Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 634 / 0 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 508 / 1e-157 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G59218 225 / 5e-60 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58848 225 / 5e-60 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT3G50950 214 / 4e-57 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT1G58807 204 / 2e-53 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58602 193 / 9e-50 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT5G43470 186 / 4e-48 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G53350 184 / 3e-47 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58390 181 / 1e-46 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T126706 [exp] 1850 / 0 AT3G14470 565 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126806 [exp] 1829 / 0 AT3G14470 587 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200500 [exp] 1801 / 0 AT3G14470 594 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T127106 [exp] 1774 / 0 AT3G14470 594 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126306 [exp] 1744 / 0 AT3G14470 585 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126506 [exp] 1332 / 0 AT3G14470 575 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.005G007001 [exp] 1161 / 0 AT3G14470 647 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200800 [exp] 1109 / 0 AT3G14460 509 / 7e-157 LRR and NB-ARC domains-containing disease resistance protein (.1) Potri.001G029300 [exp] 1077 / 0 AT3G14470 676 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024173 [exp] 999 / 0 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039509 [exp] 963 / 0 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10007261 [exp] 913 / 0 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 883 / 0 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10016316 [exp] 780 / 0 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10005321 [exp] 618 / 0 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 602 / 0 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 582 / 0 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005218 [exp] 403 / 8e-121 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10002736 [exp] 374 / 2e-118 AT3G14470 317 / 1e-98 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF13191 [poplar] [flax] AAA_16 AAA ATPase domain
Representative CDS sequence Show only first row Show all	>Potri.003G200200.3 pacid=42785796 polypeptide=Potri.003G200200.3.p locus=Potri.003G200200 ID=Potri.003G200200.3.v4.1 annot-version=v4.1 ATGGCCGGGGCTTTAGTAGGAGGAGCTTTTCTTTCTTCTTTCCTTAATGTTTTGTTCGACAGGATGGCCTCTCCCCAGGTGGTTGCCTTCTTGAGAGGCC AAAAAGTCAATGATAGGCTGCTAACGAGGTTGGAGACAGCAATGACATCTCTCAGGGTGGTGCTTGACGATGCCGAGGAGAAGCAGATAACAAACCGAGC TGTGCGGGATTGGCTGGACCTGCTTAAAGACGCTGTCTATAAAGCCGACGACTTCTTGGATGAGATTGCTTATGAAGCTCTACGGCAGGAGTTGGAAGCT GAAGATCAAACCTTCACAGGTCAGACGCAGAGGCTTCTTTCTTTCATTAACCCACTTGAAATATTGGGCTCGAGAGAGATCGAAGAAAAATTAGACTTCC TCTTGCAGGATCTAGATCCCTTAGTTGAACGAATGGATGCCCTTGGTTTGATCAACCGCAATGTAGAAAGACCATCATCGCCTAAAAGACCAACAACTTC TCTGGTGGATGAATCTAGTATTTATGGTAGAGATGATGACAGGGAAGCAATACTGAAGTTGCTTCAACCAGACGATGCCAGTGGAGAAAACCCAGGTGTG GTTCCCATATGGGGAATGGGCGGGGTTGGTAAAACCACGCTTGCTCAGCTTGTATACAATAGCAGCGAAGTACAAGAGTGGTTCGGTCTCAAAGCCTGGG TTTGTGTTTCAGAAGATTTCAGTGTTTTGAGGTTAACCAAGGTGATCCTTGAGGAGGTCGGTTCAAAGTCTGATTCTGATAGTCTGAATAATCTCCAGCT TCAGTTGAAGAAGAGATTGCAGGGAAAGAGATTTTTGGTTGTTTTAGATGACGTTTGGAATGAAGATTATGATGAATGGGATAGGTTTCTTACCCCCCTG AAGGACGGATCACAAGGGAGTAAGATTCTTGTCACAACACGCAATGAAAGTGTAGCATCAGTCATGAGAACTGTTCGAACTCATCATCTAGAAGAATTGA CGGAAGAAAGCTGCTGGTCCGTGTTTGCCAAACATGCATTTCGTGGTAAAAATCCCAATGCTTATGAAGAGTTGCAAGAAATTGGAAGAGAAATAGTGAG AAAATGTAAAGGCCTTCCTCTAGCTGCAAAAACACTCGGAGGTCTGCTGCGCACCAAAAGAGATGTCGAGGAGTGGGAGAAGATATTGGAAAGCAATCTA TGGGATTTACCCAAAGGCAATATCCTCCCAGCCTTGAGATTAAGTTATCATTATCTCCTGCCACATCTGAAGCAGTGTTTTGCTTATTGTGCTATATTTC CAAAAGACTATTCATTTCGAAAGGATGAATTAGTGCTCCTGTGGATGGCAGAGGGCTTCTTAGTCGGCTCCGTAGATGATGAGATGGAAAAAGCAGGTGC TGAGTGCTTTGATGATCTCTTGTCAAGGTCGTTTTTCCAGCAATCAAGCTCATCATTTGTGATGCACGATCTCATGCATGACCTGGCTACCCATGTGTCC GGTCAATTTTGCTTCAGCTCCAGGTTGGGGGAAAATAATTCTTCCACGGCCACCAGAAGGACTCGACATTTATCACTCGTAGTAGATACGGGAGGCGGTT TTTCAAGCATAAAATTAGAAAACATCCGTGAAGCCCAACATCTACGCACATTCAGAACTTCTCCGCACAATTGGATGTGTCCTCCCGAATTTTATAAGGA GATCTTTCAGTCAACTCATTGTCGCCTACGAGTGCTATTCATGACTAATTGTAGAGATGCATCTGTGTTGTCATGTTCAACTAGCAAGTTGAAGCATTTG CGGTATTTGCATCTTTCCTGGTCAGATTTAGTAACGTTGCCTGAAGAAGCGAGTACTCTTCTCAATTTGCAAACTTTGATCTTGAGAAAGTGCCGACAAC TTGCTAGTCTACCTGATCTTGGAAATTTGAAGCATTTACGACATCTGAATCTTGAAGGAACAGGAATCGAAAGATTGCCTGCATCTCTGGAAAGGTTAAT CAACTTGCGGTATCTTAACATCAAATACACGCCTTTGAAAGAGATGCCACCACATATAGGTCAACTAACAAAGCTCCAAACGTTGACTGCCTTTCTCGTC GGAAGACAGAGTGAGACTAGCATTAAAGAATTGGGAAAACTACGACATCTACGGGGAGAACTTCATATTAGGAACCTTCAAAATGTGGTGGATGCTCGGG ATGCTGGTGAGGCAAATTTGAAAGGTAAAAAGCACCTTGATAAGCTGAGGTTTACATGGGATGGTGACACTCATGACCCGCAACACGTAACAAGCACTCT TGAGAAATTAGAGCCAAATAGAAAGGTGAAGGATCTTCAGATTGATGGTTATGGAGGTGTAAGGTTTCCGGAGTGGGTAGGAGAGTCCTCTTTCTCAAAT ATAGTGTCTTTGAGGCTCGTTAGTTGTAAAAACTGCACCTCCTTACCACCGCTCGGGCAATTAGCTTCTTTAGAGTATCTCTCAATTGAAGCATTTGATA AAGTTGTGACTGTGGGATCTGAGTTCTATGGGAATTGTACTGCTATGAAGAAGCCATTTGAATCGCTCAAAGAATTATCTTTTAAATGGATGCCAGAGTG GCGCGAGTGGATTTCAGACGAAGGCAGCCGGGAAGCCTTCCCTCTTCTAGAGGTGCTTTCAATCGAAGAATGCCCCCACCTTGCAAAGGCCCTACCTTGT CACCACCTTTCACGTGTAACAAGTCTTACAATTCGTGGATGTGAGCAGCTCGCGACTCCACTTCCTAGGATTCCTAGGCTGCACTCTCTCTCTGTTTCTG GATTCCACTCCCTAGAGTCCCTACCCGAGGAAATTGAGCAAATGGGTTGGTCACCCTCTGATTTAGAGGAAATTACAATCAAGGGCTGGGCTGCTCTCAA ATGCGTCGCACTGGACTTGTTCCCCAACTTAAATTATCTTTCTATCTATAACTGTCCAGATCTCGAATCACTATGTGCACATGAAAGACCTCTCAATGAT CTCACCTCTCTCCATTCTTTGTCTATCTCGCGGTGCCCTAAATTAGTTTCATTTCCCAAAGGAGGGTTACCTGCTCCAGTCTTGACACGACTTAAGTTAA AAGATTGCTGGAACTTGAAGCAGTTGCCTGAGAGCATGCATTCCCTCCTCCCATCCCTTGACCATTTGGAAATAAATGGTTGTTTAGAATTTGAGTTGTG TCCAGAAGGGGGTTTTCCCTCCAAATTACAATCACTTCGTATTTTCGATTGCAACAAACTAATTGCAGGCCGCATGCAATGGGGCTTGGAAACGCTCCCT TCTCTTTCACACTTTGGTATTGGTTGGGACGAAAATGTTGAATCCTTCCCTGAAGAGATGCTGCTGCCCTCAAGTCTTACATCTCTTAAAATCGATTCCC TAAAACACCTGAAATCTCTTGACTACAAGGGGCTTCAACACCTCACCTCTCTTAGAGCATTGACTATAAGTAACTGCCCTCTGCTTGAGTCCATGCCAGA AGAAGGGTTGCCCTCCTCCCTTTCTACTCTTGCAATTTACAGTTGTCCTATGCTGGGTGAAAGTTGTGAAAGGGAGAAAGGTAAAGATTGGCCCAAGATT TCTCACATTCCTCACATAGTTATTAGGAGACCAACATATTGA
AA sequence Show only first row Show all	>Potri.003G200200.3 pacid=42785796 polypeptide=Potri.003G200200.3.p locus=Potri.003G200200 ID=Potri.003G200200.3.v4.1 annot-version=v4.1 MAGALVGGAFLSSFLNVLFDRMASPQVVAFLRGQKVNDRLLTRLETAMTSLRVVLDDAEEKQITNRAVRDWLDLLKDAVYKADDFLDEIAYEALRQELEA EDQTFTGQTQRLLSFINPLEILGSREIEEKLDFLLQDLDPLVERMDALGLINRNVERPSSPKRPTTSLVDESSIYGRDDDREAILKLLQPDDASGENPGV VPIWGMGGVGKTTLAQLVYNSSEVQEWFGLKAWVCVSEDFSVLRLTKVILEEVGSKSDSDSLNNLQLQLKKRLQGKRFLVVLDDVWNEDYDEWDRFLTPL KDGSQGSKILVTTRNESVASVMRTVRTHHLEELTEESCWSVFAKHAFRGKNPNAYEELQEIGREIVRKCKGLPLAAKTLGGLLRTKRDVEEWEKILESNL WDLPKGNILPALRLSYHYLLPHLKQCFAYCAIFPKDYSFRKDELVLLWMAEGFLVGSVDDEMEKAGAECFDDLLSRSFFQQSSSSFVMHDLMHDLATHVS GQFCFSSRLGENNSSTATRRTRHLSLVVDTGGGFSSIKLENIREAQHLRTFRTSPHNWMCPPEFYKEIFQSTHCRLRVLFMTNCRDASVLSCSTSKLKHL RYLHLSWSDLVTLPEEASTLLNLQTLILRKCRQLASLPDLGNLKHLRHLNLEGTGIERLPASLERLINLRYLNIKYTPLKEMPPHIGQLTKLQTLTAFLV GRQSETSIKELGKLRHLRGELHIRNLQNVVDARDAGEANLKGKKHLDKLRFTWDGDTHDPQHVTSTLEKLEPNRKVKDLQIDGYGGVRFPEWVGESSFSN IVSLRLVSCKNCTSLPPLGQLASLEYLSIEAFDKVVTVGSEFYGNCTAMKKPFESLKELSFKWMPEWREWISDEGSREAFPLLEVLSIEECPHLAKALPC HHLSRVTSLTIRGCEQLATPLPRIPRLHSLSVSGFHSLESLPEEIEQMGWSPSDLEEITIKGWAALKCVALDLFPNLNYLSIYNCPDLESLCAHERPLND LTSLHSLSISRCPKLVSFPKGGLPAPVLTRLKLKDCWNLKQLPESMHSLLPSLDHLEINGCLEFELCPEGGFPSKLQSLRIFDCNKLIAGRMQWGLETLP SLSHFGIGWDENVESFPEEMLLPSSLTSLKIDSLKHLKSLDYKGLQHLTSLRALTISNCPLLESMPEEGLPSSLSTLAIYSCPMLGESCEREKGKDWPKI SHIPHIVIRRPTY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.003G200200 [exp]	0	1
AT1G45688			unknown protein		Potri.002G124600 [exp]	3.16	0.8263
AT3G63380			ATPase E1-E2 type family prote...		Potri.016G009300 [exp]	3.46	0.8072
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.006G110000 [exp]	5.91	0.7770
AT3G07500	FAR1_related		Far-red impaired responsive (F...		Potri.007G128900 [exp]	7.07	0.7803
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Potri.010G213200 [exp]	8.30	0.7310
AT1G19490	bZIP		Basic-leucine zipper (bZIP) tr...		Potri.006G114600 [exp]	10.90	0.7453
AT5G42340		PUB15	Plant U-Box 15 (.1)		Potri.004G205000 [exp]	18.02	0.7282
AT1G10020			Protein of unknown function (D...		Potri.009G084000 [exp]	18.89	0.6949
AT3G14470			NB-ARC domain-containing disea...		Potri.001G025400 [exp]	26.83	0.7488
AT5G17680			disease resistance protein (TI...		Potri.019G098500 [exp]	28.14	0.7617

Compare expression of checked genes

Potri.003G200200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.