Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07690 769 / 0 6-phosphogluconate dehydrogenase family protein (.1) AT2G41540 765 / 0 GPDHC1 6-phosphogluconate dehydrogenase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G046900 [exp] 788 / 0 AT2G41540 820 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2.3) Potri.016G043400 [exp] 782 / 0 AT2G41540 815 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2.3) Potri.017G070900 [exp] 64 / 8e-11 AT5G40610 613 / 0.0 NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016364 [exp] 823 / 0 AT3G07690 766 / 0.0 6-phosphogluconate dehydrogenase family protein (.1) Lus10019761 [exp] 805 / 0 AT3G07690 744 / 0.0 6-phosphogluconate dehydrogenase family protein (.1) Lus10031052 [exp] 789 / 0 AT2G41540 803 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2.3) Lus10035438 [exp] 788 / 0 AT2G41540 800 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2.3) Lus10022308 [exp] 65 / 4e-11 AT5G40610 607 / 0.0 NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1) Lus10014889 [exp] 62 / 4e-10 AT5G40610 609 / 0.0 NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01210 [poplar] [flax] NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CL0106 [poplar] [flax] 6PGD_C PF07479 [poplar] [flax] NAD_Gly3P_dh_C NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
Representative CDS sequence Show only first row Show all	>Potri.003G203800.1 pacid=42786033 polypeptide=Potri.003G203800.1.p locus=Potri.003G203800 ID=Potri.003G203800.1.v4.1 annot-version=v4.1 ATGGTTGAAAATACAGAAGAAATGAATCACACTGTGTATTCAAATGGGTCAATTCAGAACCTGAATGGGGTTTTAGAAGAGAAGCTTGATGAGCTTCGGG CTCTGATAGGCAAAGCAGAAGGTGATCCGTTGAGGATTGTTGGCATTGGGGCAGGTGCTTGGGGCAGTGTGTTTACTGCTTTATTGCAAGATAGTTATGG TCATCTAAGAGATAAGGTACTAATAAGGATATGGAGAAGGCCTGGTAGATCGGTTGATAGGTCCACAGCTGAGCATTTATTTGAAGTGATTAATTCAAGG GAAGATGTGTTAAGGAGATTGATTAGGCGTTGTGCTTATTTAAAGTATGTTGAGGCAAGATTAGGTGATAGGATTTTACATGCAGATGAGCTTTTGAAAG ATGGATTTTGCGTGAATATGATAGACACCCCACTTTGCCCATTGAAGGTTGTGACCAATTTACAGGAGGCTGTGTGGGATGCTGACATTGTTATTAATGG ATTGCCATCAACTGAAACCCATGAAGTATTTGAGGAAATTAGTAGGTATTGGAAGGAGAGGATTACAGTGCCTATTATCATCTCTTTGGCAAAAGGTGTA GAGGCTGAGTTGGAGCCCGAGCCACGCATAATAACCCCCACCCAAATGATCAACCGTGCAACTGGAGTTCCAATGGAAAACATTCTCTATCTTGGAGGAC CAAATATTGCCTCAGAGATTTACAATAAGGAATATGCCAATGCTCGGATTTGTGGAGCAGAAAAGTGGAGGAAACCATTGGCAAAATTTTTGAGGCAGCC AAACTTTATAGTGTGGGATAATGGTGATCTCTTTACTCATGAAGTCATGGGTGGTCTAAAGAATGTCTATGCTATTGGAGCTGGAATGGTAGCAGCTCTA ACCAATGAGAGTGCAACCAGTAAATCAGTGTACTTTGCACACTGTACATCAGAGATGATATTTATTACACATATGTTGGCAGAAAAACCTGAAAAACTTG CTGGCCCCTTGTTAGCTGACACTTATGTAACCTTACTGAAAGGTCGTAATGCATGGTATGGTCAAAAGTTGGCCAAAGGAGAGCTGAGTCTTGAAATGGG GGACAGCATCAAGGGCAAAGGAATGATTCAGGGTGTTTCTGCAGTGAAAGCATTTTACGAGCTGCTAAGTCAGTCTGCCTTAAGCGTCCTGCATCCTGAA GAAAACACACCTGTAGCTCCAGTTGAGCTATGCCCCATATTGAAGATGCTATATGGAATACTTATAACAAGGGAGTTTACAGTGCCGGCCATTCTTCAAG CATTAAGGGATGAAACAATGAACGACCCAAGAGATCGCATCGAGATTGCCCAAACCCGCGTTTACTATAGACCATCACTCCTTGGTCAGAATCCTTGA
AA sequence Show only first row Show all	>Potri.003G203800.1 pacid=42786033 polypeptide=Potri.003G203800.1.p locus=Potri.003G203800 ID=Potri.003G203800.1.v4.1 annot-version=v4.1 MVENTEEMNHTVYSNGSIQNLNGVLEEKLDELRALIGKAEGDPLRIVGIGAGAWGSVFTALLQDSYGHLRDKVLIRIWRRPGRSVDRSTAEHLFEVINSR EDVLRRLIRRCAYLKYVEARLGDRILHADELLKDGFCVNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETHEVFEEISRYWKERITVPIIISLAKGV EAELEPEPRIITPTQMINRATGVPMENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRQPNFIVWDNGDLFTHEVMGGLKNVYAIGAGMVAAL TNESATSKSVYFAHCTSEMIFITHMLAEKPEKLAGPLLADTYVTLLKGRNAWYGQKLAKGELSLEMGDSIKGKGMIQGVSAVKAFYELLSQSALSVLHPE ENTPVAPVELCPILKMLYGILITREFTVPAILQALRDETMNDPRDRIEIAQTRVYYRPSLLGQNP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07690			6-phosphogluconate dehydrogena...		Potri.003G203800 [exp]	0	1
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G025800 [exp]	10.34	0.7695
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Potri.001G225400 [exp]	14.76	0.7663
AT2G38740			Haloacid dehalogenase-like hyd...		Potri.001G147400 [exp]	17.88	0.7322
AT1G14780			MAC/Perforin domain-containing...		Potri.010G104600 [exp]	18.00	0.7374
AT4G11790			Pleckstrin homology (PH) domai...		Potri.003G120900 [exp]	22.75	0.6961
AT3G54130			Josephin family protein (.1)		Potri.006G095700 [exp]	25.03	0.7104
AT1G68710			ATPase E1-E2 type family prote...		Potri.010G132700 [exp]	28.08	0.7460
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.003G211700 [exp]	28.24	0.7276
AT1G80680		NUP96, SAR3, MO...	PRECOCIOUS, MODIFIER OF SNC1,3...		Potri.003G180100 [exp]	28.84	0.7228	PRE.1
AT1G44130			Eukaryotic aspartyl protease f...		Potri.005G179900 [exp]	30.98	0.6875

Compare expression of checked genes

Potri.003G203800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.