Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ABI8.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08550 699 / 0 ABI8, ELD1, KOB1 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1) AT3G57200 622 / 0 unknown protein AT2G41451 590 / 0 unknown protein AT3G61030 117 / 5e-28 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G60950 116 / 2e-27 C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G022700 [exp] 888 / 0 AT3G08550 749 / 0.0 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1) Potri.016G041900 [exp] 689 / 0 AT3G57200 744 / 0.0 unknown protein Potri.006G045500 [exp] 601 / 0 AT3G57200 646 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039569 [exp] 739 / 0 AT3G08550 781 / 0.0 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1) Lus10024181 [exp] 668 / 0 AT3G08550 684 / 0.0 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1) Lus10018036 [exp] 652 / 0 AT3G57200 705 / 0.0 unknown protein Lus10042032 [exp] 620 / 0 AT3G57200 681 / 0.0 unknown protein Lus10000243 [exp] 253 / 6e-82 AT3G08550 255 / 3e-83 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1) Lus10024182 [exp] 101 / 4e-25 AT3G08550 114 / 2e-30 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G202900.1 pacid=42785378 polypeptide=Potri.003G202900.1.p locus=Potri.003G202900 ID=Potri.003G202900.1.v4.1 annot-version=v4.1 ATGCCGAGCCACCACAACAACCATCTCACCGCTTCCCTCCGCTCCTCCACCACCATCTCCACACAATCCTTTACGTCAAGACTAATCCTCCTCCTGACAC TCCTCCCTCTCTCTCTTGCAGCCTTAGCTTTCATCCTCCAATGGAAAGGGAATTCTGACTTCATGATGGACCCCATAACTGCCAATTCCCGTTGGGCCCC ACAAGGGTCTCACATTCAGAACCATGAGATCTTCCCTGGCATGGAGTCGTCAGTTTTATCGCCTAAAGCTCACAAATCATCTGACTGTTCTAGTCTTGGA CGTAGTGGGGCACCTTCTTTTCCTTATTTTCGTGATTGGAAGATTGATTTTCAAGATGATTTGAGGCCTAAGATATGTATCACAACGAGTACTTCAGCTG ATTTAGATCAGATTCTATCATGGATGTTTTATCATAAGGTTATGGGGGTGATGACCTTTTTTCTTTTTGTGGAAGGGAAGGCCGCGTCTCCTAAGGTGTC TAATGTTTTGGAATCAATTCCTGGAGTAAAATTGATTTATAGAACAAAAGAGCTCGAGGAGCAACAGGCTAAAAGTCGGATATGGAATGAGACATGGCTG TCCAATTTCTTTTACAAACCATGCAACTATGAGCTTTTTGTGAAGCAGTCTCTCAACATGGAAATGGCAATTGTCATGGCAAGGGATGCAGGCATGGATT GGATACTTCATCTTGACACTGATGAACTGATTCACCCTGCTGGTGCCCGTGAATATTCTTTGAGGCAGTTGCTGCTTGATGTTCCTGGAAATGTGGATAT GGTCGTATTTCCAAATTATGAGAGCAGTGTTGAACGAGATGATATTGAGGATCCTTTCGGCGAGGTGTCGATGTTCAAGAGGAATTATGACCATCTCCCA AAGGATACGTACTTTGGAATGTACAAGGAATCTACTCGTGGCAATCAAAATTATTTCTTAACTTATGGAAATGGGAAATCAGCTGCTCGAGTTCAAGATC ACCTACGTCCTAATGGCGCGCACAGATGGCACAATTATATGAAAACCCCAAATGAGGTGAAATTTGAAGAGGCTGCTGTTCTACATTACACGTATTCCAA ATTTTCTGATTTGACTTCTAGACGTGATCGGTGTGGCTGCAAGCCTACTAAGGAGGATGTCAAAAGATGCTTTATGTTGGATTTTGACAGATCTGCCTTC ATAATTGCATCAACTGCAACCGAGGAGGAAATGCTGAACTGGTACCGTGAACATGTCGTATGGGGTGACAAAGACTTGAAATTGAAACTCCTGAGGAAGG GCATTTTAACTCGCATATATTCTCCCATGGTCATAATTCAGGGCTTAAGGGAGTCAGGCGTCTTCAGCTCTGTTATTGAATCCGCTCCAACAACACTTTC AAGGGACAGGTTTTTAGCATCAGTGGATAGTAGTAACTCATCAAGAGCAGTTGTCTCCGAATCAATGCTTTCAAGAAAGACCAACAAAAGCAGAGAGAAT CAGGCAACAGCTAGGAAGGTTTTGGGTTTAGAAACTGCTGCAGCATCTCATGAAGCTGCTGTTCCACCACTTTCTCCTCCAGGGTTGCTTGTGGAAGCAT GA
AA sequence Show only first row Show all	>Potri.003G202900.1 pacid=42785378 polypeptide=Potri.003G202900.1.p locus=Potri.003G202900 ID=Potri.003G202900.1.v4.1 annot-version=v4.1 MPSHHNNHLTASLRSSTTISTQSFTSRLILLLTLLPLSLAALAFILQWKGNSDFMMDPITANSRWAPQGSHIQNHEIFPGMESSVLSPKAHKSSDCSSLG RSGAPSFPYFRDWKIDFQDDLRPKICITTSTSADLDQILSWMFYHKVMGVMTFFLFVEGKAASPKVSNVLESIPGVKLIYRTKELEEQQAKSRIWNETWL SNFFYKPCNYELFVKQSLNMEMAIVMARDAGMDWILHLDTDELIHPAGAREYSLRQLLLDVPGNVDMVVFPNYESSVERDDIEDPFGEVSMFKRNYDHLP KDTYFGMYKESTRGNQNYFLTYGNGKSAARVQDHLRPNGAHRWHNYMKTPNEVKFEEAAVLHYTYSKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRSAF IIASTATEEEMLNWYREHVVWGDKDLKLKLLRKGILTRIYSPMVIIQGLRESGVFSSVIESAPTTLSRDRFLASVDSSNSSRAVVSESMLSRKTNKSREN QATARKVLGLETAAASHEAAVPPLSPPGLLVEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Potri.003G202900 [exp]	0	1	Pt-ABI8.1
AT3G10700		GalAK	galacturonic acid kinase (.1)		Potri.006G070500 [exp]	8.48	0.9178
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Potri.001G080400 [exp]	12.96	0.8978
AT4G19185			nodulin MtN21 /EamA-like trans...		Potri.004G237100 [exp]	18.70	0.8839	N21L2
AT5G37310			Endomembrane protein 70 protei...		Potri.004G075450 [exp]	19.44	0.9052
AT5G01010			unknown protein		Potri.016G143700 [exp]	22.44	0.8929
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Potri.010G207200 [exp]	25.21	0.9000	UXS1.1
AT2G21410		VHA-A2	vacuolar proton ATPase A2 (.1)		Potri.002G028600 [exp]	26.26	0.8957
AT5G14550			Core-2/I-branching beta-1,6-N-...		Potri.001G348400 [exp]	28.10	0.8935
AT3G25290			Auxin-responsive family protei...		Potri.002G249300 [exp]	28.63	0.8285
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Potri.008G187600 [exp]	29.46	0.8948

Compare expression of checked genes

Potri.003G202900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.