Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 594 / 0 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 481 / 4e-146 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G59218 212 / 7e-56 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58848 212 / 7e-56 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT3G50950 204 / 8e-54 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT1G58807 201 / 2e-52 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58602 193 / 1e-49 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT3G07040 180 / 5e-46 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT1G58390 180 / 5e-46 Disease resistance protein (CC-NBS-LRR class) family (.1) AT4G27220 177 / 4e-45 NB-ARC domain-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T127106 [exp] 2652 / 0 AT3G14470 594 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126706 [exp] 2083 / 0 AT3G14470 565 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126306 [exp] 2044 / 0 AT3G14470 585 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200200 [exp] 1749 / 0 AT3G14470 634 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126506 [exp] 1701 / 0 AT3G14470 575 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126806 [exp] 1654 / 0 AT3G14470 587 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.005G007001 [exp] 1095 / 0 AT3G14470 647 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200800 [exp] 1038 / 0 AT3G14460 509 / 7e-157 LRR and NB-ARC domains-containing disease resistance protein (.1) Potri.001G029300 [exp] 1018 / 0 AT3G14470 676 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024173 [exp] 959 / 0 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039509 [exp] 932 / 0 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 853 / 0 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10007261 [exp] 849 / 0 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005321 [exp] 591 / 0 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 562 / 2e-176 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 530 / 9e-163 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10016316 [exp] 519 / 7e-162 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 384 / 8e-113 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10002736 [exp] 352 / 3e-109 AT3G14470 317 / 1e-98 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF13191 [poplar] [flax] AAA_16 AAA ATPase domain CL0173 [poplar] [flax] STIR PF13676 [poplar] [flax] TIR_2 TIR domain
Representative CDS sequence Show only first row Show all	>Potri.003G200500.2 pacid=42785546 polypeptide=Potri.003G200525.1.p locus=Potri.003G200500 ID=Potri.003G200500.2.v4.1 annot-version=v4.1 ATGGCGTCTTCTTCTTCTTCTTCTTCTTCTTTGTCTAGACCTGGTTGGGGTTACGATGTATTTCTAAGTTTTAGAGGTGAAGATACTCGCAAAAATTTTA CGGATCATCTTTACACTGCTTTACACCATGCAAGAATCCATGCATTTCGAGATGACGACGAACTTCGTAGAGGTGAAGAAATCTCCTTGCAACTCCTCAA AGCAATTCAAGAATCCAAGATTTCTATAGTGGTTTTCTCTAAGGGCTATGCTTCCTCCACTTGGTGTCTTGCTGAACTTGAAAAGATTCTTGATTGCAGA CACACAACTGGCCAGATTGTTCTACCTGTTTTCTATGATATCGATCCTTCTGATATTAGAAAACAGACGGGGAGTTTTGCTGAAGCCTTTGATAGACATG AAGAACGTTTTAAGGAAGAAATGGAGAAGGTCCAAAAGTGGAGAAAAGCTCTTATGGAGGCTGCAAATTTATCTGGGTTGGATCTTCGCAGTTTCGCAAA TGGGCATGAATCAAAATTAATTCAAAAGATTGTTGAAGAAGTTTCTAGTAAACTGAATCCCAGATTTTTGTTTGACGATATGCCGCTGAAGAGGTTGAAG ACAACAATGATATCTGGCGGTGGGCTGCTTGACGATGCTGAGGAGAAGCAGATAACAAATAGAGCTGTGCGGGATTGGCTGGCCGAGTATAAAGACGCTG TCTATGAAGCCGACGACTTCTTGGATGAGATTGCTTATGAAGCTCTACGGCAGGAGTTGGAAGCTGAAGCTCAAACCTTCATTAAACCACTTGAAATAAT GGGGTTGAGAGAGATAGAAGAAAAATCAAGAGGCCTCCAGGAGAGTCTAGATTACTTAGTAAAACAAAAGGATGCCCTTGGTTTGATCAACCGCACTGGA AAAGAACCATCATCGCCTAAAAGACGAACAACTTCTCTGGTGGATGAACGTGGTGTTTATGGTAGAGATGATGACAGGGAAGCAATACTGAAGTTGCTTC TATCAGATGATGCAAATGGACAAAACCTAGGTGTCGTTCCCATAGTGGGAATGGGCGGGGCTGGTAAAACCACGCTCGCTCAGCTTGTATACAATCACAG CAGAGTACAAGAGCGGTTCGGTCTCAAAGCTTGGGTTTGTGTTTCAGAAGATTTCAGTGTTTCGAAGTTAACCAAGGTTATCCTTGAGGGGTTCGGTTCA AAGCCTGATTTTGATAATCTGGATCCCCTCCAGCTTCAGTTGAAGGAGAGATTGCGGGGAAAGAAATTCTTGCTTGTTTTAGATGACGTTTGGGAGGAAG ATTATGCTGAGTGGGACAATTTGCTTACCCCCCTGAAGTGCGGAGCACAAGGGAGTAAGATTCTTGTCACAACACGGAATGAAAGTGTAGCAACAGTCAT GAGAACTGTTCCAACTCATTATCTAAAAGAATTAACGGAAGACAGCTGCTGGGCCGTGTTTGCGACTCATGCATTTCGAGGTGAAAATCCCAATGCTTAT GAAGAGTTACAAGAAATTGGTAGAGCAATAGCGAGAAAGTGTGAAGGCCTTCCTCTAGCTGCAATAACACTCGGAGGTCTGCTACGCACCAAAAGAGATG TCGAGGAGTGGGAGAAGATATTGAAAAGCAATCTATGGGATTTACCCAATGACGATATCCTCCCAGCTTTGAGATTAAGTTATCTTTATCTCCTGCCACA TATGAAGCAATGTTTTGCTTATTGTGCCATATTTCCGAAAGACTATTCATTTCAAAAGGATGAGTTAGTGCTCCTGTGGATGGCAGAGGGCTTCTTAGTC CACTCTGTAGATGATGAGATGGAAAAGGCAGGTGCTGAGTGCTTTGATGATCTCTTGTCAAGGTCGTTTTTCCAGCAATCAAGTGCCTCTCCCTCATCAT TTGTGATGCACGATATCATGCATGACTTGGCTACACATGTGTCCGGTCAATTTTGCTTCGGCCCGAATAATTCTTCCAAGGCGACTAGAAGGACCCGACA TTTATCACTCGTAGCAGGTACGCCACATACTGAAGATTGTTCTTTCAGCAAGAAATTAGAAAACATCCGTGAAGCTCAGCTTCTACGCACATTCCAAACT TATCCACACAATTGGATCTGTCCTCCCGAATTTTATAATGAGATCTTTCAGTCAACACATTGTCGCCTACGAGTGCTATTCATGACTAATTGTAGAGATG CATCTGTGTTGTCATGTTCAATTAGCAAGTTGAAGCATTTGCGGTATTTGGATCTTTCCTGGTCAGATTTAGTAACGTTGCCTGAAGAAGCGAGTACTCT TCTCAATTTGCAAACGTTGATCTTGGAATATTGCAAACAACTTGCTAGTCTACCTGATCTTGGAAATTTGAAGTATTTACGACATCTGAATCTTCAAAGA ACAGGAATCGAAAGGTTGCCTGCATCTCTGGAAAGGTTAATCAACTTGCGGTATCTTAACATCAAATACACGCCTTTGAAAGAGATGCCACCACATATAG GTCAACTGGCAAAGCTCCAAAAGTTGACTGACTTTCTCGTGGGAAGACAGAGTGAGACTAGCATTAAAGAATTGGGAAAGCTACGACATCTACGGGGAGA ACTTCATATTGGGAACCTTCAAAATGTGGTGGATGCTCGGGATGCTGTTGAGGCAAATTTGAAAGGTAGAGAGCACCTTGATGAGCTGAGGTTTACATGG GATGGTGACACTCATGACCCGCAACACATAACAAGCACACTTGAGAAATTAGAGCCAAATAGAAATGTGAAGGATCTTCAGATTGATGGTTATGGAGGTT TAAGGTTTCCGGAGTGGGTAGGAGAGTCCTCTTTCTCAAATATAGTGTCCTTGAAGCTCAGTAGATGTACAAACTGCACCTCCTTACCACCGCTCGGGCA ATTAGCTTCTTTAGAGTATCTCTCAATTCAAGCATTCGATAAAGTTGTGACTGTGGGCTCTGAGTTCTATGGGAATTGTACTGCTATGAAGAAGCCATTT GAATCCCTCAAAACATTATTTTTTGAAAGGATGCCAGAGTGGCGGGAGTGGATTTCAGACGAAGGCAGCCGGGAAGCCTACCCTCTTCTTCGGGATCTTT TCATCAGTAATTGCCCCAACCTTACAAAGGCGCTACCTGGTCACCACCTTCCAAGTTTAACAACACTTTCAATTGGAGGATGTGAGCAGCTCGCGACTCC ACTTCCTAGGTGTCCAATCATCAATTCAATTTACTTGCGCGATGCTTCTCGTACTCTGGGCTGGAGGGAATTAGATTTACTTTCAGGGTTGCACTCTCTC TATGTTTCTCGATTCAACTTCCAAGACTCCCTACTCAAGGAAATCGAGCAAATGGTATTTTCACCCACTGATATAGGAGATATTGCAATCGACGGCGTTG CTTCTCTCAAATGCATCCCACTGGACTTTTTCCCCAAGCTAAATTCTCTTTCTATCTTTAACTGTCCAGATCTCGGATCACTCTGTGCACATGAAAGACC TCTCAATGAGCTCAAATCTCTTCATTCTTTGGAAATCGAGCAGTGCCCTAAATTAGTTTCATTTCCCAAAGGAGGATTACCTGCTCCAGTCTTAACACAA CTTACGTTACGACATTGCAGAAACTTGAAGCGGTTGCCTGAGAGCATGCATTCCCTCCTCCCATCCCTTAACCATTTGCTAATAAGTGATTGTTTAGAAC TTGAGTTGTGTCCAGAAGGGGGTTTTCCCTCCAAATTACAATCACTTGAGATTTGGAAATGCAACAAACTCATTGCAGGCCGCATGCAATGGGGCTTGCA AACGCTCCCTTCGCTTTCACACTTTACAATTGGTGGCCACGAAAATATTGAATCCTTCCCTGAAGAGATGCTTCTGCCCTCAAGTCTTACATCTCTTACA ATCCATTCCCTAGAACACCTGAAATATCTTGACTACAAGGGACTTCAACACCTCACCTCTCTTACAGAATTAGTGATATTTCGCTGCCCTATGCTTGAGT CCATGCCAGAAGAAGGGTTGCCCTCCTCCCTTTCTTCTCTTGTAATTAACAATTGTCCTATGCTGGGTGAAAGTTGTGAAAGGGAGAAAGGTAAAGATTG GCCCAAGATTTCTCACATTCCTCGCATAGTTATTTTCCCAACATCAGCGGAGCAAAAGAGTAGCAGTTAA
AA sequence Show only first row Show all	>Potri.003G200500.2 pacid=42785546 polypeptide=Potri.003G200525.1.p locus=Potri.003G200500 ID=Potri.003G200500.2.v4.1 annot-version=v4.1 MASSSSSSSSLSRPGWGYDVFLSFRGEDTRKNFTDHLYTALHHARIHAFRDDDELRRGEEISLQLLKAIQESKISIVVFSKGYASSTWCLAELEKILDCR HTTGQIVLPVFYDIDPSDIRKQTGSFAEAFDRHEERFKEEMEKVQKWRKALMEAANLSGLDLRSFANGHESKLIQKIVEEVSSKLNPRFLFDDMPLKRLK TTMISGGGLLDDAEEKQITNRAVRDWLAEYKDAVYEADDFLDEIAYEALRQELEAEAQTFIKPLEIMGLREIEEKSRGLQESLDYLVKQKDALGLINRTG KEPSSPKRRTTSLVDERGVYGRDDDREAILKLLLSDDANGQNLGVVPIVGMGGAGKTTLAQLVYNHSRVQERFGLKAWVCVSEDFSVSKLTKVILEGFGS KPDFDNLDPLQLQLKERLRGKKFLLVLDDVWEEDYAEWDNLLTPLKCGAQGSKILVTTRNESVATVMRTVPTHYLKELTEDSCWAVFATHAFRGENPNAY EELQEIGRAIARKCEGLPLAAITLGGLLRTKRDVEEWEKILKSNLWDLPNDDILPALRLSYLYLLPHMKQCFAYCAIFPKDYSFQKDELVLLWMAEGFLV HSVDDEMEKAGAECFDDLLSRSFFQQSSASPSSFVMHDIMHDLATHVSGQFCFGPNNSSKATRRTRHLSLVAGTPHTEDCSFSKKLENIREAQLLRTFQT YPHNWICPPEFYNEIFQSTHCRLRVLFMTNCRDASVLSCSISKLKHLRYLDLSWSDLVTLPEEASTLLNLQTLILEYCKQLASLPDLGNLKYLRHLNLQR TGIERLPASLERLINLRYLNIKYTPLKEMPPHIGQLAKLQKLTDFLVGRQSETSIKELGKLRHLRGELHIGNLQNVVDARDAVEANLKGREHLDELRFTW DGDTHDPQHITSTLEKLEPNRNVKDLQIDGYGGLRFPEWVGESSFSNIVSLKLSRCTNCTSLPPLGQLASLEYLSIQAFDKVVTVGSEFYGNCTAMKKPF ESLKTLFFERMPEWREWISDEGSREAYPLLRDLFISNCPNLTKALPGHHLPSLTTLSIGGCEQLATPLPRCPIINSIYLRDASRTLGWRELDLLSGLHSL YVSRFNFQDSLLKEIEQMVFSPTDIGDIAIDGVASLKCIPLDFFPKLNSLSIFNCPDLGSLCAHERPLNELKSLHSLEIEQCPKLVSFPKGGLPAPVLTQ LTLRHCRNLKRLPESMHSLLPSLNHLLISDCLELELCPEGGFPSKLQSLEIWKCNKLIAGRMQWGLQTLPSLSHFTIGGHENIESFPEEMLLPSSLTSLT IHSLEHLKYLDYKGLQHLTSLTELVIFRCPMLESMPEEGLPSSLSSLVINNCPMLGESCEREKGKDWPKISHIPRIVIFPTSAEQKSSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.003G200500 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Potri.003G200080 [exp]	1.73	0.9776
AT5G36930			Disease resistance protein (TI...		Potri.019G021024 [exp]	6.00	0.9451
AT5G43730			Disease resistance protein (CC...		Potri.018G145528 [exp]	6.16	0.9031
AT3G14460			LRR and NB-ARC domains-contain...		Potri.017G015000 [exp]	6.48	0.9285
AT3G14470			NB-ARC domain-containing disea...		Potri.017G015300 [exp]	8.48	0.9119
AT3G14470			NB-ARC domain-containing disea...		Potri.017G127651 [exp]	8.77	0.9227
AT4G02550			unknown protein		Potri.009G022650 [exp]	10.39	0.9166
AT5G36930			Disease resistance protein (TI...		Potri.019G052000 [exp]	10.95	0.9073
AT1G25350		OVA9	ovule abortion 9, glutamine-tR...		Potri.010G122932 [exp]	11.83	0.8999
AT5G36930			Disease resistance protein (TI...		Potri.011G009400 [exp]	11.95	0.9133

Compare expression of checked genes

Potri.003G200500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.