Plant FIBer expression Database

Potri.003G203300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G022500
[exp]
48 / 4e-08 AT4G31560 67 / 6e-15 high chlorophyll fluorescence 153 (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.003G203300.2 pacid=42784727 polypeptide=Potri.003G203300.2.p locus=Potri.003G203300 ID=Potri.003G203300.2.v4.1 annot-version=v4.1
ATGGTGACACCTGCAGGGTTAAGCTCCAACAGCTACGTGTTGGCATTCCTGCTCCATCTCTCTCTCTTTTCTGCCACTATCTTTTCTTCTATTAGAATTG
CTGATATGCTTGACCAAGACTATCTTGAAGAGGAATCAGAAGAAGTGGATGATGACAAGGAAGAAGACGATGAGGATGACCACGAGAAAGATGATACTGT
TGACATTTCTTTAGAGAAGGAATTGCAGACAGTGCTTCCATGTACAAGAACTTGCAACCGGCCTAAGCGAAAGCCTAGGCTTCATCATCCATGCTTTGCA
TGA
AA sequence
>Potri.003G203300.2 pacid=42784727 polypeptide=Potri.003G203300.2.p locus=Potri.003G203300 ID=Potri.003G203300.2.v4.1 annot-version=v4.1
MVTPAGLSSNSYVLAFLLHLSLFSATIFSSIRIADMLDQDYLEEESEEVDDDKEEDDEDDHEKDDTVDISLEKELQTVLPCTRTCNRPKRKPRLHHPCFA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G31560 HCF153 high chlorophyll fluorescence ... Potri.003G203300
[exp]
0 1
AT4G39120 HISN7, IMPL2 HISTIDINE BIOSYNTHESIS 7, myo-... Potri.009G120600
[exp]
9.79 0.8942
AT3G02300 Regulator of chromosome conden... Potri.017G099900
[exp]
15.77 0.9110
AT3G60220 ATL4 TOXICOS EN LEVADURA 4 (.1) Potri.002G140600
[exp]
19.74 0.8601
AT4G24250 ATMLO13, MLO13 MILDEW RESISTANCE LOCUS O 13, ... Potri.003G151750
[exp]
24.73 0.8208
AT4G35030 Protein kinase superfamily pro... Potri.009G140300
[exp]
33.04 0.8835
Potri.003G081133
[exp]
37.62 0.8836
AT3G55700 UDP-Glycosyltransferase superf... Potri.010G195600
[exp]
46.04 0.7914
AT1G14930 Polyketide cyclase/dehydrase a... Potri.008G131300
[exp]
47.05 0.8803
AT3G63310 BIL4 BRZ-INSENSITIVE-LONG HYPOCOTYL... Potri.005G213900
[exp]
48.06 0.8784
AT3G53830 Regulator of chromosome conden... Potri.016G101700
[exp]
57.82 0.7931

Potri.003G203300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.