Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54500 297 / 4e-93 unknown protein AT5G64170 97 / 5e-21 dentin sialophosphoprotein-related (.1.2) AT3G12320 50 / 2e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T127206 [exp] 1115 / 0 AT3G54500 355 / 2e-113 unknown protein Potri.001G025100 [exp] 847 / 0 AT3G54500 325 / 4e-102 unknown protein Potri.T126906 [exp] 739 / 0 AT3G54500 156 / 4e-41 unknown protein Potri.T126406 [exp] 673 / 0 AT3G54500 191 / 6e-55 unknown protein Potri.T126606 [exp] 501 / 4e-176 AT3G54500 191 / 2e-56 unknown protein Potri.003G200300 [exp] 328 / 2e-110 AT3G54500 108 / 8e-28 unknown protein Potri.001G205800 [exp] 91 / 6e-19 AT5G64170 334 / 6e-106 dentin sialophosphoprotein-related (.1.2) Potri.001G031800 [exp] 56 / 4e-08 AT5G06980 75 / 7e-15 unknown protein Potri.003G193800 [exp] 50 / 3e-06 AT3G12320 66 / 5e-12 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039553 [exp] 394 / 1e-128 AT3G54500 316 / 3e-98 unknown protein Lus10024170 [exp] 385 / 5e-125 AT3G54500 305 / 5e-94 unknown protein Lus10015846 [exp] 104 / 3e-23 AT5G64170 225 / 8e-66 dentin sialophosphoprotein-related (.1.2) Lus10009319 [exp] 101 / 5e-22 AT1G01860 417 / 4e-137 PALEFACE 1, Ribosomal RNA adenine dimethylase family protein (.1) Lus10024129 [exp] 58 / 9e-09 AT3G12320 80 / 8e-17 unknown protein Lus10005384 [exp] 56 / 5e-08 AT3G12320 79 / 1e-16 unknown protein Lus10008671 [exp] 54 / 3e-07 AT3G12320 65 / 1e-11 unknown protein Lus10026150 [exp] 53 / 4e-07 AT5G06980 66 / 4e-12 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G200600.15 pacid=42786272 polypeptide=Potri.003G200600.15.p locus=Potri.003G200600 ID=Potri.003G200600.15.v4.1 annot-version=v4.1 ATGGACCGATGGCCTAACTTGTCCTCATCTAATGCTGCCAAAACTGAGCAGGATTCCTTGGAAACTTCAATCTCTAACAATTTAACTGACATTACCAAAC TTGATTCATCAGCAGATCATCTTGATAAGGACACTGAGATTTTTCAAAATTCCCATGAAGGTAAAGAGCAAGGTGATTTTGTTGATTATGGCTGGGCTAG CATTGGAAGCTTTGATGATCTTGATCGAATTTTTAGCAATGATGACCCAATATTTGGCAATGTAAATCTTGGTAATGCGGATGAGCTATGGTCTTCTTCT AAAGATATAACTAACAGCCCGGTAAAGCCCTTTCCAATATCTGTGGCTTCGAGAGAAGAGTATGCACAAGAAGAGGACCGGCTGTTTACCCTTGGGTATG GAAAAATGAACGATCCTGCATCTCATGGTCTGCAGAATACTCAGGCAAGCCTTGATCATGTAGAATATGATGAAGCTGAAAACAAGCCTATACTGAAGGA GCAGACAGATTTGGCTGTTGTGGGAAAGAACACGGCGGCTAACTCTCAACTGACGGAAGAAAATGGTGCTTTGCCAAATGAATTGGCAAACAAGACTTAC AGGCAAAAGAAGATCTTGAAAGGTCGGGAAAAACTGGAAGAAAAAGGTGAACTGAAATCATCCCAAGATTTTTATGGAAACTGGACTTCATCTGGAATCC CAGCCTGTCAGCTTAAGAATCATTTTGCACCCCAAATTATGCAATCTTCTCCCCCTTCAATTCTCAGCCAACAGAAGCAGCTACAGGGTTCCGAGCAGTT GCAGTACCAGCAGATATCCAATCCATTTGTGGCCCCTTCTGCATACGGAAGTATTACAATTCCATATTCTATGCCTGTGTTGTCCCACATTCAGTCTGGG GATTTTAAGCATCAACCTTTAGCTTCTGGTTATGAAGTTTCTTCAGTTTCTTCAGGCAATGCAAATCCTATAAACAAGTTAGCTGACTGTCCAGTGAAAC CCCAGAGAATGACACCTCAGGAAAAGATTGAAAAATTAAGGAGGCGGCAACAAATTCAGGCAATGCTTGCCATTCAGAAACAGCAGCAGCAGCTTGTTCA TCAAAAGTGTTCCCAAGAAAATCAAATTCAGCATGTTGAAGGAGCTGACCTTGAAGTAGAGGATCTAAGTACACTTGCTTCATTTGACCCAAACTCACCT ATTGAGCAAGATGATTCCAATACAATCTCTCTGGCGGTTAATGATTATTCAATGGAGGACACGGTACTCTACAGGCTTCAAGATATTATTTCAAAGTTGG ATGTCAGAATTAGACTTTGTATTCGGGATAGCTTGTTCCGGCTGGCTCAAAGTGCAATGCAAAGGCATTATGCTAGTGATACTGGCAGCACAAACAATAG TAGCAGGGACGAACAAGTTGCTGCAAAAGAGGAAACCAGCAGTCAAAGAAGGGTGGTTAAGATGCCTGAGGTGGAAACAGAGACCAATCCCGTAGACCGG ACTGTGGCTCATTTACTGTTTCATAGACCGATGGATATTCCTGGGAAGCATCCTGATACACCTGAATCACCTTTTTCAACTAAGCTCCCGTGTGAGCACA AGACAATGGGCCTAGCAAAGCTGTCAACGGCAAGCCTGCCTGAGACTCCAAAAAGTAAACCAAACTTTTCGCAAAAGGGGTCTCAACTTTCTAGTCTCTT GACCAATGCTCAGGCTGTCAGTCAGTGTAAAAGCAATCCTTGCTTAAACGCTTCAGAGGATGCATCAAACAATGGGCCTGCAGATGAAGGAGCTAGGGAG GTTAAAGCCTCTCAATGA
AA sequence Show only first row Show all	>Potri.003G200600.15 pacid=42786272 polypeptide=Potri.003G200600.15.p locus=Potri.003G200600 ID=Potri.003G200600.15.v4.1 annot-version=v4.1 MDRWPNLSSSNAAKTEQDSLETSISNNLTDITKLDSSADHLDKDTEIFQNSHEGKEQGDFVDYGWASIGSFDDLDRIFSNDDPIFGNVNLGNADELWSSS KDITNSPVKPFPISVASREEYAQEEDRLFTLGYGKMNDPASHGLQNTQASLDHVEYDEAENKPILKEQTDLAVVGKNTAANSQLTEENGALPNELANKTY RQKKILKGREKLEEKGELKSSQDFYGNWTSSGIPACQLKNHFAPQIMQSSPPSILSQQKQLQGSEQLQYQQISNPFVAPSAYGSITIPYSMPVLSHIQSG DFKHQPLASGYEVSSVSSGNANPINKLADCPVKPQRMTPQEKIEKLRRRQQIQAMLAIQKQQQQLVHQKCSQENQIQHVEGADLEVEDLSTLASFDPNSP IEQDDSNTISLAVNDYSMEDTVLYRLQDIISKLDVRIRLCIRDSLFRLAQSAMQRHYASDTGSTNNSSRDEQVAAKEETSSQRRVVKMPEVETETNPVDR TVAHLLFHRPMDIPGKHPDTPESPFSTKLPCEHKTMGLAKLSTASLPETPKSKPNFSQKGSQLSSLLTNAQAVSQCKSNPCLNASEDASNNGPADEGARE VKASQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54500			unknown protein		Potri.003G200600 [exp]	0	1
AT1G73980			Phosphoribulokinase / Uridine ...		Potri.015G055400 [exp]	4.24	0.8420
AT2G39190		ATATH8	Protein kinase superfamily pro...		Potri.010G221000 [exp]	4.47	0.8515
AT3G57710			Protein kinase superfamily pro...		Potri.005G068000 [exp]	8.94	0.8112
AT1G52540			Protein kinase superfamily pro...		Potri.001G204000 [exp]	10.53	0.8377
AT5G45920			SGNH hydrolase-type esterase s...		Potri.004G053800 [exp]	23.87	0.8257
AT1G69870		NRT1.7	nitrate transporter 1.7 (.1)		Potri.010G034700 [exp]	37.68	0.7965
AT1G61670			Lung seven transmembrane recep...		Potri.006G109000 [exp]	46.15	0.7906
AT5G56760		SAT-52, AtSerat...	SERINE ACETYLTRANSFERASE 52, s...		Potri.013G109500 [exp]	46.37	0.8108	SAT.2
AT3G11560			LETM1-like protein (.1.2.3.4)		Potri.016G074900 [exp]	51.18	0.8106
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Potri.010G210900 [exp]	53.32	0.8076

Compare expression of checked genes

Potri.003G200600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.