Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20740 964 / 0 EMB3131 EMBRYO DEFECTIVE 3131, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G64320 193 / 3e-52 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 182 / 3e-48 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12700 181 / 4e-48 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT2G02150 181 / 5e-48 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G41170 177 / 5e-48 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G09900 179 / 6e-48 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G59900 181 / 1e-47 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G30290 179 / 4e-47 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G06710 180 / 6e-47 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G217600 [exp] 211 / 4e-58 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G236800 [exp] 198 / 3e-53 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G271200 [exp] 193 / 6e-53 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G098400 [exp] 193 / 6e-52 AT2G02150 924 / 0.0 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G074500 [exp] 189 / 1e-51 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G242200 [exp] 189 / 2e-51 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G013300 [exp] 191 / 4e-51 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G271400 [exp] 184 / 6e-50 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G242500 [exp] 184 / 9e-50 AT1G62930 473 / 1e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016361 [exp] 1065 / 0 AT4G20740 914 / 0.0 EMBRYO DEFECTIVE 3131, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10019764 [exp] 660 / 0 AT4G20740 590 / 0.0 EMBRYO DEFECTIVE 3131, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10019765 [exp] 384 / 3e-129 AT4G20740 308 / 2e-100 EMBRYO DEFECTIVE 3131, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10036090 [exp] 200 / 5e-54 AT1G52620 755 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010410 [exp] 197 / 1e-52 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 192 / 2e-51 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 189 / 1e-50 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 189 / 3e-50 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 189 / 3e-50 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026791 [exp] 188 / 5e-50 AT1G52620 741 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.003G203100.1 pacid=42786073 polypeptide=Potri.003G203100.1.p locus=Potri.003G203100 ID=Potri.003G203100.1.v4.1 annot-version=v4.1 ATGCCACCCCAACCGCCACCTCCGCCACCGTCAAAACCCCTTAAACCCTACTTCTTCTACGGCCACCGTAAACCCTCACAAAACCGCCCTGTAGTCCGCG GTGGCCTCTTCACAAACCGTCAAACCGTCAAACCACAACCTCCAAAAAACCCCATCACCCCTTTCAAGCCATTCGATCTCCACAAATGGGACCCACAGCA AAACCTTCCCCACCAGCCACAACCTTCCAAACCTCAATCTCCACGATCACGACACTCCCTCGCCCTCTCCCAACGCCTCTCCCCCATTGCCAGATTCATC CTCGACGCATTCCGCAAGAACCGGAACCAGTGGGGCCCAGAAGTGGTGACAGAGCTCTGCAAACTCCGGAGGGTGACACCGGACCTGGTTGCCGAAGTAC TGAAGGTCGAAAACAACCCTCAGTTAGCGACAAAGTTCTTTCACTGGGCAGGTAAACAGAAAGGGTTTAAGCATACTTTTGCTAGTTATAATGCTTTTGC TTATAATTTGAACAGGAGCAATTTTTTTAGAGCTGCTGATCAGTTGCCTGAATTAATGGAAGCACAAGGGAAGCCACCGACGGAAAAACAGTTTGAAATT TTGATTAGAATGCATTCGGATGCGAATAGGGGACTTAGAGTTTACTATGTGTATCAAAAGATGGTGAAATTTGGGGTTAAACCGCGTGTTTTTTTGTATA ATAGGATAATGGATTCATTGATTAAGACGGGGCATTTGGATTTGGCATTATCGGTTTATGAGGATTTTAGGAGGGATGGACTGGTGGAAGAGAGTGTTAC TTATATGATTTTGATAAAAGGGTTGTGTAAGGCAGGGAGGATAGAGGAAATGATGGAGGTTTTAGGGAGAATGAGGGAGAATTTGTGCAAACCGGATGTT TTTGCATATACAGCAATGGTTAGAGCGTTGGCAGGAGAAGGGAATTTGGATGCTTGTTTGAGGGTTTGGGAGGAGATGAAGAGGGATGGGGTGGAGCCGG ATGTGATGGCATATGTGACTTTGGTTACGGCGTTGTGTAAAGGAGGGAGGGTGGATAAAGGGTATGAGGTGTTTAAGGAGATGAAGGGGAGGAGGATATT GATCGATAGAGGAATTTATGGGATTTTGGTTGAGGCATTCGTGGCGGATGGAAAGATTGGGTTGGCTTGTGATTTATTGAAGGATTTAGTGGATTCAGGG TATAGGGCTGATCTGCGAATTTATAATTCACTTATTGAAGGTTTTTGTAATGTTAAGAGGGTTGATAAGGCTCATAAGCTTTTTCAGGTTACAGTTCAGG AGGGTCTTGAACGGGATTTTAAGACTGTGAATCCTTTGCTGATGTCTTATGCGGAGATGAAAAAGATGGATGATTTTTGCAAGCTTCTTAAGCAAATGGA GAAGTTGGGATTTTCTGTCTTTGATGATCTCTCCAAATTCTTCTCGTATGTGGTTGGGAAGCCAGAAAGAACTATGATGGCCTTGGAAGTGTTTGAAGAC TTGAAAGTAAAAGGTTATAGTAGTGTGCCTATCTACAATATACTTATGGAGGCTCTCCTTACGATTGGAGAGATGAAAAGGGCATTATCACTTTTTGGTG AAATGAAGGACTTAAATAAACCCGACTCAACAACTTATAGCATTGCAATTATATGTTTTGTAGAAGATGGAAACATCCAAGAGGCTTGTGTTAGTCATAA CAAAATAGTTGAGATGTTCTGTGTCCCTTCTGTTGCTGCCTATTGCTCTCTTGCTAAAGGGCTTTGTGATAATGGAGAGATTGATGCAGCTATGATGCTT GTTCGTGACTGCTTAGCCAGTGTTGAAAGTGGGCCCATGGAGTTCAAGTACAGTCTCACGATTCTTCATGCATGTAAAACAGGTGGTGCTGAAAAGGTGA TTGATGTGCTAAATGAGATGATGCAGGAGGGTTGTACTCCCAATGAAGTTATATATTCTGCTATCATCTCTGGTATGTGCAAGCATGGGACATTTGAAGA GGCAAGAAAGGTGTTTACAGATTTGAGACAGCGTAAAATTTTGACTGAAGCAAAGACAATTGTGTTTGATGAAATATTAATTGAACACATGAAGAAGAAG ACAGCTGACTTGGTATTGGCAGGACTAAAGTTCTTTGGTCTAGAGTCAAAGTTGAAAGCAATGGGTAGCACGCTTCTGGGAAGCTGA
AA sequence Show only first row Show all	>Potri.003G203100.1 pacid=42786073 polypeptide=Potri.003G203100.1.p locus=Potri.003G203100 ID=Potri.003G203100.1.v4.1 annot-version=v4.1 MPPQPPPPPPSKPLKPYFFYGHRKPSQNRPVVRGGLFTNRQTVKPQPPKNPITPFKPFDLHKWDPQQNLPHQPQPSKPQSPRSRHSLALSQRLSPIARFI LDAFRKNRNQWGPEVVTELCKLRRVTPDLVAEVLKVENNPQLATKFFHWAGKQKGFKHTFASYNAFAYNLNRSNFFRAADQLPELMEAQGKPPTEKQFEI LIRMHSDANRGLRVYYVYQKMVKFGVKPRVFLYNRIMDSLIKTGHLDLALSVYEDFRRDGLVEESVTYMILIKGLCKAGRIEEMMEVLGRMRENLCKPDV FAYTAMVRALAGEGNLDACLRVWEEMKRDGVEPDVMAYVTLVTALCKGGRVDKGYEVFKEMKGRRILIDRGIYGILVEAFVADGKIGLACDLLKDLVDSG YRADLRIYNSLIEGFCNVKRVDKAHKLFQVTVQEGLERDFKTVNPLLMSYAEMKKMDDFCKLLKQMEKLGFSVFDDLSKFFSYVVGKPERTMMALEVFED LKVKGYSSVPIYNILMEALLTIGEMKRALSLFGEMKDLNKPDSTTYSIAIICFVEDGNIQEACVSHNKIVEMFCVPSVAAYCSLAKGLCDNGEIDAAMML VRDCLASVESGPMEFKYSLTILHACKTGGAEKVIDVLNEMMQEGCTPNEVIYSAIISGMCKHGTFEEARKVFTDLRQRKILTEAKTIVFDEILIEHMKKK TADLVLAGLKFFGLESKLKAMGSTLLGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20740		EMB3131	EMBRYO DEFECTIVE 3131, Pentatr...		Potri.003G203100 [exp]	0	1
AT5G51410			LUC7 N_terminus domain-contain...		Potri.003G109000 [exp]	1.00	0.8834
AT3G23900			RNA recognition motif (RRM)-co...		Potri.017G058300 [exp]	1.41	0.8544
AT5G22320			Leucine-rich repeat (LRR) fami...		Potri.004G199200 [exp]	3.00	0.8329
AT1G60200			splicing factor PWI domain-con...		Potri.010G094700 [exp]	4.00	0.8400
AT3G23900			RNA recognition motif (RRM)-co...		Potri.001G319000 [exp]	4.58	0.8438
AT1G04300			TRAF-like superfamily protein ...		Potri.008G163300 [exp]	6.32	0.8378
AT5G55100			SWAP (Suppressor-of-White-APri...		Potri.001G356800 [exp]	7.34	0.8374
AT3G04380		SDG31, SUVR4	SET DOMAIN PROTEIN 31, SET-dom...		Potri.013G048100 [exp]	8.71	0.8148
AT3G22430			unknown protein		Potri.010G235700 [exp]	9.38	0.8062
AT2G15900			Phox-associated domain;Phox-li...		Potri.004G146600 [exp]	9.48	0.8224

Compare expression of checked genes

Potri.003G203100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.