Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54470 685 / 0 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T125906 [exp] 838 / 0 AT3G54470 685 / 0.0 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) (.1) Potri.001G026300 [exp] 808 / 0 AT3G54470 711 / 0.0 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039539 [exp] 741 / 0 AT3G54470 776 / 0.0 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) (.1) Lus10024166 [exp] 732 / 0 AT3G54470 774 / 0.0 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0533 [poplar] [flax] PRTase-like PF00156 [poplar] [flax] Pribosyltran Phosphoribosyl transferase domain CL0036 [poplar] [flax] TIM_barrel PF00215 [poplar] [flax] OMPdecase Orotidine 5'-phosphate decarboxylase / HUMPS family
Representative CDS sequence Show only first row Show all	>Potri.003G198501.1 pacid=42786057 polypeptide=Potri.003G198501.1.p locus=Potri.003G198501 ID=Potri.003G198501.1.v4.1 annot-version=v4.1 ATGTCCTCCATGGAATCCCTAATTCTCCAACTCCACGAGATCTCCGCAGTCAAATTTGGTTCCTTCAAGCTCAAATCCGGTATAACCTCTCCAGTCTACA TCGACCTCCGCCTCATAATTTCATACCCCTCCCTCCTCCGCCACATTTCCCAAACCCTGATCACCTCCATCCCTGCCACTACCACTTTCGACCTCATATG CGGCGTCCCCTACACCGCTCTCCCAATCGCCACCACCGTATCAGTCTCGAACAACATCCCCATGGTAATGCGCAGGAAAGAAGTGAAAGATTACGGTACC TCTAAGTCTATCGAGGGTAATTTCCAAAAGGACCAGACTTGTTTGATAGTTGAAGATTTGGTTACGAGTGGGACTTCTGTTCTTGAAACGGCTTTGCCGT TGAGGGCGGCGGGGTTGAAGGTGACGGATGCAGTGGTTTTGATTGACAGGGAACAAGGAGGGAGGGAGAATTTGGAAGAGAATGGGATTAAGTTGCATGC GATTATTAAGTTGAGTGAGATGGTTAGGGTTTTGAGGGAGAAGGGGAAATTGGAGGAGGAAGTGGAGAAGGGGGTTTTGAAGTTCTTGGAGGAGAATAGG AAGGTTAGTGTTGTTAAAGGGGTGGATAAGAGTGTTAGGGTTAAGGTTTCAGGGTTTGAGGAAAGAGCGAAGTTAGCAAAGAATGAGATGGGGAAGAGGT TGTTTGAGGTTATGGTTAAAAAGGAGAGCAATCTGTGTGTTGCAGCTGATGTTGGTACTGCTAAGGAATTGCTTGAGCTTGCTGAAAAAGTTGGACCTGA GATATGTTTGTTGAAAACCCATGTCGATATTTTGCCTGATTTCAATCCTGATTTTGGTGCAAAACTTCGTGCGATTGCAGATAAGTACAATTTTTTAATT TTTGAAGATCGTAAGTTTGCTGACATCGGTAACACAGTGACCATGCAGTATGAAGGGGGTATCTTCCATATATTGGATTGGGCTGATATAGTTAATTGTC ACATTATTTCTGGTCCTGGAATTGTTGACGGGTTGAAATTGAAGGGTTTGCCTCGTGGGAGGGGCCTCTTGCTGCTTGCAGAAATGAGTTCAGCCGGCAA CTTTGCTAAGGGAGATTACACTGCTGCGGCAGTAAAAATTGCTGAAGAACATTCTGATTTTGTGATTGGCTTCATCTCGGTAAACCCAGCCTCATGGCCA GGTGCACCAGTAAATCCAGCATTTATTCAGGCAACACCTGGAGTTCAAATGGTCACTGGTGGCGATGCGCTTGGCCAGCAGTATAATACACCATATTCTG TCATCTTCGATAGGGGCAGTGACATCATAATCGTGGGACGTGGGATTATAAAGGCAGCAGATCCTGCAGAGGCAGCTCGTGAATACCGTCTTCAAGGATG GGATGCATACCTGGAAAAATGCACATGA
AA sequence Show only first row Show all	>Potri.003G198501.1 pacid=42786057 polypeptide=Potri.003G198501.1.p locus=Potri.003G198501 ID=Potri.003G198501.1.v4.1 annot-version=v4.1 MSSMESLILQLHEISAVKFGSFKLKSGITSPVYIDLRLIISYPSLLRHISQTLITSIPATTTFDLICGVPYTALPIATTVSVSNNIPMVMRRKEVKDYGT SKSIEGNFQKDQTCLIVEDLVTSGTSVLETALPLRAAGLKVTDAVVLIDREQGGRENLEENGIKLHAIIKLSEMVRVLREKGKLEEEVEKGVLKFLEENR KVSVVKGVDKSVRVKVSGFEERAKLAKNEMGKRLFEVMVKKESNLCVAADVGTAKELLELAEKVGPEICLLKTHVDILPDFNPDFGAKLRAIADKYNFLI FEDRKFADIGNTVTMQYEGGIFHILDWADIVNCHIISGPGIVDGLKLKGLPRGRGLLLLAEMSSAGNFAKGDYTAAAVKIAEEHSDFVIGFISVNPASWP GAPVNPAFIQATPGVQMVTGGDALGQQYNTPYSVIFDRGSDIIIVGRGIIKAADPAEAAREYRLQGWDAYLEKCT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54470			uridine 5'-monophosphate synth...		Potri.003G198501 [exp]	0	1
AT3G27080		TOM20-3	translocase of outer membrane ...		Potri.003G173400 [exp]	16.70	0.9012	Pt-TOM20.2
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.006G072100 [exp]	18.43	0.8790
AT3G18190			TCP-1/cpn60 chaperonin family ...		Potri.012G051300 [exp]	20.39	0.8986
AT5G25757			RNA polymerase I-associated fa...		Potri.018G038500 [exp]	24.18	0.8870
AT5G28060			Ribosomal protein S24e family ...		Potri.008G152500 [exp]	25.59	0.8978
AT5G60390			GTP binding Elongation factor ...		Potri.008G042700 [exp]	25.78	0.8968	Pt-ADR12.2
AT5G59240			Ribosomal protein S8e family p...		Potri.017G110000 [exp]	25.88	0.8923
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Potri.017G101000 [exp]	26.83	0.8970	Pt-RPL7.7
AT1G57720			Translation elongation factor ...		Potri.003G004700 [exp]	29.18	0.8909
AT3G02530			TCP-1/cpn60 chaperonin family ...		Potri.017G113601 [exp]	30.01	0.8807

Compare expression of checked genes

Potri.003G198501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.