Plant FIBer expression Database

Potri.003G201500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G15750 140 / 6e-42 Essential protein Yae1, N-terminal (.1)
AT1G34570 139 / 6e-41 Essential protein Yae1, N-terminal (.1)
AT1G34550 60 / 2e-10 EMB2756 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G024000
[exp]
301 / 4e-105 AT3G15750 137 / 8e-41 Essential protein Yae1, N-terminal (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019775
[exp]
182 / 2e-57 AT1G34570 130 / 3e-37 Essential protein Yae1, N-terminal (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0255 ATP_synthase PF09811 Yae1_N Essential protein Yae1, N terminal
Representative CDS sequence
>Potri.003G201500.3 pacid=42784870 polypeptide=Potri.003G201500.3.p locus=Potri.003G201500 ID=Potri.003G201500.3.v4.1 annot-version=v4.1
ATGGAAGGTAGTTTTGCTAAGGAGCTTTATTCAGAAAGTTTGCAACTTTCAAATGCTGAATTGGGTTCTATGCCCATTGGGAATGATTGTTGTGAAGGTG
ACTTGCAGGATGATGGTGGGTCATTGTGGGATGATTCTGTTGAGGAGTTGGATAGAGAATCTGATTTAGACCGGGAGTGGCAGAGGAGACATGATCAATT
TCACACGATTGGATATCGTGATGGTCTCATAGCAGGGAAAGAAGATTCTGCACAAGAGGGATTTAATGTTGGTTTTAAGCAATCAGTGCTTGTAGGATAT
AACTGGGGTCTTGTTAGAGGTGTTACCAGTGTGGTTGCCTGCCTGCCAGATGACTTGAAGGAGAAGCTGATTGAAACGCAGGAAAAAAGAAACAAATTTC
AGGGTTTGTATGAATCAGTGCATTCTATTTCTACAGTGGATGCTCTCAAGTTCTTTCATGATGACATATTGAGAAAGAAAGCAATGGAGCAAAGGGAGCT
TGAGAAGGCAAGTTCTGATGTAGCCAGAATGAACAAGGATGATAGCTCATGCTGCAGTAATCTTGAAAATTATGTTGGAGAGCTTCAATCACTTCTTCTT
GACTCGCCTACAATCAAGTCACATTTATCAGTAAAGCAACTCCTGTACGGAACTGAATAA
AA sequence
>Potri.003G201500.3 pacid=42784870 polypeptide=Potri.003G201500.3.p locus=Potri.003G201500 ID=Potri.003G201500.3.v4.1 annot-version=v4.1
MEGSFAKELYSESLQLSNAELGSMPIGNDCCEGDLQDDGGSLWDDSVEELDRESDLDREWQRRHDQFHTIGYRDGLIAGKEDSAQEGFNVGFKQSVLVGY
NWGLVRGVTSVVACLPDDLKEKLIETQEKRNKFQGLYESVHSISTVDALKFFHDDILRKKAMEQRELEKASSDVARMNKDDSSCCSNLENYVGELQSLLL
DSPTIKSHLSVKQLLYGTE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G15750 Essential protein Yae1, N-term... Potri.003G201500
[exp]
0 1
AT3G17300 EMB2786 unknown protein Potri.008G100400
[exp]
1.73 0.7248
AT4G19540 INDH, INDL IND1(iron-sulfur protein requi... Potri.002G042600
[exp]
6.16 0.6769
AT4G01790 Ribosomal protein L7Ae/L30e/S1... Potri.014G112200
[exp]
9.64 0.6416
AT1G20575 DPMS1 dolichol phosphate mannose syn... Potri.002G010300
[exp]
12.04 0.6292
AT5G47840 AMK2 adenosine monophosphate kinase... Potri.019G078200
[exp]
12.24 0.6038
AT2G14285 Small nuclear ribonucleoprotei... Potri.006G167000
[exp]
14.24 0.6180
AT5G19330 ARIA ARM repeat protein interacting... Potri.010G090900
[exp]
15.49 0.6170
AT2G25570 binding (.1.2.3) Potri.001G219400
[exp]
17.97 0.5956
AT5G50870 UBC27 ubiquitin-conjugating enzyme 2... Potri.012G104100
[exp]
29.93 0.5958
AT4G35987 S-adenosyl-L-methionine-depend... Potri.007G057000
[exp]
30.98 0.6000

Potri.003G201500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.