Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38770 2320 / 0 EMB2765 EMBRYO DEFECTIVE 2765, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G47010 119 / 1e-26 ATUPF1, UPF1, LBA1 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) AT4G30100 102 / 2e-21 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G19120 100 / 1e-20 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G16800 95 / 4e-19 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G03270 91 / 3e-18 DNA-binding protein, putative (.1) AT1G65810 87 / 9e-17 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G35970 79 / 3e-14 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G52090 77 / 5e-14 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37140 76 / 2e-13 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G024401 [exp] 125 / 1e-33 AT2G38770 89 / 7e-22 EMBRYO DEFECTIVE 2765, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G148100 [exp] 114 / 2e-25 AT5G47010 2008 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Potri.003G086400 [exp] 113 / 9e-25 AT5G47010 2042 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Potri.002G093500 [exp] 104 / 4e-22 AT4G30100 1637 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G168300 [exp] 100 / 1e-20 AT4G30100 1620 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G054600 [exp] 91 / 5e-18 AT2G03270 1058 / 0.0 DNA-binding protein, putative (.1) Potri.010G253700 [exp] 91 / 7e-18 AT1G16800 1405 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G142960 [exp] 87 / 1e-16 AT1G65810 683 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G143450 [exp] 85 / 4e-16 AT1G65810 694 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016352 [exp] 2505 / 0 AT2G38770 2443 / 0.0 EMBRYO DEFECTIVE 2765, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10019778 [exp] 2505 / 0 AT2G38770 2444 / 0.0 EMBRYO DEFECTIVE 2765, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011054 [exp] 114 / 5e-25 AT5G47010 1977 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10003024 [exp] 114 / 6e-25 AT5G47010 2045 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10033462 [exp] 100 / 1e-20 AT4G30100 1589 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10042360 [exp] 96 / 6e-20 AT2G03270 613 / 0.0 DNA-binding protein, putative (.1) Lus10026309 [exp] 92 / 2e-18 AT2G03270 1085 / 0.0 DNA-binding protein, putative (.1) Lus10035717 [exp] 92 / 3e-18 AT1G16800 1196 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037303 [exp] 91 / 1e-17 AT1G16800 1190 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035776 [exp] 82 / 3e-15 AT1G65810 633 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF13087 [poplar] [flax] AAA_12 AAA domain CL0023 [poplar] [flax] P-loop_NTPase PF13245 [poplar] [flax] AAA_19 AAA domain CL0023 [poplar] [flax] PF16399 [poplar] [flax] Aquarius_N Intron-binding protein aquarius N-terminus
Representative CDS sequence Show only first row Show all	>Potri.003G201200.1 pacid=42786110 polypeptide=Potri.003G201200.1.p locus=Potri.003G201200 ID=Potri.003G201200.1.v4.1 annot-version=v4.1 ATGACGAAAGTATACGGCACCGGCGCTTACGATTTCAAGCGCCACCACGTGGCCGAGTACCCACTCGACCTCTCTGCAACCCGAACCGAGACCAAATCAG CCGATTCCAAACCTGGTTCAACAACTCTCCCCAGCTCAATCACTCTCTCCGAGATCCAACGCGACAGATTGACAAAGATTGCCTCCGCAAACTGGCTCAA AACGACCACTTCTGCTGTCGCGGATGGCGGAGACATGTTGGCGGAAGAGGAGGAGAGGAGGGGGTTTGATGCGGAACTGGTGAAGAAGATATATGAGACG GAGTTGAAGGTGAAAGAAGGGAGAAAGACTGTGCCTTTGCAGAGAGTGATGATTTTGGAAGTTAGTCAGTATTTGGAGAATTATTTATGGCCCAATTTTG ATCCTGAAACGGCAACGTTTGAGCATGTTATGTCTATGATTCTTATGATTAACGAGAAGTTTCGAGAAAATGTGGCAGCTTGGTCATGCTTTTATGATCG GAAGGATGTCTTCAAAAGATTTCTTGATAGAGTTCTTCACCTGAAGGAGGGGAGAGAGTTGAGTATAGCAGAGAAGACAAATTACCTAGTTTTCATGATT AATGCCTTTCAGAGTTTGGAAGATGAAATGGTGAGTCAGACGGTCCTCAGAATAGCAAGTTTTGAGTCATGGCACAGTTTGTCATATGGCCGCTTTCAGA TGGAGCTTTGTCTTAATAATAAATTGATTAAGAAATGGAGAAAGACAATAAGAAAAGAGGCTGAAGAGGCAACTAAACGAGGAGAAGTTTTCAACCCGTC AACCTCGCTTGAAGTGAGGTTTTTGAGGAATTTCACTGAAGAGTTTCTTGATGTGCTTGATTTCAAAGTTTTTCCCCAGAAAAGCTCTGCAAACGAAGAT GAAATTGATGATGCTGCAGTCTTGTATTGTGAGAGGTTTATGGAGTTTCTAATTGATCTGTTAAGTCAACTGCCAACAAGGAGGTATCTGAGGCCTCTTG TAGCTGATGTTGCTGTTGTTGCGAAATGTCATTTAAGTGCTCTCTACAGACATGAAAAAGGGAAACTCTTTGCTCAACTGGTTGACTTGCTGCAGTTCTA TGAGCGGTTTGAGATTAATGATTATTATGGCACACAATTAACAGATGATGAAGTGGTTCGATCTCATTATGAGCGTTTCCAAGCCTTCCAGCTCCTTGCC TTTAAGAAAATTCCCAAGCTGCGAGAACTTGCACTGTCTAACGTTGGTGCAATTCACAAGCGAGCTGATCTCTCCAAGAAATTGTCTGTGCTCTCTCCCG AAGAGTTGAAGGACTTGGTTTGCTGTAAGCTCAAACTGGTCTCCGCGGAAGATCCCTGGTCTGAAAGAGTTGATTTTCTTATTGAAGTCATGGTCTCCTT CTTTGAGAGACAGCAGTCTCAAAAAGAAGCAATAAATGCTCTTCCACTTTATCCAAATGAACAGATTATGTGGGATGAGAGTGTTGTGCCCAGCATTAAC TATTCAGGAGAAGGTTGTCTGGCACTTCCTAAACTTAATCTGCAGTTTTTAACACTTCATGATTACCTTTTAAGAAATTTTAATCTCTTCCGGCTTGAAT CAACATATGAGATTCGTGAAGATATTCAGGAAGCCACACCACATCTCCTTCCATACATTAATAACGAGGGAGAAACTGCTTTTCGTGGTTGGTCAAGAAT GGCTGTGCCAATAAAAGAATTTAAGATCACGGAGGTCAAACAGCCAAATATTGGTGAAGTCAAGCCATCATCTGTGACAGCAAAAATTACTTTTAGCATT TCGAGTTATAAAACACAAATAAGATCTGAATGGAATGCTCTGAAGGAGCATGATGTTTTATTCTTACTTTCAGTTTGCCCGTCATTTGAGCCTCTAAGTG CCGAGGAAGCTGAGAAGGCCAGTGTTCCAGAGAGGCTTGGCCTCCAATATGTGCGGGGATGTGAAATTATTGAGATCCGTGATGAGGAGGGAACACTCAT GAACGATTTCACAGGAAAAATTAAAAGGGAGGAGTGGAAACCACCAAAAGGTGAACTTAGAACTGTAACCGTTGCTTTAGATACAGCCCAGTACCACATG GATGTCACTGATATTGCAGAGAGAGGTGCTGAAGACATTTATGGGACATTTAATGTGCTGATGAGGAGGAAACCTAAGGAAAATAACTTCAAAGCAATCT TAGAATCTATAAGAGATCTTATGAATGAATATTGTATTGTTCCTGACTGGTTGCACAACATTTTTCTGGGCTATGGGGATCCTTCTGCAGCACAATGGAC CAAAATGCCTGATCATCTTCAGAAAGTAGATTTCAAAGATACTTTCTTGGATGCAGACCATTTAAAGGAGAGTTTTCCAGATCACCAGGTTTGTTTTGTA AATCCAGATGGTTCGGCTAACTTGAATCCAAGACCTCCTTTTCGAATTAGGCTTCCAGAAAAATTGAAGGGCTACACTCATGCAATTCCAGGGAATGAGA AATCTACTATTGATTCCAAAAATGGTGTCAATATGGTGGATTCTGGTAGGGAAAAAGAAGAACTTATTGTTGAGGCGTACATTCCTCCTGATCCAGGACC TTATCCTCAAGATCAGCCAAACCAGAACTCAGTCAGATTTACATCGACACAGATTGGAGCAATCATGTCTGGTATCCAGCCAGGACTAACCATGGTTGTG GGGCCTCCTGGTACTGGAAAGACTGATACAGCCGTGCAAATCATGAATGTTCTATATCATAATTGTCCATCCCAGAGAACATTAATAATCACCCATTCCA ACCAGGCCTTGAATGACCTGTTTGAGAAGATAATGCAGAGAGATGTGCCAGCACGGTATCTTCTTCGACTTGGTCAAGGTGAACAAGAACTAGCAACTGA TCTTGACTTCAGTAGGCAAGGGCGTGTCAATGCAATGCTTGTTCGACGGTTGGAATTGCTTAGCGAAGTGGAGAGGCTTGCAAGATCTCTCCAACTTCCT GAGGATGTAGCTTATACTTGTGAAACTGCTGGATACTTTTGGTTACTGCATGTATATTCACGTTGGGAGCAATTCCTTGCTACTTGTGCGGATAACGAAG ATAAACCAACACTTGTCCAGGACCGTTTTCCTTTTAAGGAGTTCTTCTCCAACACCCCTCAGCCAGTTTTTACTGGTCAATCATTTGAGAAAGACATGCG GGCAGCAAAAGGGTGCTTTCGTCATCTCAAGACTATGTTCCAAGAACTAGAAGAGTGTAGGGCTTTTGAATTGCTCAAATCAACAGCTGATCGAGCAAAT TACCTAATGACAAAACAGGCAAAGATAGTGGCAATGACCTGCACACATGCAGCTCTGAAGAGAAAGGACTTCCTCCAGTTGGGTTTTAAGTATGACAACT TGCTGATGGAAGAAAGTGCCCAAATATTGGAGATTGAAACTTTCATACCAATGTTACTTCAGAGGCAGGAGGATGGTCATGCACGTCTTAAACGCTGCAT ACTGATTGGTGATCATCACCAGTTGCCTCCCGTTGTGAAAAACATGGCTTTTCAGAAGTATAGCCACATGGATCAGAGCTTATTCACTAGGTTTGTTCGG CTGGGTATTCCTTATATTGAGCTCAATGCCCAGGGTAGAGCCAGGCCAAGCATAGCTAAGCTTTACAATTGGAGATACAGAGATTTGGGAGACCTTCCTT ATGTAAAGGAGGGGGCTATCTTTAAGAATGCAAATGCTGGGTTCTCCTATGATTACCAGTTAGTGGACGTGCCTGATTATCATGGGAGAGGCGAGACTGC TCCTTCTCCCTGGTTCTATCAAAATGAGGGAGAGGCTGAATACATTGTTAGTGTTTATATATACATGCGTTTGCTTGGATATCCTGCAAACAAGATCTCC ATATTGACCACTTACAATGGGCAAAAACTTCTTATTCGTGATGTTATCAACAGAAGATGCGTCCCTTATGACTTTATAGGCCCACCCTGCAAGGTCGCCA CTGTTGATAAGTTTCAAGGACAGCAAAATGATTTTATTTTGCTCTCTCTAGTGCGTTCTCGCTTTGTGGGTCACCTTCGTGATGTTAGAAGATTGGTTGT TGCCATGTCCCGTGCCCGACTTGGACTTTATGTATTTTGCCGCAGATCTCTGTTTGAACAATGTTATGAACTGCAGCCTACATTTCAACATTTGCTTCAG AGACCTGATCGCCTTGCGCTGAATTTTGGTGAAGTTTCGACATATACAGAGCGGCAAGTTGAAGACATTGGACATCCTTATTTTGTTAGCAGCGTTGAGG AGATGGGCCACATTGTAATGGATAAAATGAATCAATTGCATCAGGCACGTATGATGAGCTATCAGCATGAGCACTACATTGCGTATCCATCTGATGGACC TGCTCCTGCAAAGGGCGCAATAATCAATGATACACCAGACGAAAACGAGGCAGAGGAATCGAAACAGATTGATGATATTCCAAGTGGTGAAGACAACCAG GCAGAGGAATCAAAAGAGATGGATGCTATTCCAAGTGGTGAAGACGGGGATTTGCAACCTGATAACCAATTGAATGGGGAAAAGGTGAGCGAAGCTTGCC CAAATGATGAAGATGGCATGCCACCAAGAAGTGGTGCAAACGGGGAAACAAGCATGGAGGAGTAG
AA sequence Show only first row Show all	>Potri.003G201200.1 pacid=42786110 polypeptide=Potri.003G201200.1.p locus=Potri.003G201200 ID=Potri.003G201200.1.v4.1 annot-version=v4.1 MTKVYGTGAYDFKRHHVAEYPLDLSATRTETKSADSKPGSTTLPSSITLSEIQRDRLTKIASANWLKTTTSAVADGGDMLAEEEERRGFDAELVKKIYET ELKVKEGRKTVPLQRVMILEVSQYLENYLWPNFDPETATFEHVMSMILMINEKFRENVAAWSCFYDRKDVFKRFLDRVLHLKEGRELSIAEKTNYLVFMI NAFQSLEDEMVSQTVLRIASFESWHSLSYGRFQMELCLNNKLIKKWRKTIRKEAEEATKRGEVFNPSTSLEVRFLRNFTEEFLDVLDFKVFPQKSSANED EIDDAAVLYCERFMEFLIDLLSQLPTRRYLRPLVADVAVVAKCHLSALYRHEKGKLFAQLVDLLQFYERFEINDYYGTQLTDDEVVRSHYERFQAFQLLA FKKIPKLRELALSNVGAIHKRADLSKKLSVLSPEELKDLVCCKLKLVSAEDPWSERVDFLIEVMVSFFERQQSQKEAINALPLYPNEQIMWDESVVPSIN YSGEGCLALPKLNLQFLTLHDYLLRNFNLFRLESTYEIREDIQEATPHLLPYINNEGETAFRGWSRMAVPIKEFKITEVKQPNIGEVKPSSVTAKITFSI SSYKTQIRSEWNALKEHDVLFLLSVCPSFEPLSAEEAEKASVPERLGLQYVRGCEIIEIRDEEGTLMNDFTGKIKREEWKPPKGELRTVTVALDTAQYHM DVTDIAERGAEDIYGTFNVLMRRKPKENNFKAILESIRDLMNEYCIVPDWLHNIFLGYGDPSAAQWTKMPDHLQKVDFKDTFLDADHLKESFPDHQVCFV NPDGSANLNPRPPFRIRLPEKLKGYTHAIPGNEKSTIDSKNGVNMVDSGREKEELIVEAYIPPDPGPYPQDQPNQNSVRFTSTQIGAIMSGIQPGLTMVV GPPGTGKTDTAVQIMNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVPARYLLRLGQGEQELATDLDFSRQGRVNAMLVRRLELLSEVERLARSLQLP EDVAYTCETAGYFWLLHVYSRWEQFLATCADNEDKPTLVQDRFPFKEFFSNTPQPVFTGQSFEKDMRAAKGCFRHLKTMFQELEECRAFELLKSTADRAN YLMTKQAKIVAMTCTHAALKRKDFLQLGFKYDNLLMEESAQILEIETFIPMLLQRQEDGHARLKRCILIGDHHQLPPVVKNMAFQKYSHMDQSLFTRFVR LGIPYIELNAQGRARPSIAKLYNWRYRDLGDLPYVKEGAIFKNANAGFSYDYQLVDVPDYHGRGETAPSPWFYQNEGEAEYIVSVYIYMRLLGYPANKIS ILTTYNGQKLLIRDVINRRCVPYDFIGPPCKVATVDKFQGQQNDFILLSLVRSRFVGHLRDVRRLVVAMSRARLGLYVFCRRSLFEQCYELQPTFQHLLQ RPDRLALNFGEVSTYTERQVEDIGHPYFVSSVEEMGHIVMDKMNQLHQARMMSYQHEHYIAYPSDGPAPAKGAIINDTPDENEAEESKQIDDIPSGEDNQ AEESKEMDAIPSGEDGDLQPDNQLNGEKVSEACPNDEDGMPPRSGANGETSMEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Potri.003G201200 [exp]	0	1
AT1G55040			zinc finger (Ran-binding) fami...		Potri.013G022300 [exp]	1.00	0.9592
AT1G10270		GRP23	glutamine-rich protein 23 (.1)		Potri.004G227800 [exp]	1.41	0.9534
AT3G22430			unknown protein		Potri.008G152900 [exp]	2.44	0.9456
AT4G32420			Cyclophilin-like peptidyl-prol...		Potri.006G250900 [exp]	2.64	0.9266
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Potri.001G359200 [exp]	3.16	0.9319
AT5G18390			Pentatricopeptide repeat (PPR)...		Potri.019G025700 [exp]	4.24	0.9296
AT1G52380			NUP50 (Nucleoporin 50 kDa) pro...		Potri.001G179100 [exp]	4.69	0.9155
AT3G18020			Pentatricopeptide repeat (PPR)...		Potri.015G039300 [exp]	5.29	0.9330
AT1G21700		CHB4, ATSWI3C	SWITCH/sucrose nonfermenting 3...		Potri.005G180800 [exp]	6.00	0.9195	CHB904,CHB4.1
AT3G63390			unknown protein		Potri.002G047400 [exp]	6.00	0.9040

Compare expression of checked genes

Potri.003G201200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.