Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68940 119 / 2e-27 Armadillo/beta-catenin-like repeat family protein (.1.2.3) AT1G20780 106 / 2e-23 ATPUB44, SAUL1 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) AT1G76390 81 / 3e-15 PUB43 plant U-box 43, ARM repeat superfamily protein (.1.2) AT5G67340 65 / 2e-10 ARM repeat superfamily protein (.1) AT2G23140 65 / 2e-10 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT3G01400 60 / 3e-09 ARM repeat superfamily protein (.1) AT4G16490 59 / 6e-09 ARM repeat superfamily protein (.1) AT5G58680 57 / 2e-08 ARM repeat superfamily protein (.1) AT1G23030 55 / 2e-07 PUB11 ARM repeat superfamily protein (.1) AT3G46510 49 / 1e-05 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G024600 [exp] 1336 / 0 AT1G20780 107 / 1e-23 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Potri.002G175800 [exp] 352 / 1e-106 AT1G76390 201 / 2e-53 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.014G102000 [exp] 332 / 3e-99 AT1G76390 207 / 1e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.012G019900 [exp] 299 / 2e-87 AT1G76390 206 / 3e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.010G079200 [exp] 213 / 2e-57 AT1G20780 158 / 1e-39 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Potri.001G069501 [exp] 161 / 2e-40 AT1G68940 132 / 5e-31 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.002G007800 [exp] 157 / 1e-39 AT1G76390 1028 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.005G253400 [exp] 150 / 2e-37 AT1G76390 963 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.008G112900 [exp] 108 / 6e-24 AT1G68940 927 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034132 [exp] 880 / 0 AT1G76390 162 / 5e-41 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10043453 [exp] 878 / 0 AT1G76390 158 / 1e-39 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10005988 [exp] 294 / 1e-85 AT1G76390 244 / 4e-68 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10030224 [exp] 201 / 1e-53 AT1G20780 127 / 1e-29 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Lus10039402 [exp] 153 / 7e-38 AT1G76390 157 / 4e-39 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10030734 [exp] 133 / 4e-32 AT1G76390 854 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10013216 [exp] 112 / 4e-25 AT1G76390 1034 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10013050 [exp] 108 / 8e-24 AT1G68940 900 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Lus10040659 [exp] 98 / 1e-20 AT1G76390 286 / 1e-82 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10018246 [exp] 98 / 2e-20 AT1G76390 272 / 8e-78 plant U-box 43, ARM repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF05804 [poplar] [flax] KAP Kinesin-associated protein (KAP)
Representative CDS sequence Show only first row Show all	>Potri.003G201000.2 pacid=42787238 polypeptide=Potri.003G201000.2.p locus=Potri.003G201000 ID=Potri.003G201000.2.v4.1 annot-version=v4.1 ATGGAAAATCCTGATAGCAGAAGCATTTCTGAGATTGAATCAGAGCAACAAGCCTCGACAGAAGAGGTGGTATCACTTGCTAAGAACTCAGAATTCGATA GAGAAATATTTACTGAATTTGCAGTTCTACTAGACAAGTTCACACCGGTTCTTGTAGCAATAAAGGATAATGAGAAACTCATGGACAGACCGCCAGTCAA AAAGGGAGTTGAATCCATAGAGAAAGAGCTTACTCGAGCTAAGAAATTAATTGAAGGAGCTTGTTCAAGATCACCCGTTAAGCAAATTGTGGTTGTTACT CAAGAACTTGGGAGATCACTAGGCCTTGTGCTTTTTGCAAGCATTGATGCATCCACAGAAGTTAAACAAGATATTGCAGCATTGCACAGAGAATTGATGA ATGTGAAGTTTGATATCAGTTTTACACCAAGTCCAAGTCCAAGTCCAAGTCTCGGCTCTAGCCCTTGTGTAATTCATGGTCCAAGACCAAGCAAAGAATC CGGGTTCGTAAGTGAGCAGGGCTCTTTTATTAATGAAATTGAGGAGGAAAAGATTAGTCTTAGCATTGATGATGTAGTGTTACAACTCAAGTATGGTAAT GATGAAGAATTCAGGCTTGCACTTTTGGTCTTAAGTGATTTTATTAGGGATCAGGTAATTGATAAAGAGTGGATCCATGAAGAAGATATTATTCCAATTC TGTTTAATCGGCTAGGCTCGAGCAAGCCTCACAACAGGTTAACTATCATCCAGATACTGAGAATTCTCGCCTTGGACAATGATGAAAACAAGGAGAAAAT GACAGATGTAGTCTGCTTGTCAGGGTTGGTGAAATCTTTGGCACGTGATGCCGATGAAGGGAGGGAAGCTGTAGGACTGTTGTCAGAACTCTCAGATATT TCTGCAGTTAGGCGACGAATTGGAAGAATTCAAGGATGTATCGTTATGTTAGTCACCATGCTTAATGGGGATGATCCAACTGCTTCTCATGATGCAGCAA AGTTGTTGATTGCATTGTCAAGCAATACTCAAAATGTGCTTCATATGGCTGAGGCTGGTTACTTTAAACCTCTAGTTCATTGCCTGAAGGAAGGCTCTGA TATGAGCAAGATCCTCATGGCAACAGCAGTTTCAAGGATGGAGCTCACAGATCAGTGCAGAGCCTCCCTTGGTGAAGATGGAGCAGTTGAGCCCCTTGTC AAGATGTTTAAATCTGGAAAACTTGAAGCCAAGTTATCTGCTTTAAATGCATTACAAAATTTGTCAAACTTGACAGAAAATATAAAACGTTTGATCAGTT CAGGTATTGTATCACCCCTGCTCCAGCTACTGTTCTCCGTGACATCTGTCCTTATGACACTCAGGGAGCCAGCTTCTGCAATACTTGCAAGGATTGCTCA ATCAGAAACTATCCTGGTTAAAAAAGACGTGGCCCAGCAGATGCTCTCGCTTTTGAATCTTTCCAGTCCAGCGATTCAGTATAATCTTTTGCAAGCTCTA AATAGTATCGCATCCCACTCTAGTGCATCCAAAGTAAGAAGAAAAATGAAGGAAAATTGTGCAGTCCAGCTTCTTTTACCCTTTCTGACAGAAAGCAACA TCAAGATCAGAAGTGCTGCATTAAATTTGCTTTACACCCTTTCTAAAGATTCACCAGAAGAGTTCATGGAACAGCTTGGAGAATCCTATCTTATCAACAT AGTCAATATCATCTCATCATCAGCATCTGAGAGTGAAAAAGCCGCCGCAATCGGCATAGTAAGCAATCTTCCTGTTAGCAATAAGAAATCAACAGAAGTA CTGAAAAAGTTACATTTTCTGCCCATTCTGATCTCACTAATGAGTTCAGGTGCATCAACATCAACTTCAACAAAAACATGGTTAGAAGAGAGCATTGCAG GCGTACTTATTCGCTTTACCATTCCTTCTGATAAGAAATTGCAGCTTCTTTCAGCAGAACTAGGGGTGATTCCTGTCCTTTTGAAGTTGCTAGCAAGTGA ATCATCAGTAGCCAAGTGTAGAGCAGCAATCTCACTCGCACAACTATCGCAGAACTCAGTAGCTCTTCGAAAGTCCAGAAAATCACGGTGGACATGTATG CCTCCTTCCGCAGACACTTTCTGCCAAGTCCATGACGGCTATTGTGTCGTTAAAAGCACATTTTGTTTGGTCAAGGCCGGTGCTGTCCCTCCACTGATCC AAATATTGGAAGGTGAAGAGAGGGAAGCTGATGAAGCTGTCCTCAACGCCCTCGCAACTCTCTTGCAAGATGAAATCTGGGAGAGTGGAAGCCACTACAT GGCCAAAACGTCTGTTGTCCAGGCCATAATAAGAGTTTTGGAATCAGGAACTGTAAAGGCTCAAGAAAAAGCACTATGGATATTAGAGAGAATTTTTAGC ATTGAAGAACACAGATCACAACATGGAGAATCTGCTCAGGCGGTCCTCATCGATCTTGCACAAAATGGCCATCCAAGATTGAAACCCACAGTTGCAAAAG TATTGGCACGGCTTCAGCTATTGCAAGATCAATCTAGTTACTTTTAA
AA sequence Show only first row Show all	>Potri.003G201000.2 pacid=42787238 polypeptide=Potri.003G201000.2.p locus=Potri.003G201000 ID=Potri.003G201000.2.v4.1 annot-version=v4.1 MENPDSRSISEIESEQQASTEEVVSLAKNSEFDREIFTEFAVLLDKFTPVLVAIKDNEKLMDRPPVKKGVESIEKELTRAKKLIEGACSRSPVKQIVVVT QELGRSLGLVLFASIDASTEVKQDIAALHRELMNVKFDISFTPSPSPSPSLGSSPCVIHGPRPSKESGFVSEQGSFINEIEEEKISLSIDDVVLQLKYGN DEEFRLALLVLSDFIRDQVIDKEWIHEEDIIPILFNRLGSSKPHNRLTIIQILRILALDNDENKEKMTDVVCLSGLVKSLARDADEGREAVGLLSELSDI SAVRRRIGRIQGCIVMLVTMLNGDDPTASHDAAKLLIALSSNTQNVLHMAEAGYFKPLVHCLKEGSDMSKILMATAVSRMELTDQCRASLGEDGAVEPLV KMFKSGKLEAKLSALNALQNLSNLTENIKRLISSGIVSPLLQLLFSVTSVLMTLREPASAILARIAQSETILVKKDVAQQMLSLLNLSSPAIQYNLLQAL NSIASHSSASKVRRKMKENCAVQLLLPFLTESNIKIRSAALNLLYTLSKDSPEEFMEQLGESYLINIVNIISSSASESEKAAAIGIVSNLPVSNKKSTEV LKKLHFLPILISLMSSGASTSTSTKTWLEESIAGVLIRFTIPSDKKLQLLSAELGVIPVLLKLLASESSVAKCRAAISLAQLSQNSVALRKSRKSRWTCM PPSADTFCQVHDGYCVVKSTFCLVKAGAVPPLIQILEGEEREADEAVLNALATLLQDEIWESGSHYMAKTSVVQAIIRVLESGTVKAQEKALWILERIFS IEEHRSQHGESAQAVLIDLAQNGHPRLKPTVAKVLARLQLLQDQSSYF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68940			Armadillo/beta-catenin-like re...		Potri.003G201000 [exp]	0	1
AT2G43500		NLP8	Plant regulator RWP-RK family ...		Potri.007G133400 [exp]	1.00	0.9231
AT2G30990			Protein of unknown function (D...		Potri.014G142800 [exp]	3.74	0.9078
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Potri.012G112000 [exp]	4.24	0.9094	Pt-ERD1.4
AT4G13630			Protein of unknown function, D...		Potri.017G055100 [exp]	4.24	0.9127
AT4G34890		ATXDH1	xanthine dehydrogenase 1 (.1)		Potri.009G054600 [exp]	4.89	0.9067
AT1G25350		OVA9	ovule abortion 9, glutamine-tR...		Potri.008G122200 [exp]	7.07	0.9014
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.016G021700 [exp]	8.66	0.8830
AT1G34300			lectin protein kinase family p...		Potri.010G103300 [exp]	8.66	0.9085
AT3G49160			pyruvate kinase family protein...		Potri.012G002500 [exp]	9.16	0.8961
AT1G06650			2-oxoglutarate (2OG) and Fe(II...		Potri.011G156200 [exp]	12.04	0.8802

Compare expression of checked genes

Potri.003G201000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.