Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38800 146 / 3e-36 Plant calmodulin-binding protein-related (.1) AT3G54570 106 / 5e-24 Plant calmodulin-binding protein-related (.1) AT5G04020 98 / 2e-20 calmodulin binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G024100 [exp] 1249 / 0 AT2G38800 134 / 2e-32 Plant calmodulin-binding protein-related (.1) Potri.006G043900 [exp] 133 / 2e-31 AT5G04020 145 / 6e-35 calmodulin binding (.1) Potri.016G041100 [exp] 119 / 7e-27 AT5G04020 114 / 4e-25 calmodulin binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039544 [exp] 153 / 2e-38 AT3G54570 121 / 9e-29 Plant calmodulin-binding protein-related (.1) Lus10024175 [exp] 149 / 6e-37 AT3G54570 119 / 6e-28 Plant calmodulin-binding protein-related (.1) Lus10035417 [exp] 97 / 4e-20 AT5G04020 129 / 3e-30 calmodulin binding (.1) Lus10031023 [exp] 92 / 1e-18 AT5G04020 127 / 9e-30 calmodulin binding (.1) Lus10034717 [exp] 44 / 0.0003 AT5G39380 86 / 1e-19 Plant calmodulin-binding protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07839 [poplar] [flax] CaM_binding Plant calmodulin-binding domain
Representative CDS sequence Show only first row Show all	>Potri.003G201400.1 pacid=42785169 polypeptide=Potri.003G201400.1.p locus=Potri.003G201400 ID=Potri.003G201400.1.v4.1 annot-version=v4.1 ATGGTGCAAAGAAAGGTGCCCAACAAGCTTGGTATTCAAGCTGATCATGTTAAATCCGAGAAGCGGTTGGGGAACCTGAAACCAAGTTCTTGTCAGCATC AGGATGGCAAGAATAGAGGACCTGATATGAAGAAGAAAATGAAAAAGTCAAGATCAATCAAGATTTCAGATATTGAGAGCTTGAAATCATCATCACCTTT GAGGAAAGCCATATCACAGCCAGGAGAGCCGCCTCCTCTCAATGGTACGACAACTGCAGCAGCACCACAGAAGCAGTTTATGATCAAAACAACTGATGGT TCACCGAATTATATGAAGTCAACCAGTAGTTCAGAGGCAAGAAAGGAGCGTTCCCAGGTGAGTCCCTTGAATACTCAAACAGGTTCAAATGGTAAGAACC TGCATTACAGAAACTCTGGGAATTCGAGATTTAGTCCTGCTTCTGGTAGCAAACCAGCAAGAACTTTATCAAAGACATCTAGTTTGAAGCTGGTGAGGAC TCCAAGTTTTAAGCCAACGAGAGGTACTGCGAAGAAATGTTCTAGAGTAGCTCTTTGTGCTGATGTGAGTACACAAAAAGCTACCTGTTCTTCAACCCAG AAGGATTCAAAGTTTCCTGCGTACCTCATGCTTAATCCTGGGGGTACTGAAGCAGAGGGAACTTCAGTCATGAAGGTCTGCCCATACACCCACTGCTCTC TTAACGGTCATCAACACAAACCTGTAACTCCGCTGAGGTGCTTCTTGAAGGCAAGGAGGCGTTCGTTGAAGGTCCAGAATAGTATGAAATTGGAGGATTT ATCCCCACGCAGAGCCAGGCCATCCGGCGATGGAACAGAAGAAATTCATGGTGGACTGTTGGATTTTTCTGAAGACAAACCTGTGATACAAGAAGTTGGA AAGGATTTCTTTATTGAAATCTACGCTAACAATACAGAATATGGGGCCTATGAAACCGAAAAGAGGACAGAGAATGAAGGCAAGACAGCAGATGCTTTTT TGGGAGAACCTGAAGGACAGATGAATGAGTCCTGCTTTTACGCTGGCCATGAAGCCGCAGTTGAACAAGACAACAACAGTCACGTTTCTGAGAGCTCGTC AGATGAATCACAAGAATCAGAGATTGATTTTGAGGAAAACTTTAGTGATACCAATGCAGCAGAGATCAAAGTTGCAGTGGGTTTCGTCAGAGAAGAAGAA AAGCACGGGGATACAGACTGCTCATTGACCTTCTCTGAAGGAGAAGCAATCATGGGAAGCTGTGACAACAGGAGTGACATTGAAGGGGAATGCCAAGCGA GTATGGAGGAAGATGATAACATCTCTGAAGAAACTGGCATGGAGTGGGAGGAGGACCAACCTTCTACTTCAGAGATTGGTGCAGAAGATGATGATATGAA CAAACATGGTAAATTTTGGACCAAAGTAGGGTTCACACCAGAAATCGAGAAACTTGATTGGAGTGAGGATTCTGAGATCATAACGTCTGATGATGTAGTC AGCAACTGTACAGAGGAAATTCTAGCTGATGAGGTACTGCGAGAATTTTTTTCAGAGGAAACTGCCTCTATTGATATGCAATGCAGCGATAGCGATTCTG AATCAGATATCATACCCCACTATTGGCAGATTCTCCAATCTATCCAAGTGGCAGGGAACTTGGCTTATGATCAACCTTCTGCAGCTGAAGATGCATTTGA GGCACCAAAAACAGAGGAGAAAGATGAAGAAGCTGGGAGAGATCTGAGAGATGCTGTGACCACTTCAGCTCCAATAAGGGAATCAATTGTGGAACCAATA GGAGCCAGAGAGAACATTCAGGAGAATAATGAAACAGATAAATCTCTTGGAGATGGTGAAAATGGTTGCACGGCAGACATTTCAGCTGAAGCTTTAAATG GTCACCAGGAGGATAAATCTCTTCAAGCTGAAAATGCAGCTATAAGACCTCATATTTCTGAAAAGAGAGATGTGATTGGAACAAATAAAGAGGACGAAAT CGATCAGCTCATCGAAGTTGCAGAAAATAATCAAGAATTTGCCACTGCTGGATTCCCTGATGGTGAAGCTGGAGATGCAACAGAAGATCGAGAGCAAGTT TCCAATGCTGAATTGCAATTTGAAATCCATGTTTCTGATTCACCACAGGATTTTTCTGAAGCTGATCAAGATGATGCTGAACTACATGCCGATGGAAACC ACATGATAACTAGTGAAGAGGATAGTTCAAGTCAAGATCTTGTTGATGCCACCACTCCAACTGAGCCTCTTGACCACCAATTGGATGAGCAGGATGAGAC AAACCATGTTCTTGAGAACGAGAACTTATTTGAGGAAGATAAAGATGAAGCTAAAAAGATCGAAATCCTAACTGCCATGGATTTTGAGTCTCCGAGTAAT TCAAGAACGCATGAAATCAACTCAGCTGGAGATGATACAGGAGAGGTTGAGAAGACGGAAGTGGAAGTTTGTAACGAGTCAGATACAGCAGAAACCTTCC TCTCTGCCAATAATGGAGCAACGAGCACAGGATCAAAGCGCCCATTCGTATACACAAGAGGAAATCCCAATCAAGAACTTCAATATACCTGCAACACCAG GAAGTGGACAATCGGAGAAAAGAAACCCATCAAGGACTTGGACGAAGAGAGAGAATTCAACCCAAGAGAACCAAATTTCCTTCCCGTTGTTCCTGATCCA GAGGCAGAAAAGGTCGATCTCAGGCATCAAATGATGGATGACAGGAAAAATTCTGAGGAATGGATGCTTGATTATGCACTACGACAGGCTGTCACCAAAC TCGCTCCAGCTAGGAAGAGGAAGGTGGCACTACTTGTTGAAGCTTTTGAAAAAGTCTTGCCAACACCGAAATATGAAACTCATATCAGGCATACATCAGC AACATTTTCTCACACAAGACCCATTCAAGCTTGTAGCTGA
AA sequence Show only first row Show all	>Potri.003G201400.1 pacid=42785169 polypeptide=Potri.003G201400.1.p locus=Potri.003G201400 ID=Potri.003G201400.1.v4.1 annot-version=v4.1 MVQRKVPNKLGIQADHVKSEKRLGNLKPSSCQHQDGKNRGPDMKKKMKKSRSIKISDIESLKSSSPLRKAISQPGEPPPLNGTTTAAAPQKQFMIKTTDG SPNYMKSTSSSEARKERSQVSPLNTQTGSNGKNLHYRNSGNSRFSPASGSKPARTLSKTSSLKLVRTPSFKPTRGTAKKCSRVALCADVSTQKATCSSTQ KDSKFPAYLMLNPGGTEAEGTSVMKVCPYTHCSLNGHQHKPVTPLRCFLKARRRSLKVQNSMKLEDLSPRRARPSGDGTEEIHGGLLDFSEDKPVIQEVG KDFFIEIYANNTEYGAYETEKRTENEGKTADAFLGEPEGQMNESCFYAGHEAAVEQDNNSHVSESSSDESQESEIDFEENFSDTNAAEIKVAVGFVREEE KHGDTDCSLTFSEGEAIMGSCDNRSDIEGECQASMEEDDNISEETGMEWEEDQPSTSEIGAEDDDMNKHGKFWTKVGFTPEIEKLDWSEDSEIITSDDVV SNCTEEILADEVLREFFSEETASIDMQCSDSDSESDIIPHYWQILQSIQVAGNLAYDQPSAAEDAFEAPKTEEKDEEAGRDLRDAVTTSAPIRESIVEPI GARENIQENNETDKSLGDGENGCTADISAEALNGHQEDKSLQAENAAIRPHISEKRDVIGTNKEDEIDQLIEVAENNQEFATAGFPDGEAGDATEDREQV SNAELQFEIHVSDSPQDFSEADQDDAELHADGNHMITSEEDSSSQDLVDATTPTEPLDHQLDEQDETNHVLENENLFEEDKDEAKKIEILTAMDFESPSN SRTHEINSAGDDTGEVEKTEVEVCNESDTAETFLSANNGATSTGSKRPFVYTRGNPNQELQYTCNTRKWTIGEKKPIKDLDEEREFNPREPNFLPVVPDP EAEKVDLRHQMMDDRKNSEEWMLDYALRQAVTKLAPARKRKVALLVEAFEKVLPTPKYETHIRHTSATFSHTRPIQACS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38800			Plant calmodulin-binding prote...		Potri.003G201400 [exp]	0	1
AT2G39490			F-box family protein (.1)		Potri.008G050800 [exp]	1.41	0.8817
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.008G187700 [exp]	2.00	0.9004
AT5G60580			RING/U-box superfamily protein...		Potri.009G013300 [exp]	2.64	0.8573
AT1G70630			Nucleotide-diphospho-sugar tra...		Potri.008G186800 [exp]	3.87	0.8662
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Potri.014G043100 [exp]	5.19	0.8510
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.018G023900 [exp]	6.92	0.8447
AT2G31130			unknown protein		Potri.004G055300 [exp]	8.48	0.8574
AT5G53020			Ribonuclease P protein subunit...		Potri.015G012000 [exp]	9.16	0.8425
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Potri.005G004600 [exp]	9.79	0.8528
AT5G51910	TCP	TCP19	TCP family transcription facto...		Potri.015G138200 [exp]	10.58	0.7892

Compare expression of checked genes

Potri.003G201400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.