Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51930 531 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT2G26490 259 / 8e-82 Transducin/WD40 repeat-like superfamily protein (.1) AT1G47610 246 / 4e-78 Transducin/WD40 repeat-like superfamily protein (.1) AT3G18950 239 / 5e-74 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24530 234 / 6e-73 Transducin/WD40 repeat-like superfamily protein (.1) AT1G49450 234 / 2e-72 Transducin/WD40 repeat-like superfamily protein (.1) AT3G50390 233 / 9e-72 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24130 226 / 7e-70 Transducin/WD40 repeat-like superfamily protein (.1) AT4G34380 224 / 3e-68 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50120 201 / 2e-60 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G022900 [exp] 738 / 0 AT3G51930 523 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G148400 [exp] 265 / 2e-84 AT3G18950 539 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G109500 [exp] 261 / 5e-83 AT3G18950 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G131100 [exp] 246 / 5e-76 AT3G50390 535 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G035100 [exp] 244 / 5e-76 AT3G50390 514 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G130400 [exp] 244 / 9e-76 AT2G26490 632 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G038400 [exp] 239 / 3e-74 AT2G26490 631 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G050900 [exp] 237 / 9e-74 AT1G24530 483 / 5e-170 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G076000 [exp] 226 / 6e-70 AT5G50120 417 / 5e-145 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039568 [exp] 585 / 0 AT3G51930 498 / 6e-176 Transducin/WD40 repeat-like superfamily protein (.1) Lus10024180 [exp] 570 / 0 AT3G51930 494 / 2e-174 Transducin/WD40 repeat-like superfamily protein (.1) Lus10016289 [exp] 249 / 2e-78 AT2G26490 597 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011655 [exp] 245 / 7e-77 AT2G26490 604 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032868 [exp] 241 / 2e-75 AT2G26490 580 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10022475 [exp] 239 / 2e-74 AT3G50390 536 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10034117 [exp] 228 / 2e-70 AT5G50120 391 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1) Lus10043466 [exp] 228 / 1e-69 AT5G50120 399 / 3e-136 Transducin/WD40 repeat-like superfamily protein (.1) Lus10006460 [exp] 219 / 5e-67 AT1G24530 414 / 3e-143 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011402 [exp] 212 / 2e-64 AT1G24530 406 / 3e-140 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.003G202700.1 pacid=42786803 polypeptide=Potri.003G202700.1.p locus=Potri.003G202700 ID=Potri.003G202700.1.v4.1 annot-version=v4.1 ATGGTCAGTGCTCCAATGGATCTTTTTGTGTCAGAAATCACCACTCCTTCAACCCCATTACTGTTTGCAGCAGCTACAAGTACCATTGGCATGAGTACTA GTAGCAGCAGCAGTATTTGCAGCAGTGAAGATAGCCCAGCAACATCTTTTCGCTTTGAGCTACAAGATGTGGGGTGTCGTAGTTATCCAAGCAAATCTTT ATCTGGGGCTTACTCGTATAGGCCCCTGGCTGTTTTATCAGGTCATGTTGGGTCAGTTTCTTGCTTGGCTTTATGTGGGGAGTTTATTTTGAGTGCTTCT CAAGGCAAGGATATTATAGTTTGGCAACAGCCTGATTTGAGGATGTTTACAAAGTTTGGTCAAGGTGATGGTTCTGTGAAGGCATTAGTGACTGTTGGTA GTAAGGTTTTTACTGCCCATCAAGATAGTAGAATTAGGGTGTGGAAGGTGTCAAGAAGGTCTGAAAATGTGTTTAGGCTTGTTGATACAATGCCTACTAC AAAGGATTATTTAGGGAAGTTTATGAAGCAAAGTAATTATGTGCAAACTAGGAGGCATCATAAGAAGTTATGGATTGAACATGCCGATAGTATTTCTTGT CTAACTGTTTATAATGGGTTGATTTATTCTGGTTCTTGGGATAAGACTCTTAAGGTTTGGAGGATATCAGATTTGAAGTGTTTGGAGTCAATTAAGGCTC ATGATGATGCTATAAATGGATTGGTGGCCTGTAAAGGGATAGTTTATTCAGCATCTGCAGATGGGAAAATTAAGGCTTGGGGGAAAGAGGGAAAGAGTTC ACATTCTTTGAAGGGGATTTTGGAGGGTCATAAAGATGTTTCACTTAATTCAGTGATTGTTTCAGATGATGGAAAGTGGGTCTATGGAGGAGCATCAGAT GGGTTTGTGATGGGGTGGGAAGGGAGCTATGATTTTTTGAGTTGGAAATTGGTGTCTGAGACAAAAGCACATCAAATGGCTGTTTTGTGCATGTGTTTAA TGGGGGAGTTTTTGTTTAGTGGATCTGCTGATAAGAGTATTAGTATATGGAAGAGAGAGGCTTTTGGCAAGCTTTCTAAAATTGGGGTCATAAATGGCCA TGAAGGGCCTGTCAAGTGTCTACAAGCATCACCTAATAATGTTGGTAGCGGGTTCTTGCTTTACAGTGGTGGCCTTGACAAAAGCTTAAGGGTCTGGTGG GTTCCCAAGCAATCTACGGCACAGAATACAGAGGAAAAATCCATCAGCTTGTGCTCGTAA
AA sequence Show only first row Show all	>Potri.003G202700.1 pacid=42786803 polypeptide=Potri.003G202700.1.p locus=Potri.003G202700 ID=Potri.003G202700.1.v4.1 annot-version=v4.1 MVSAPMDLFVSEITTPSTPLLFAAATSTIGMSTSSSSSICSSEDSPATSFRFELQDVGCRSYPSKSLSGAYSYRPLAVLSGHVGSVSCLALCGEFILSAS QGKDIIVWQQPDLRMFTKFGQGDGSVKALVTVGSKVFTAHQDSRIRVWKVSRRSENVFRLVDTMPTTKDYLGKFMKQSNYVQTRRHHKKLWIEHADSISC LTVYNGLIYSGSWDKTLKVWRISDLKCLESIKAHDDAINGLVACKGIVYSASADGKIKAWGKEGKSSHSLKGILEGHKDVSLNSVIVSDDGKWVYGGASD GFVMGWEGSYDFLSWKLVSETKAHQMAVLCMCLMGEFLFSGSADKSISIWKREAFGKLSKIGVINGHEGPVKCLQASPNNVGSGFLLYSGGLDKSLRVWW VPKQSTAQNTEEKSISLCS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51930			Transducin/WD40 repeat-like su...		Potri.003G202700 [exp]	0	1
AT3G51290			Protein of unknown function (D...		Potri.005G112300 [exp]	2.82	0.8596
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Potri.010G196000 [exp]	8.71	0.8602
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Potri.014G168100 [exp]	14.66	0.7995
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Potri.008G185500 [exp]	22.22	0.8073
AT4G14310			Transducin/WD40 repeat-like su...		Potri.008G169200 [exp]	27.12	0.8382
AT3G03130			unknown protein		Potri.019G046801 [exp]	33.31	0.8275
AT3G23750			Leucine-rich repeat protein ki...		Potri.006G073900 [exp]	35.55	0.7576	RHG4.2
AT3G15550			unknown protein		Potri.003G058600 [exp]	36.12	0.8342
AT1G12380			unknown protein		Potri.012G129100 [exp]	38.49	0.7232
AT1G16670			Protein kinase superfamily pro...		Potri.010G221400 [exp]	39.49	0.7427

Compare expression of checked genes

Potri.003G202700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.