Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54510 886 / 0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) AT3G01100 395 / 8e-128 ATHYP1, HYP1 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) AT1G58520 366 / 4e-116 RXW8 lipases;hydrolases, acting on ester bonds (.1.2.3) AT1G69450 361 / 1e-114 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) AT1G10090 358 / 6e-113 Early-responsive to dehydration stress protein (ERD4) (.1) AT4G15430 307 / 1e-93 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2) AT1G11960 304 / 2e-92 ERD (early-responsive to dehydration stress) family protein (.1) AT1G32090 300 / 1e-90 early-responsive to dehydration stress protein (ERD4) (.1) AT3G21620 299 / 2e-90 ERD (early-responsive to dehydration stress) family protein (.1) AT4G02900 293 / 3e-88 ERD (early-responsive to dehydration stress) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G115800 [exp] 438 / 5e-144 AT3G01100 866 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) Potri.002G113800 [exp] 402 / 5e-130 AT1G58520 827 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Potri.010G164100 [exp] 386 / 3e-124 AT1G69450 844 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.008G091200 [exp] 381 / 3e-122 AT1G69450 872 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.002G226800 [exp] 296 / 2e-89 AT3G21620 1105 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.014G156100 [exp] 296 / 3e-89 AT3G21620 1104 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.004G006000 [exp] 289 / 9e-87 AT4G22120 1139 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.003G099800 [exp] 285 / 5e-85 AT1G32090 1094 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.004G006100 [exp] 283 / 2e-84 AT4G22120 1113 / 0.0 ERD (early-responsive to dehydration stress) family protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043455 [exp] 900 / 0 AT3G54510 883 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Lus10005223 [exp] 398 / 2e-128 AT3G01100 895 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) Lus10004597 [exp] 389 / 1e-124 AT1G58520 845 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10004550 [exp] 383 / 1e-122 AT1G58520 842 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10037139 [exp] 374 / 2e-119 AT1G69450 890 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Lus10030431 [exp] 363 / 2e-115 AT1G69450 867 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Lus10010365 [exp] 354 / 7e-112 AT1G58520 800 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10002133 [exp] 303 / 1e-91 AT1G32090 1136 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Lus10002996 [exp] 301 / 5e-91 AT4G22120 1087 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10000660 [exp] 297 / 1e-89 AT4G02900 1113 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0416 [poplar] [flax] Anoctamin-like PF02714 [poplar] [flax] RSN1_7TM Calcium-dependent channel, 7TM region, putative phosphate CL0416 [poplar] [flax] PF13967 [poplar] [flax] RSN1_TM Late exocytosis, associated with Golgi transport
Representative CDS sequence Show only first row Show all	>Potri.003G200900.1 pacid=42786329 polypeptide=Potri.003G200900.1.p locus=Potri.003G200900 ID=Potri.003G200900.1.v4.1 annot-version=v4.1 ATGAATCCAGAAAGTCTTACTGCATCGGCAGCCATTAACTTTGGCTTGGCATTCATAGTTCTCTCACTCTTCTCCATTTTCAAGAAACAACCTTCTAATG CCTCCATTTACTACGCTCGTCGCCTCTCCAAACGACACCATGTTCACTTTGAGCAGTCTTTCACTCTTTCCCGCTTTCTTCCTTCAGTTGCTTGGATTCC TCGTGCTTTTCGAGTCACTGAAGATGAAGTTCTTGATATTGGTGGCCTTGATGCTCTCATCATTATCAGACTCTTCAAATTTGGGATATATTTCTTTGGA ATTTGTTCTCTTATTGGATTAGTGGTACTTCTGCCAATCAATTTCGGTGACCAAGATGAACAATCTAGCATCTACCATTCCATGGATCCTTTCACAATAT CAAATATTAGTGCAGGTTCGAACAGGCTTTGGGTGCATTTTACGTGCTTGTGGTTGATATCATTTTATGGATTATATCTGTTGTACAAGGAATATGACGG AATTTCGGTTAAACGGATCCAACTACTTCGGAACCTAAGGCATCAACCTGATCGGTTTAATGTTCTTGTTCGGCAAGTTCCCTTCTGCAATGAACACAAC GCTTATGGGTGCTCTGTTGATCACTTCTTCTCTAAACATCATCCTAACAGTTACTGTTCTTATCAGATGATATATGATGGAAAAGATATCGAAGATCTGC TGCACCAAGCAAAATATGTTGCGAGAAAGATAGAGGACATGAGAGGAAAGCTCACAGTTAAGAAACGAGACAAGGAAAGCTTACTCTTAGATGTATCTCA AGAAGATGATGTGAAAATAGCTTTGTTTGAGGAAAAGCAGCAAGAAATTGTTCGTAAGATTCGTCAATTACAGAACGAAAGTATGCTGAAAGGAAAGGAG TTGCCTGTTGCCTTTGTTACATTCAAGTCCCGACGTGGTGCAGCATTAGTTTCCCAAACTCAACAGCACTCACATCCACTCATATGGATCACGGAAATGG CTCCAGAACCAAGGGATGTATCATGGAGGAGTCTGGAAATTCCCTTTAAGATTTTGCCACTTTGCAAAATCGGGGTCGTTGTTGCAGCATCTCTCCTCAC AATTTTCTTTGCAGTCCCAGTTACAGCTGTTCAAGGAATAGCTAAACTTGAGAAACTTAAGAAATGGTTCCCCCCAGCCATGGCTATGGAGCTAATACCA GGATTAAGCTCCATTATTACAGGGTATCTTCCAAGTGCCATTCTCAAAGGCTTTATATATGTTGTTCCCTTTGCAATGCTTGGCATGGCTAAATTAGGCG GTTCGATTTCAAAGAGCAAGGAGGAGATTAAAGCTTGCAATATGGTTTTCTACTTTCTCGTGGGAAATGTATTCTTTTTGAGTTTGATATCAGGATCCCT ACTTGATGAGCTTGGAGAATATTTTACCCACCCTAGGAGTATTCCTAGTCATCTTGCCAGTGCTGTCTCTTCTCAAGCTGATTTTTTCGTGACATACATC TTAACAGATGGGTTGTCAGGATTTTCTTTGGAAATCCTTCAGCCCGGCTTGCTTGTTTGGGATGCCGTGAAATCACACACAGTTGGCGGATCAGGAGACG AGGAAAATCCTTACCTTTATTCATTGCCCTATTTTAGAATCATCCCTTCAGTCTCCCTATCAATACTCATTGGTATGGTATATGCAGTTGTCGCTCCATT GCTGCTTCCATTTCTTGTTGGCTACTTCTATCTAGGCTACGTTGTATATGTCAACCAGATTGAAGATGTTTACGAAACTGCTTATGATACATGCGGACAG TATTGGCCATACGTTCATCATTATATATTCGTCGGAATCATTCTTATGCAAATCACCATGATTGGTCTTTTTGGGCTGAAGTCAAAACCTTCTGCTTCCA TAGCCACAATTCCACTCTTATTGCTTACTATAATGTTCAATGAGTACTGCAAGATACGTTTTCTACCTACTTTTCGCCACTATTCTGTTAAGGATGCGGA TGAACATGATGAACTAGATAGGAAGTTCGGTAAGATGGAAATAAATTGTGAGAATGCCAGAAGTGCCTATTGTCAGCCCACTTTACAACCAACAAACTTC ATGGCATCAAAGTCTACTTCCTCGCAGCCATTGGTTTCTTCATTGTGA
AA sequence Show only first row Show all	>Potri.003G200900.1 pacid=42786329 polypeptide=Potri.003G200900.1.p locus=Potri.003G200900 ID=Potri.003G200900.1.v4.1 annot-version=v4.1 MNPESLTASAAINFGLAFIVLSLFSIFKKQPSNASIYYARRLSKRHHVHFEQSFTLSRFLPSVAWIPRAFRVTEDEVLDIGGLDALIIIRLFKFGIYFFG ICSLIGLVVLLPINFGDQDEQSSIYHSMDPFTISNISAGSNRLWVHFTCLWLISFYGLYLLYKEYDGISVKRIQLLRNLRHQPDRFNVLVRQVPFCNEHN AYGCSVDHFFSKHHPNSYCSYQMIYDGKDIEDLLHQAKYVARKIEDMRGKLTVKKRDKESLLLDVSQEDDVKIALFEEKQQEIVRKIRQLQNESMLKGKE LPVAFVTFKSRRGAALVSQTQQHSHPLIWITEMAPEPRDVSWRSLEIPFKILPLCKIGVVVAASLLTIFFAVPVTAVQGIAKLEKLKKWFPPAMAMELIP GLSSIITGYLPSAILKGFIYVVPFAMLGMAKLGGSISKSKEEIKACNMVFYFLVGNVFFLSLISGSLLDELGEYFTHPRSIPSHLASAVSSQADFFVTYI LTDGLSGFSLEILQPGLLVWDAVKSHTVGGSGDEENPYLYSLPYFRIIPSVSLSILIGMVYAVVAPLLLPFLVGYFYLGYVVYVNQIEDVYETAYDTCGQ YWPYVHHYIFVGIILMQITMIGLFGLKSKPSASIATIPLLLLTIMFNEYCKIRFLPTFRHYSVKDADEHDELDRKFGKMEINCENARSAYCQPTLQPTNF MASKSTSSQPLVSSL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54510			Early-responsive to dehydratio...		Potri.003G200900 [exp]	0	1
AT5G28780			PIF1 helicase (.1)		Potri.013G071501 [exp]	1.00	0.9658
AT5G34885			Protein of unknown function (D...		Potri.004G109232 [exp]	3.16	0.8422
AT5G26594		ARR24	response regulator 24 (.1)		Potri.001G055600 [exp]	24.24	0.8662
					Potri.010G007402 [exp]	32.92	0.8509
					Potri.001G276804 [exp]	63.05	0.8409
AT5G56510		APUM12	pumilio 12 (.1)		Potri.001G298000 [exp]	65.26	0.8409
					Potri.001G330250 [exp]	67.40	0.8409
AT1G52900			Toll-Interleukin-Resistance (T...		Potri.001G403800 [exp]	73.45	0.8409
AT1G55790			Domain of unknown function (DU...		Potri.001G438200 [exp]	77.22	0.8409
AT3G59600		NRPE8B, NRPD8B,...	RNA polymerase Rpb8 (.1)		Potri.013G120400 [exp]	78.66	0.7801	ATRPABC16.1

Compare expression of checked genes

Potri.003G200900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.