Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07300 595 / 0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) AT2G44070 100 / 4e-23 NagB/RpiA/CoA transferase-like superfamily protein (.1) AT1G53900 99 / 4e-22 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT1G53880 99 / 4e-22 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT1G72340 93 / 2e-20 NagB/RpiA/CoA transferase-like superfamily protein (.1) AT5G38640 92 / 1e-19 NagB/RpiA/CoA transferase-like superfamily protein (.1) AT1G48970 86 / 6e-18 NagB/RpiA/CoA transferase-like superfamily protein (.1) AT2G05830 76 / 7e-15 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T126106 [exp] 741 / 0 AT3G07300 595 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Potri.001G026100 [exp] 701 / 0 AT3G07300 632 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Potri.010G068600 [exp] 528 / 0 AT3G07300 482 / 3e-170 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Potri.001G163300 [exp] 100 / 3e-23 AT1G53900 589 / 0.0 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) Potri.003G072100 [exp] 94 / 5e-21 AT1G53900 587 / 0.0 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) Potri.004G103700 [exp] 87 / 3e-18 AT5G38640 792 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.006G219900 [exp] 76 / 5e-15 AT2G05830 526 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016349 [exp] 616 / 0 AT3G07300 624 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Lus10002762 [exp] 610 / 0 AT3G07300 624 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Lus10037451 [exp] 98 / 4e-23 AT1G53900 479 / 6e-172 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) Lus10003938 [exp] 97 / 5e-22 AT1G53900 597 / 0.0 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) Lus10027234 [exp] 87 / 5e-18 AT5G38640 704 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1) Lus10038944 [exp] 84 / 5e-17 AT5G38640 694 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1) Lus10001970 [exp] 73 / 6e-14 AT2G05830 538 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3.4) Lus10008417 [exp] 73 / 9e-14 AT2G05830 543 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0246 [poplar] [flax] ISOCOT_Fold PF01008 [poplar] [flax] IF-2B Initiation factor 2 subunit family
Representative CDS sequence Show only first row Show all	>Potri.003G199301.1 pacid=42785239 polypeptide=Potri.003G199301.1.p locus=Potri.003G199301 ID=Potri.003G199301.1.v4.1 annot-version=v4.1 ATGCCGGACGTGCAAGCTCTTGTCAATGATTTTCTTATCAAGCTTAAAAAACGTAAGATTGAGGGTTCGCAGGCGACGGCGAGGCAGGCTGCTGAACTGT TACGATCAGTTATTTCGCAACAGCGAGTGCCTTACACGAATCAGGCTGGAGCTTTAATTGATGCTGTGAGGGCTGTTGGGGAGCAGCTGATTGCTGCCAA TCCTGTCGAGTTAGCTGTGGGTAATATTGTGAGGCGCGTTTTGCATATTATTAGGGAGGAGGATCTTTCTCTGACGACTGCTGCTATTTCGGGTTTGAAT TTATCAGCAACAAGTGATGGGGATGATGATGATGATGGTGATGGCGAGCGAGATGAGCATACAGTTCTATCAGCTGCTGCTGCTGCGAGAAATGCTTTGC GTCCGCCTTCCTTGCAAACCCTACTGGAGGATATGCCTGAGTCAGTGGCTATTCCTCATACTTATTCATCGGGAGGTGATTCTGAAGGAAAAAGCAAATC TGCTGATAAAAGTTCAAGAACTCGAAGGTTGAAGCATGATGTCATTGAAGCAGTTAACGAGCTTATTCAGGATATTAACACTTGTCATGAACAGATTGCT GAACAAGCAGTGGAACATATTCATCAAAATGAGGTGATATTAACTTTAGGTAGTTCAAAGACAGTGTTAGAATTTCTTTATGCTGCAAAGGAGAAGAAAA GATCATTCCGGGTATTTGTTGCTGAGGGTGCTCCAAGGTATCAAGGGCATCTTCTTGCAAAAGAACTGGTCACAAGAGGTTTACATACCACTTTGATTAC TGACTCAGCAGTTTTTGCCATGATTTCCCGTGTGAACATGGTTATAGTTGGAGCTCATGCTGTAATGGCCAATGGTGGTGTGATAGTACCTGTTGGGCTG AATATGGTTGCACTTGCAGCTCAAAAGCATGCTGTACCTTTTGTCGTGCTTGCAGGCAGTCACAAGCTGTGTCCCTTGTACCCTCACAATCCTGAGGTCT TACTAAATGAATTGAGATCTCCATCCGAGCTTCTGGATTTTGGAGAATTCTCAGATTGCTTAGATTTTGGGAGCGGTACGGGCTCTCCTCTTCTTCATGT TGTCAATCCAGCATTTGATTATGTGCCACCAAAGCTTGTTAGTCTGTTTATCACTGACACTGGAGGGCACAATCCATCATACATGTACCGACTCATTGCA GATTATTACTCCGCCGATGATTTGGTGGTGCGAAGAAGGGTTGCTTTGGGAAATTGA
AA sequence Show only first row Show all	>Potri.003G199301.1 pacid=42785239 polypeptide=Potri.003G199301.1.p locus=Potri.003G199301 ID=Potri.003G199301.1.v4.1 annot-version=v4.1 MPDVQALVNDFLIKLKKRKIEGSQATARQAAELLRSVISQQRVPYTNQAGALIDAVRAVGEQLIAANPVELAVGNIVRRVLHIIREEDLSLTTAAISGLN LSATSDGDDDDDGDGERDEHTVLSAAAAARNALRPPSLQTLLEDMPESVAIPHTYSSGGDSEGKSKSADKSSRTRRLKHDVIEAVNELIQDINTCHEQIA EQAVEHIHQNEVILTLGSSKTVLEFLYAAKEKKRSFRVFVAEGAPRYQGHLLAKELVTRGLHTTLITDSAVFAMISRVNMVIVGAHAVMANGGVIVPVGL NMVALAAQKHAVPFVVLAGSHKLCPLYPHNPEVLLNELRSPSELLDFGEFSDCLDFGSGTGSPLLHVVNPAFDYVPPKLVSLFITDTGGHNPSYMYRLIA DYYSADDLVVRRRVALGN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07300			NagB/RpiA/CoA transferase-like...		Potri.003G199301 [exp]	0	1
AT2G46225		ABIL1, ABI1L1	ABI-1-like 1 (.1.2.3)		Potri.002G165900 [exp]	18.57	0.6812
AT3G53710		AGD6	ARF-GAP domain 6 (.1.2)		Potri.016G095100 [exp]	28.28	0.6923
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Potri.001G285100 [exp]	42.84	0.6280
AT2G41900	C3HZnF	OXS2	OXIDATIVE STRESS 2, CCCH-type ...		Potri.006G053900 [exp]	65.23	0.5707
AT4G28450			nucleotide binding;protein bin...		Potri.017G014700 [exp]	79.52	0.6402
AT5G52980			unknown protein		Potri.003G093800 [exp]	85.45	0.5953
					Potri.004G011701 [exp]	98.36	0.6322
AT1G01730			unknown protein		Potri.002G158500 [exp]	104.95	0.5632
AT5G59910		HTB4	Histone superfamily protein (....		Potri.010G230701 [exp]	117.02	0.6095
AT1G01920			SET domain-containing protein ...		Potri.014G077700 [exp]	124.09	0.5530

Compare expression of checked genes

Potri.003G199301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.