Plant FIBer expression Database

Potri.003G202300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G30870 689 / 0 ATMUS81 ARABIDOPSIS THALIANA MMS AND UV SENSITIVE 81, Restriction endonuclease, type II-like superfamily protein (.1)
AT5G39770 264 / 1e-75 Restriction endonuclease, type II-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039566
[exp]
758 / 0 AT4G30870 695 / 0.0 ARABIDOPSIS THALIANA MMS AND UV SENSITIVE 81, Restriction endonuclease, type II-like superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0236 PDDEXK PF02732 ERCC4 ERCC4 domain
Representative CDS sequence
>Potri.003G202300.3 pacid=42785214 polypeptide=Potri.003G202300.3.p locus=Potri.003G202300 ID=Potri.003G202300.3.v4.1 annot-version=v4.1
ATGCAGAACCAAAAAAGGGTACTTTGCTCTGAAAATGAAGACCTTGTATCTTACATGCTACAAAAGAGGCAAGAATTGGTAGAAAGCCCTAAAGGGTTAT
CAGAGAATTTGGAAATGACACTTTCCAAGGCCTATAGCAGTGTGTGTTGTTCAACGACTCCTATCAAGACCCTCAAGGATTTATCTCAAATCAAAGGTGT
AGGTAAATGGATAGTTAGGCTAATGGAAGGGTTTTTTGATAACGGTTCAGGGAGTTCTGAACCAGAAGACTTGACCAAAAAGGGTAAGAGAGCACAAGTA
GCAAAACGTTATCTGCCACAAAGGAATTCTGTGTCATATGCCTTGCTTATAACCCTGTACAGGGAGACTGTAAACAGTAAAGAATTTATGCATAAACAAG
AGCTTATTGATGCTGCTGAAGTGAGCGGACTTTCTCGGGCACCAATTGTGCCAGATAAGGGGAAAGGGAAACCTTCACAATTTGGAAGTTCAAGGGAGTG
GTACAGTGGATGGAGTTGCATGACGACATTGATAAACAAAGGATTGGTTGTTAAATCAAGTTGCCCTGCCAAATACATGCTGACTGATGAAGGGCGGGAA
ACAGCACGTGAATGCCTCATTAGATCTCGTATGGAGGATCCTGGAGATAATTTGGCTAATTTAGAGGGGTCTTCTGATCTGAACATGCTTAATACATCAG
ATATGGAGTCTGCTCACCCTGATTCAGCTAGGGGAGCGACATTTACATCCGTTGCCTTAAGTAGGCAGAAGAAATCAATAGATGTTCCCCTTGAATCACT
TGAGAGGTTTGTGCGCATGGGGTACTCCAAAGAAAAAGTTCTTCTTGCTTTTTCTGAAGTCTCAGAAACTTCCCAGTACAAGGAGATATCATTACTTTGG
CCAGCTGTTCTGTGTCATCTTCGAGAAGATCTCATTTATGGTGTGCAATCAGAGCCTCAAACTCTAACAGAAGACTTCCGATCAACATCAACTGCTTGCA
CATTTTCAAATGGTCAAGTTGATCTTGCTACTAAGAGCAATCAAATGGGTTCCAATTGCGACGGTCGAAATATGCCAAATCTCACTTCTGCCTGTTCCAC
TTCTAGTTCATTTTCCATGAGAGCTTGCTCATCATCTGAGCATGCTATGAAAAAGTCATCTTCGGACCGCTTGGATACAAATATGAATGTTTTAAGTTTG
CCACCTCTGAGCTTGGGGGAGAGATTTGAGGATGTATATGAAGTTATCCTAATATTGGATGATCGAGAGCAGTTTGCCATTCAGTGTTCGAGGGGTAGGA
AACTTATTGAGTTCATTTGCAAGGAGCATAAAATCAAAATACAGGTTAGGCGGTTACCAGTTGGAGATGGAATCTGGATAGCTTGCCATAAATATCTGCT
CAGTGAATATGTTCTTGATTTTATTGTTGAGAGAAAGAAAGTTGATGATTTGCGTTCTTCAATAAGGGATAATCGTTATAGAGATCAGAAACTGAGGCTT
CTTAGATGTGGACTCAAGAAGCTGATATATCTTGTTGAAGGTGATCCAAATTCTTCTGAAGCTGCTGAAAGCATCAAAACAGCCTGTTTTACAACAGAGA
TACTGGAGGGCTTTGATGTTCAGAGAACAAATTCCTTGCGTGATACTCTGAAGAAATACGCTCATCTTACCCAGTCAATAACCCAATATTATAGTTTACC
GCTGCCTGAGGACCAGTCCAAAAGCACCAGGGTTTGTCCTCCTTTTGATGAATTTATCAAAAGGTGCCAAGATCTGGAGAAAATGACAGTTAGTGATGTA
TTTGCCATTCAGCTCATGCAGGTTCCACAAGTGACCGAGGAAACTGCTGTGGCTGTTCTGAATTTGTATCCAACACTTCTATCTCTAGCCCGTGCCTATT
CTCTTCTTGATGGTGATGTTTCTGCTCAAGAGGACATGCTTAGAAAGCAGAGTAGCAATGCTGTCAGTGCAGTTGCCAGTAGGAACATCTTCCAATTAGT
CTGGGGAAAATGA
AA sequence
>Potri.003G202300.3 pacid=42785214 polypeptide=Potri.003G202300.3.p locus=Potri.003G202300 ID=Potri.003G202300.3.v4.1 annot-version=v4.1
MQNQKRVLCSENEDLVSYMLQKRQELVESPKGLSENLEMTLSKAYSSVCCSTTPIKTLKDLSQIKGVGKWIVRLMEGFFDNGSGSSEPEDLTKKGKRAQV
AKRYLPQRNSVSYALLITLYRETVNSKEFMHKQELIDAAEVSGLSRAPIVPDKGKGKPSQFGSSREWYSGWSCMTTLINKGLVVKSSCPAKYMLTDEGRE
TARECLIRSRMEDPGDNLANLEGSSDLNMLNTSDMESAHPDSARGATFTSVALSRQKKSIDVPLESLERFVRMGYSKEKVLLAFSEVSETSQYKEISLLW
PAVLCHLREDLIYGVQSEPQTLTEDFRSTSTACTFSNGQVDLATKSNQMGSNCDGRNMPNLTSACSTSSSFSMRACSSSEHAMKKSSSDRLDTNMNVLSL
PPLSLGERFEDVYEVILILDDREQFAIQCSRGRKLIEFICKEHKIKIQVRRLPVGDGIWIACHKYLLSEYVLDFIVERKKVDDLRSSIRDNRYRDQKLRL
LRCGLKKLIYLVEGDPNSSEAAESIKTACFTTEILEGFDVQRTNSLRDTLKKYAHLTQSITQYYSLPLPEDQSKSTRVCPPFDEFIKRCQDLEKMTVSDV
FAIQLMQVPQVTEETAVAVLNLYPTLLSLARAYSLLDGDVSAQEDMLRKQSSNAVSAVASRNIFQLVWGK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G30870 ATMUS81 ARABIDOPSIS THALIANA MMS AND U... Potri.003G202300
[exp]
0 1
AT5G47750 PK5, D6PKL2 D6 protein kinase like 2 (.1) Potri.006G003800
[exp]
2.82 0.7716 Pt-CCSPK1.2
AT4G33400 Vacuolar import/degradation, V... Potri.014G029600
[exp]
3.16 0.8065
AT4G14770 CPP ATTCX2 TESMIN/TSO1-like CXC 2 (.1) Potri.005G051100
[exp]
8.48 0.7393
AT2G37340 RSZ33, ATRSZ33,... arginine/serine-rich zinc knuc... Potri.016G081700
[exp]
12.16 0.7263
AT4G17895 UBP20 ubiquitin-specific protease 20... Potri.003G092400
[exp]
13.56 0.7099 Pt-UBP21.1
AT5G22220 E2F_DP ATE2FB, E2F1 E2F transcription factor 1 (.2... Potri.009G161900
[exp]
15.65 0.6484 E2F1.1
AT1G35670 CPK11, ATCDPK2,... calcium-dependent protein kina... Potri.013G112500
[exp]
19.44 0.6970 Pt-CDPK2.4,CPK4
AT1G11420 ATDUF2 DOMAIN OF UNKNOWN FUNCTION 724... Potri.014G117800
[exp]
21.33 0.7102
AT5G49980 AFB5 auxin F-box protein 5 (.1) Potri.005G159300
[exp]
27.42 0.6960
AT5G56740 HAG02, HAC7, HA... histone acetyltransferase of t... Potri.013G068200
[exp]
29.32 0.7163

Potri.003G202300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.