Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14180 172 / 2e-49 Trihelix ASIL2 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) AT1G54060 117 / 1e-29 Trihelix ASIL1 6B-interacting protein 1-like 1 (.1) AT3G58630 102 / 2e-24 Trihelix sequence-specific DNA binding transcription factors (.1) AT5G05550 96 / 1e-22 Trihelix sequence-specific DNA binding transcription factors (.1.2) AT3G11100 92 / 2e-21 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G10030 72 / 1e-13 Trihelix aspartate/glutamate/uridylate kinase family protein (.1.2) AT3G54390 69 / 7e-13 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G24490 63 / 9e-11 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) AT2G44730 55 / 4e-08 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) AT3G24860 54 / 4e-08 Trihelix Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T126206 [exp] 458 / 6e-162 AT3G14180 173 / 9e-50 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Potri.001G026000 [exp] 340 / 3e-115 AT3G14180 186 / 1e-54 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Potri.001G113600 [exp] 114 / 7e-29 AT3G58630 138 / 1e-38 sequence-specific DNA binding transcription factors (.1) Potri.003G118600 [exp] 112 / 2e-28 AT3G58630 139 / 5e-39 sequence-specific DNA binding transcription factors (.1) Potri.008G071300 [exp] 108 / 4e-27 AT5G05550 209 / 3e-67 sequence-specific DNA binding transcription factors (.1.2) Potri.001G179800 [exp] 79 / 3e-16 AT3G24490 206 / 2e-63 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.003G056000 [exp] 78 / 1e-15 AT3G24490 205 / 8e-63 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.010G186200 [exp] 72 / 3e-14 AT5G05550 149 / 3e-44 sequence-specific DNA binding transcription factors (.1.2) Potri.003G195300 [exp] 66 / 7e-12 AT3G54390 288 / 2e-96 sequence-specific DNA binding transcription factors (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008141 [exp] 156 / 9e-44 AT3G14180 271 / 3e-87 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10013179 [exp] 146 / 4e-40 AT3G14180 256 / 5e-81 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10020652 [exp] 123 / 2e-30 AT5G16860 344 / 2e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007273 [exp] 115 / 2e-29 AT3G14180 200 / 4e-62 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10025404 [exp] 114 / 2e-29 AT3G14180 197 / 1e-61 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10015282 [exp] 107 / 6e-28 AT3G58630 140 / 3e-41 sequence-specific DNA binding transcription factors (.1) Lus10025406 [exp] 110 / 8e-28 AT3G14180 202 / 3e-63 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10029889 [exp] 103 / 4e-25 AT3G14180 147 / 1e-40 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10028984 [exp] 70 / 1e-14 AT3G14180 86 / 7e-21 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10015281 [exp] 66 / 5e-13 AT3G58630 79 / 2e-18 sequence-specific DNA binding transcription factors (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF13837 [poplar] [flax] Myb_DNA-bind_4 Myb/SANT-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.003G200000.3 pacid=42785339 polypeptide=Potri.003G200000.3.p locus=Potri.003G200000 ID=Potri.003G200000.3.v4.1 annot-version=v4.1 ATGGAAGACGACGATGAGATACAGTCACACTCAAACACCACCGAATATTCCTCACCGTCACCACCACCACCGAACGGAAGAATCACCGTATCTGCTCCCG CCGCCGTGCATCCACAGCCGGTACCACCGCCACCGCAACAGAACAACAAGAACCGCTTAGCACTTGTTTTGCCGACGAAGCCGAAAGTGAACGGAGGCGG AGGAGGAGGAGGAGGGAGAGAGGACTGCTGGAGCGAAGGAGCAACGGCGGTGTTGATCGACGCCTGGGGAGAAAGGTACTTAGAGCTAAGCAGAGGGAAT TTGAAGCAGAAGCATTGGAAGGAGGTAGCGGAAATTGTAAGTAGTAGAGAGGATTATTCTAAGTCTTCGAAAATTGATATTCAATGTAAGAATAGAATTG ATACCGTGAAGAAAAAGTATAAATTGGAAAAAGCTAAAATTGCTTCAGGTGGAGGGCCGAGTGGTTGGCCTTTCTTTGATCCTTTGGATAGATTAATTGG CTCCACAGCGAGGATTCCTGTTGTTGGAAATGGTAATGTGGGTGGTAAAATTCCTACTAGGGTTCGTAGTGGTAGTAGGAGGGGTGGTGTGAATCAGTAT CATTTTCGGAATCAGAATGTGAAAATTCGGATTCTGAAACATGAGGAGGATGAGGATGATGAGGAGGAGGGTGAGGAAGAGGAGGGGGGTGCGGAATCGG ATGATAGTTTTCCGCCGATGAAGAAGAGGAGAGTGGTGGTGGAGAGGGAAGTGAGGGGGAAAGTGGGGAAGGAAAAAAGAGGAGGAGGGTGGGGGAATTC GATCAGGATGTTGACGCAAGCAATGGTGAAGTTTGGGGAAGCCTATGAGCAAGCTGAGAGTGCCAAGTTGCAGCAAGTGGTGGAGATGGAGAAGACGAGG ATGGAGTTCGTGAAAGAGTTGGAGTTGCAAAGGATGCAGTTTTTTATGCAGACACAGATGGGGATTTCGCAGTTGAAGAACGCGAGAAGGGGAGGGAATG CTACCAGTAATCATTATCATCATCAATACCATCGTCATCATACTGGTAACAATATTAATGCTAGCAATAATGTTAACAACAGTGATAGTGATAATTAA
AA sequence Show only first row Show all	>Potri.003G200000.3 pacid=42785339 polypeptide=Potri.003G200000.3.p locus=Potri.003G200000 ID=Potri.003G200000.3.v4.1 annot-version=v4.1 MEDDDEIQSHSNTTEYSSPSPPPPNGRITVSAPAAVHPQPVPPPPQQNNKNRLALVLPTKPKVNGGGGGGGGREDCWSEGATAVLIDAWGERYLELSRGN LKQKHWKEVAEIVSSREDYSKSSKIDIQCKNRIDTVKKKYKLEKAKIASGGGPSGWPFFDPLDRLIGSTARIPVVGNGNVGGKIPTRVRSGSRRGGVNQY HFRNQNVKIRILKHEEDEDDEEEGEEEEGGAESDDSFPPMKKRRVVVEREVRGKVGKEKRGGGWGNSIRMLTQAMVKFGEAYEQAESAKLQQVVEMEKTR MEFVKELELQRMQFFMQTQMGISQLKNARRGGNATSNHYHHQYHRHHTGNNINASNNVNNSDSDN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Potri.003G200000 [exp]	0	1
AT3G24080			KRR1 family protein (.1.2)		Potri.001G125200 [exp]	6.78	0.8333
AT5G09880			Splicing factor, CC1-like (.1)		Potri.007G009800 [exp]	9.64	0.8181
AT3G51980			ARM repeat superfamily protein...		Potri.003G158701 [exp]	14.83	0.7321
AT5G67320		HOS15	high expression of osmotically...		Potri.005G144400 [exp]	17.49	0.7580
AT4G03430		EMB2770, STA1	STABILIZED 1, EMBRYO DEFECTIVE...		Potri.013G135300 [exp]	24.49	0.7628
AT5G43490			unknown protein		Potri.017G058600 [exp]	26.45	0.8159
AT1G74250			DNAJ heat shock N-terminal dom...		Potri.009G018400 [exp]	27.23	0.7944
AT4G11560			bromo-adjacent homology (BAH) ...		Potri.001G104300 [exp]	27.27	0.7450
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Potri.010G204900 [exp]	29.56	0.7471
AT2G03150		EMB1579	embryo defective 1579, ATP/GTP...		Potri.010G166100 [exp]	31.36	0.7962

Compare expression of checked genes

Potri.003G200000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.