Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54500 108 / 9e-28 unknown protein AT5G64170 66 / 9e-13 dentin sialophosphoprotein-related (.1.2) AT3G12320 40 / 0.0003 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T126406 [exp] 339 / 2e-117 AT3G54500 191 / 6e-55 unknown protein Potri.003G200600 [exp] 329 / 5e-111 AT3G54500 298 / 3e-93 unknown protein Potri.T127206 [exp] 329 / 4e-110 AT3G54500 355 / 2e-113 unknown protein Potri.T126906 [exp] 296 / 5e-99 AT3G54500 156 / 4e-41 unknown protein Potri.001G025100 [exp] 270 / 8e-88 AT3G54500 325 / 4e-102 unknown protein Potri.T126606 [exp] 238 / 3e-79 AT3G54500 191 / 2e-56 unknown protein Potri.001G205800 [exp] 69 / 8e-14 AT5G64170 334 / 6e-106 dentin sialophosphoprotein-related (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024170 [exp] 119 / 2e-31 AT3G54500 305 / 5e-94 unknown protein Lus10039553 [exp] 116 / 4e-30 AT3G54500 316 / 3e-98 unknown protein Lus10015846 [exp] 75 / 9e-16 AT5G64170 225 / 8e-66 dentin sialophosphoprotein-related (.1.2) Lus10009319 [exp] 74 / 2e-15 AT1G01860 417 / 4e-137 PALEFACE 1, Ribosomal RNA adenine dimethylase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G200300.2 pacid=42786964 polypeptide=Potri.003G200300.2.p locus=Potri.003G200300 ID=Potri.003G200300.2.v4.1 annot-version=v4.1 ATGACTTCAATAGTGCATCAATTAAGTTATCAAAGTTGGATGTCAGAATTAGACTTTTGTATTCGGGATAGCTTGTTCCGGCTGGCTCAAAGTGCAATGC AAAGGCATTATGCTAGTGATACTGGCAGTACAAACAATAGTAGCAGGGACGAACAAGTTGCTGCAAAAGAGGAAACCAGCAGTCAAAGAAGGGTGGTTAA GATGCCTGAGGTGGAAACAGTGACCAATCCCGTAGACCGGACCGTGGCTCATTTGCTGTTTCATAGACCGATGGATATTCCAGGGAAGCATCCTGATACA CCTGAATCACCTTTTTCAACCAAGCTCCCGTGTGAGCACAAGACAATGGGCCTAGCAAAGCTGTCAACGGGATGCCTGTCTGAGACTCCGAAAGGTAAAC CAAACTTTTCGCAAAGGGGGTCTCAACTTTCTAGTTTCTTGACCAATGCTCAGCCTGTAAGTCAGTGTAAAAGCAATCCTTGCTTAGACGCTTCAGAGGA TGCATCAAACAATGGGCCTGCTGATGAAGGAGCTAGGGAGGTTAAAGCCTCTCAATGA
AA sequence Show only first row Show all	>Potri.003G200300.2 pacid=42786964 polypeptide=Potri.003G200300.2.p locus=Potri.003G200300 ID=Potri.003G200300.2.v4.1 annot-version=v4.1 MTSIVHQLSYQSWMSELDFCIRDSLFRLAQSAMQRHYASDTGSTNNSSRDEQVAAKEETSSQRRVVKMPEVETVTNPVDRTVAHLLFHRPMDIPGKHPDT PESPFSTKLPCEHKTMGLAKLSTGCLSETPKGKPNFSQRGSQLSSFLTNAQPVSQCKSNPCLDASEDASNNGPADEGAREVKASQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54500			unknown protein		Potri.003G200300 [exp]	0	1
AT5G50740			Heavy metal transport/detoxifi...		Potri.015G099500 [exp]	1.73	0.9422
AT5G36740			Acyl-CoA N-acyltransferase wit...		Potri.002G051400 [exp]	4.00	0.9367
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.004G069700 [exp]	20.34	0.8526
					Potri.016G026532 [exp]	20.63	0.8507
AT1G80870			Protein kinase superfamily pro...		Potri.003G183100 [exp]	20.83	0.8964
AT4G31880			unknown protein		Potri.018G109600 [exp]	21.02	0.8999
					Potri.002G202000 [exp]	21.21	0.8726
AT5G10270		CDKC;1	cyclin-dependent kinase C;1 (....		Potri.006G024600 [exp]	23.40	0.8527	Pt-CDC2.5
AT5G52340		ATEXO70A2	exocyst subunit exo70 family p...		Potri.006G203900 [exp]	29.34	0.7813
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Potri.011G084201 [exp]	29.39	0.9202

Compare expression of checked genes

Potri.003G200300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.