Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-IMP4.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63780 489 / 2e-176 IMP4 Ribosomal RNA processing Brix domain protein (.1) AT4G01560 154 / 1e-44 MEE49 maternal effect embryo arrest 49, Ribosomal RNA processing Brix domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G024500 [exp] 596 / 0 AT1G63780 485 / 3e-175 Ribosomal RNA processing Brix domain protein (.1) Potri.002G182600 [exp] 158 / 7e-46 AT4G01560 481 / 2e-171 maternal effect embryo arrest 49, Ribosomal RNA processing Brix domain protein (.1) Potri.014G108400 [exp] 156 / 5e-45 AT4G01560 475 / 4e-169 maternal effect embryo arrest 49, Ribosomal RNA processing Brix domain protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035745 [exp] 506 / 0 AT1G63780 468 / 2e-168 Ribosomal RNA processing Brix domain protein (.1) Lus10037326 [exp] 502 / 0 AT1G63780 463 / 3e-166 Ribosomal RNA processing Brix domain protein (.1) Lus10030171 [exp] 154 / 4e-44 AT4G01560 508 / 0.0 maternal effect embryo arrest 49, Ribosomal RNA processing Brix domain protein (.1) Lus10007860 [exp] 144 / 2e-40 AT4G01560 495 / 7e-177 maternal effect embryo arrest 49, Ribosomal RNA processing Brix domain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0458 [poplar] [flax] IIaaRS-ABD PF04427 [poplar] [flax] Brix Brix domain
Representative CDS sequence Show only first row Show all	>Potri.003G201100.1 pacid=42787469 polypeptide=Potri.003G201100.1.p locus=Potri.003G201100 ID=Potri.003G201100.1.v4.1 annot-version=v4.1 ATGCTCCGTCGAAACATCCGATTAAGAAGAGAGTATTTGTACCGAAAAAGCTTAGAAGGCAAAGAGCGTTTACTTTACGAGAAGAAACGCAAAATCAAAG AAGCCCTAGCTGAGGGAAAACCGATTCCTACTGAGCTTCGAAACGAAGAAGCCGCTCTTCGTCAAGAAATTGATCTTGAAGATGAAAACACCGCAATACC GAGGAGTCATATTGATGACGAGTATGCGAAAGCGACCGAACGAGACCCGAAAATTTTATTGACTACGTCGAGGGATCCGAGCGCTCCTCTTACTCAGTTT GTTAAGGAATTGAAGTTTGTGTTTCCAAATGCGGAACGAATCAATCGTGGTGGTCAGGTTATATCTGAGATTATTGAAAGTTGTCGGGCACATGATTATA CTGATGTGATTTTGGTGCATGAGCATCGTGGTGTGCCAGATGGTTTGGTTATATGCCATCTACCATTTGGTCCAACTGCTTACTTTGAATTGCTCAATGT GGTTACTAGACATGACATTAAGGACAAGAAAGCCATCGGAACTATGCCTGAGGCCCACCCACATTTGATTCTTAACAATTTTAAATCCAAGCTGGGAGAA AGAACAGCAAATATTCTAAAACATCTTTTCCCTATGCCGAAGCAAGATACAAAACGCATCATTACTTTTGCAAATCAATCTGACTATATCTCCTTCAGAC ATCATATTTACGAAAAGCATGGAGGCCCTAAGTCTGTTGAGCTCAAAGAAATTGGTCCACGTTTCGAAATGCGGCTTTATCAGATAAAGTTAGGGACAGT GGATCAGACCGAAGCACAAAATGAATGGGTGCTTAGACCATACATGAACACAACAAAGAAACGGAAGTTTATTGGAGATTGA
AA sequence Show only first row Show all	>Potri.003G201100.1 pacid=42787469 polypeptide=Potri.003G201100.1.p locus=Potri.003G201100 ID=Potri.003G201100.1.v4.1 annot-version=v4.1 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALAEGKPIPTELRNEEAALRQEIDLEDENTAIPRSHIDDEYAKATERDPKILLTTSRDPSAPLTQF VKELKFVFPNAERINRGGQVISEIIESCRAHDYTDVILVHEHRGVPDGLVICHLPFGPTAYFELLNVVTRHDIKDKKAIGTMPEAHPHLILNNFKSKLGE RTANILKHLFPMPKQDTKRIITFANQSDYISFRHHIYEKHGGPKSVELKEIGPRFEMRLYQIKLGTVDQTEAQNEWVLRPYMNTTKKRKFIGD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63780		IMP4	Ribosomal RNA processing Brix ...		Potri.003G201100 [exp]	0	1	Pt-IMP4.2
AT5G61770		PPAN	PETER PAN-like protein (.1.2.3...		Potri.002G204900 [exp]	1.00	0.9214
AT4G37090			unknown protein		Potri.007G034600 [exp]	1.41	0.8923
AT4G25200		ATHSP23.6-MITO	mitochondrion-localized small ...		Potri.003G075900 [exp]	2.00	0.8795
AT1G20370			Pseudouridine synthase family ...		Potri.005G247000 [exp]	2.64	0.8693
AT3G18760			Translation elongation factor...		Potri.018G113200 [exp]	3.87	0.8737
AT5G52820			WD-40 repeat family protein / ...		Potri.009G058000 [exp]	4.89	0.8643
AT4G39740		HCC2	homologue of copper chaperone ...		Potri.005G076700 [exp]	6.24	0.8236
AT4G04190			unknown protein		Potri.009G146100 [exp]	9.48	0.8590
AT4G36680			Tetratricopeptide repeat (TPR)...		Potri.005G125400 [exp]	9.79	0.8836
AT1G55870		ATPARN, AHG2	ARABIDOPSIS THALIANA POLY\(A\)...		Potri.001G368401 [exp]	12.96	0.8405

Compare expression of checked genes

Potri.003G201100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.