGGGTTCCTACTGAGCTTGAATCCGATCCAGAAAGAGAAGCAAAGTTAATTCAAAAGATGGAATT TTGTATCAAGAAAGTTGAGAGCTCTCGATTCTATCAGAACTTTTTGGAGCAAGTAGAAAATCCTGAAATCCTGGATTCTTTTCACAGGGTGCTGGGCTTT GAACTGAAGATGCCGATGGTGATATATGGAATTGGCAGCATTGAATCATATGAAACCCCTCGATTCCAGCTTAGTCTTGCTATCTTGATGAAAAGGAAGT TTTGTTGGATTGGGGACATAGAGGTTTTTGACCCAATTCTTTCTGCAACAGAGTCTCGGGTTCTGGAATCCCTTGGTTGTTCTGTCCTGTCTGTAAATGA GCAAGGTCGTAGACGTGCTACGAAGCCAATGCTTTTTTACATGCCACATTGTGAGGCAGGGCTATATAACAATCTCTTACAGGCAAACTGGGAATTGGAA CTGCTTAATCATATTGTATTATTTGGAAATAGCTTTGAGATGTATGAGTTCTTTTCCGAGATCAAGAACTCCATTGTTGTGGAGTCAACAATGCATGTTT TGGCTGCTCGAAAATTTGCAAATGAGTATGTAATCAAGACAGCTTCAGACGATTATTTTGCTGCTTTTCATGATTCAAGCTGGCATTTTTTCAGCCCTGC TCTTGATACAGAGCTGCTGCTGGTTAAAAATTAA
AA sequence Show only first row Show all	>Potri.003G198000.1 pacid=42785837 polypeptide=Potri.003G198000.1.p locus=Potri.003G198000 ID=Potri.003G198000.1.v4.1 annot-version=v4.1 MTASAKLLALDKPSQNENWTVVMPRRGKKRIHSLRHNTPEAEQQPWVPTELESDPEREAKLIQKMEFCIKKVESSRFYQNFLEQVENPEILDSFHRVLGF ELKMPMVIYGIGSIESYETPRFQLSLAILMKRKFCWIGDIEVFDPILSATESRVLESLGCSVLSVNEQGRRRATKPMLFYMPHCEAGLYNNLLQANWELE LLNHIVLFGNSFEMYEFFSEIKNSIVVESTMHVLAARKFANEYVIKTASDDYFAAFHDSSWHFFSPALDTELLLVKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G59560		SRR1	SENSITIVITY TO RED LIGHT REDUC...		Potri.003G198000 [exp]	0	1
AT1G79870			D-isomer specific 2-hydroxyaci...		Potri.001G183700 [exp]	20.78	0.6081
AT2G18290		EMB2783, APC10	EMBRYO DEFECTIVE 2783, anaphas...		Potri.005G121700 [exp]	25.92	0.5969
AT5G59560		SRR1	SENSITIVITY TO RED LIGHT REDUC...		Potri.001G026700 [exp]	27.91	0.6249
AT4G38020			tRNA/rRNA methyltransferase (S...		Potri.005G147600 [exp]	32.09	0.6724
AT3G20290		ATEHD1	EPS15 homology domain 1 (.1.2)		Potri.001G356300 [exp]	32.93	0.6594
AT5G10940		ASG2	ALTERED SEED GERMINATION 2, tr...		Potri.002G103066 [exp]	35.24	0.6609
AT2G43900			Endonuclease/exonuclease/phosp...		Potri.007G145100 [exp]	36.74	0.6115
AT3G60510			ATP-dependent caseinolytic (Cl...		Potri.014G057400 [exp]	40.95	0.6051
AT1G02160			Cox19 family protein (CHCH mot...		Potri.014G051850 [exp]	44.29	0.5704
AT5G07900			Mitochondrial transcription te...		Potri.004G012400 [exp]	50.40	0.6222

Compare expression of checked genes

Potri.003G198000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.