Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50400 358 / 8e-116 ATPAP27, PAP27 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) AT4G24890 347 / 2e-111 ATPAP24, PAP24 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1) AT1G13750 345 / 1e-110 Purple acid phosphatases superfamily protein (.1) AT2G03450 236 / 1e-68 PAP9, ATPAP9 purple acid phosphatase 9 (.1) AT1G13900 228 / 6e-66 Purple acid phosphatases superfamily protein (.1) AT3G52780 121 / 2e-29 ATPAP20, PAP20 Purple acid phosphatases superfamily protein (.1.2) AT4G13700 119 / 1e-28 ATPAP23, PAP23 purple acid phosphatase 23 (.1) AT3G20500 118 / 2e-28 ATPAP18, PAP18 purple acid phosphatase 18 (.1) AT5G34850 118 / 4e-28 ATPAP26, PAP26 purple acid phosphatase 26 (.1) AT3G07130 116 / 2e-27 ATPAP15, PAP15 purple acid phosphatase 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G023400 [exp] 1131 / 0 AT5G50400 345 / 1e-110 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.012G097400 [exp] 355 / 3e-114 AT5G50400 947 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.010G158250 [exp] 342 / 4e-109 AT1G13750 967 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.015G095900 [exp] 336 / 7e-107 AT5G50400 838 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.010G158400 [exp] 327 / 1e-103 AT1G13750 962 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.008G096000 [exp] 322 / 2e-101 AT1G13750 927 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.010G160500 [exp] 236 / 7e-69 AT1G13900 903 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.006G063700 [exp] 134 / 1e-33 AT5G34850 798 / 0.0 purple acid phosphatase 26 (.1) Potri.001G423700 [exp] 123 / 5e-30 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039565 [exp] 946 / 0 AT5G50400 362 / 6e-117 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10016356 [exp] 911 / 0 AT4G24890 332 / 7e-106 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1) Lus10019772 [exp] 872 / 0 AT5G50400 287 / 2e-84 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10019771 [exp] 843 / 0 AT5G50400 317 / 4e-100 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10024179 [exp] 842 / 0 AT5G50400 331 / 3e-105 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10037079 [exp] 335 / 9e-107 AT1G13750 928 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10036904 [exp] 335 / 9e-107 AT1G13750 928 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10012144 [exp] 333 / 9e-106 AT5G50400 885 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10037091 [exp] 239 / 5e-70 AT1G13900 899 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10026652 [exp] 237 / 4e-69 AT1G13900 875 / 0.0 Purple acid phosphatases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF00149 [poplar] [flax] Metallophos Calcineurin-like phosphoesterase CL0163 [poplar] [flax] PF14008 [poplar] [flax] Metallophos_C Iron/zinc purple acid phosphatase-like protein C CL0159 [poplar] [flax] E-set PF16656 [poplar] [flax] Pur_ac_phosph_N Purple acid Phosphatase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.003G202200.1 pacid=42785423 polypeptide=Potri.003G202201.1.p locus=Potri.003G202200 ID=Potri.003G202200.1.v4.1 annot-version=v4.1 ATGAAACCCTCAGCAACTTCTTCTTTGATCATTCTAAACGTTTTCATCATTTTACTAGCCTTCATTCCCTTCTCTTCTTCCTATTTTTTGCCTCCCTCAG TCCTAGGATCAGCCATTGTGCACCAAAATTATACAGCAATATCGAGTTTTCGAGTACTGAATAGAAGAGGTTTAATTCAGTGTCGTCACCCCAACCCTTA CCTTCGAATCAATGTTAGCTCAGAAAACGGCCTCTTGTCAGACAATGAATATGTCAATGTTACTGTCAGTGGAGTTTTTCTTCCTTCGGATGATGACTGG GTTGCCATGATATCACCTTCTGATTCCGATGTCAAGAGTTGTCCTCTCAAAAAATCTAGATATGTGCAGACTGGTGATCTTAGTAAACTCCCTCTACTTT GTCACTATCCTGTTAAGGCACAATATATGAGCAATGATCCAGACTATCTGAAGTGCACTAAGCAGGAATGCAAGAAATACAACAATACTAATTGTGAAGT GTCAGCTTGCAGTGGTACAATATCATTTCATGTTATCAATATCAGGACCGATATTGAATTTGTCTTCTTTTCTGGAGGATTTGAAACTCCTTGCATTTTA ACAAGGTCTGGCCCTATGAAGTTTTCCAATCCAAACCAGCCACTACATGGGCATATCTCAAGCATAGATTCGACAGCAACATCGATGAGATTAACATGGG TTAGTGGGGGTGAGGAGACTCAACAAGTACAATATGGAGATGGAGAAACACTGACATCAACAGCAAAAACATTTTCGCAAGATGATATGTGCACTTCGGT TCTTCCAAGTCCTGCCAATGACTTTGGGTGGCATGACCCTGGGTACATTCATTCAGCAGTCATGACAGGACTAAGGCCTTCAACTACGTACTCCTACAGA TATGGAAGTGATTCGGTTGGCTGGAGTGATAAAATCCAGTTTCGAACTCCACCTGCTGGAGGATCTGATGAGCTCAAGTTTCTTGCATTTGGTGATATGG GGAAAGCCCCTCTTGATCCTTCTGTCGAACACTACATCCAGCCGGGATCTCTCTCAGTGATTAAAGCCGTGACCGATGAGGTGAAATCCGGCAGTGTAGA CTCCATCTTCCACATTGGAGACATAAGTTATGCAACAGGATTTCTAGTTGAATGGGATTTTTTCCTTCACCTCATAAGTCCTATGGCTTCTCAAGTCTCC TACATGACCGCAATCGGAAACCATGAAAGAGATTACATCGGTTCCGGATCTGTGTACATAACCCCTGACTCAGGTGGAGAATGTGGAGTTCCTTATGAGA CTTATTTTCCAATGCCAACCCCAGCAAAGGATAAACCATGGTACTCTATAGAACAAGGAAGTATCCACTTTACAGTCATTTCCACCGAGCATGATTGGAC TGAGAATTCTGAGCAGTATGAATGGATGACGAAGGATATGGGTTCCGTTGATCGATCAAAAACTCCTTGGCTAATTTTTACTGGACACAGACCAATGTAC TCCTCATCAACTAATCGATTGTTTAACGTCGACGACAGATTTTCTAAGGCTGTAGAGCCATTACTGCTGCAGCATAAGGTTGATCTTGCTTTCTTTGGCC ATGTTCACAATTATGAGAGAACATGTTCTGTTTATCAAAGCAATTGTCTGGCCATGCCAACAAAAGATCGAAATGGTATTGATACATACGATCACAGCAA TTACAGTGCTCCAGTGCAGGCAGTTATTGGTATGGCAGGCTTCAGTTTGACCAAGTTCTCAAAACCTGGTAGTTGGAGTTTGACAAGAATCTCTGATTTT GGCTATCTAAGAGGGCATGCTACCAAGGAAGACATAAACTTAGAGTTTGTGAACGCAAATACTAGGCAAGTACAGGACAGCTTCCGCATCACCAAACGGC AAAATAGATAG
AA sequence Show only first row Show all	>Potri.003G202200.1 pacid=42785423 polypeptide=Potri.003G202201.1.p locus=Potri.003G202200 ID=Potri.003G202200.1.v4.1 annot-version=v4.1 MKPSATSSLIILNVFIILLAFIPFSSSYFLPPSVLGSAIVHQNYTAISSFRVLNRRGLIQCRHPNPYLRINVSSENGLLSDNEYVNVTVSGVFLPSDDDW VAMISPSDSDVKSCPLKKSRYVQTGDLSKLPLLCHYPVKAQYMSNDPDYLKCTKQECKKYNNTNCEVSACSGTISFHVINIRTDIEFVFFSGGFETPCIL TRSGPMKFSNPNQPLHGHISSIDSTATSMRLTWVSGGEETQQVQYGDGETLTSTAKTFSQDDMCTSVLPSPANDFGWHDPGYIHSAVMTGLRPSTTYSYR YGSDSVGWSDKIQFRTPPAGGSDELKFLAFGDMGKAPLDPSVEHYIQPGSLSVIKAVTDEVKSGSVDSIFHIGDISYATGFLVEWDFFLHLISPMASQVS YMTAIGNHERDYIGSGSVYITPDSGGECGVPYETYFPMPTPAKDKPWYSIEQGSIHFTVISTEHDWTENSEQYEWMTKDMGSVDRSKTPWLIFTGHRPMY SSSTNRLFNVDDRFSKAVEPLLLQHKVDLAFFGHVHNYERTCSVYQSNCLAMPTKDRNGIDTYDHSNYSAPVQAVIGMAGFSLTKFSKPGSWSLTRISDF GYLRGHATKEDINLEFVNANTRQVQDSFRITKRQNR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Potri.003G202200 [exp]	0	1
AT5G02070			Protein kinase family protein ...		Potri.013G011700 [exp]	1.00	0.9987
AT5G23660		MTN3, SWEET12, ...	homolog of Medicago truncatula...		Potri.015G101700 [exp]	4.69	0.9986
AT5G63030		GRXC1	glutaredoxin C1, Thioredoxin s...		Potri.012G082800 [exp]	5.47	0.9855
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G020367 [exp]	9.79	0.9799
AT5G03980			SGNH hydrolase-type esterase s...		Potri.005G025000 [exp]	9.94	0.9958
AT3G22600			Bifunctional inhibitor/lipid-t...		Potri.010G085300 [exp]	10.09	0.9788
AT5G38760			Late embryogenesis abundant pr...		Potri.004G107900 [exp]	10.39	0.9776
					Potri.001G220400 [exp]	10.39	0.8815
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Potri.005G232650 [exp]	10.48	0.9958
AT4G08570			Heavy metal transport/detoxifi...		Potri.002G092200 [exp]	10.48	0.9711

Compare expression of checked genes

Potri.003G202200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.