Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41560 1395 / 0 ACA4 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) AT3G57330 1380 / 0 ACA11 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) AT4G37640 1204 / 0 ACA2 calcium ATPase 2 (.1) AT1G27770 1202 / 0 PEA1, ACA1 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) AT2G22950 1192 / 0 ACA7 auto-regulated Ca2+-ATPase 7, Cation transporter/ E1-E2 ATPase family protein (.1) AT4G29900 864 / 0 CIF1, ATACA10, ACA10 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) AT5G57110 862 / 0 AT-ACA8, ACA8 "AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8", "autoinhibited Ca2+ -ATPase, isoform 8", autoinhibited Ca2+ -ATPase, isoform 8 (.1), autoinhibited Ca2+ -ATPase, isoform 8 (.2) AT3G21180 844 / 0 ATACA9, ACA9 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) AT3G63380 744 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G22910 738 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G020600 [exp] 1872 / 0 AT2G41560 1455 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.016G043100 [exp] 1447 / 0 AT2G41560 1538 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.006G046500 [exp] 1442 / 0 AT3G57330 1451 / 0.0 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) Potri.007G055500 [exp] 1201 / 0 AT4G37640 1721 / 0.0 calcium ATPase 2 (.1) Potri.014G016600 [exp] 1180 / 0 AT1G27770 1686 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) Potri.006G072900 [exp] 874 / 0 AT4G29900 1549 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Potri.018G139800 [exp] 867 / 0 AT4G29900 1566 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Potri.010G250800 [exp] 852 / 0 AT3G21180 1575 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) Potri.008G008100 [exp] 843 / 0 AT3G21180 1562 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016366 [exp] 1603 / 0 AT2G41560 1463 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10042040 [exp] 1435 / 0 AT3G57330 1542 / 0.0 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) Lus10035439 [exp] 1433 / 0 AT2G41560 1535 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10031053 [exp] 1372 / 0 AT2G41560 1480 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10018687 [exp] 1202 / 0 AT1G27770 1667 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) Lus10011522 [exp] 1179 / 0 AT4G37640 1704 / 0.0 calcium ATPase 2 (.1) Lus10019300 [exp] 1110 / 0 AT4G37640 1628 / 0.0 calcium ATPase 2 (.1) Lus10025199 [exp] 1106 / 0 AT4G37640 1591 / 0.0 calcium ATPase 2 (.1) Lus10019758 [exp] 1093 / 0 AT2G41560 1007 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10001638 [exp] 869 / 0 AT4G29900 1599 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase PF00689 [poplar] [flax] Cation_ATPase_C Cation transporting ATPase, C-terminus PF00690 [poplar] [flax] Cation_ATPase_N Cation transporter/ATPase, N-terminus PF12515 [poplar] [flax] CaATP_NAI Ca2+-ATPase N terminal autoinhibitory domain CL0137 [poplar] [flax] HAD PF12710 [poplar] [flax] HAD haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.003G204000.1 pacid=42785511 polypeptide=Potri.003G204000.1.p locus=Potri.003G204000 ID=Potri.003G204000.1.v4.1 annot-version=v4.1 ATGGAGCAATACTTGAAAGAAAACTTTGTAGTTGATGCAAAGAGACCCTCCGAACAAGCTTTAAGAAGATGGAGATCTGCAGTTTCAGTCGTCAGGAATC CTCGCCGGAGGTTTCGAATGGTTGCTGATCTTGCCAAAAGAGCTGAAGCTGAAAGGAAACGTAAAAATCTCCAGGAAAAGATACGGATAGCTCTTTATGT CAACAAGGCAGCATTGCATTTCATCGAGGCTGCTAAAGTAGTTGAGCACAAGCTCTCAGACAATGTCAGGCAAACTGGTTTTGGCATTGGACCGGATGAA CTAGCAGCGCTCGCTCGGTCCCATGATATCAATGACTTGGAATCTCATGGAGGAGTTGAGGGATTGGCCAGAGAAGTATCTGCTTCCTTGAATGATGGGG TTGTCTCGAGTGATATATCTCTTAGGCAAAATATATACGGCTTCAACCGATATGCTGAGAAACCTGCCAGATCTTTTTGGATGTTTGTATGGGATGCTTT GCATGATTTGACGTTAGTTATTCTGATGGTGTGTGCTGTGGTCTCCATTGGTGTTGGTATTGCAACTGACGGTTGGCCGAATGGAATGTATGATGGGGTG GGAATAGTAATATGCATTTTGCTAGTAGTGATGGTCACTGCAATCACTGACTACAAGCAGGCCTTGCAATTCAAGGTCCTGGACAAGGAGAAGAAGAATG TTATTGTTCAGGTTACCAGAGAAGGGATCAGACAGAAGGTTTCTATCTTCGATTTGGTGGTTGGAGATGTTGTTCATCTATCAATTGGAGATCTGGTTCC TGCAGATGGCATTCTTATATCAGGCCACAGCTTATCAGTTGATGAATCCAGCTTGTCAGGAGAGAGTGAGCTAGTGGACATAAATAAAAAGAGGCCCTTT CTTCTATCAGGTACCAAAATACAGGATGGGTCTGGTAAAATGCTGGTGACAGCAGTCGGTATGAGGACTGAATGGGGTACGTTGATGGTTCATCTGAGCG AAGTGGATCAAGATGAGACACCATTACAGGTGAAGCTTAATGGAGTTGCAACTATTATTGGGAAAATTGGTTTGGCTTTTGCTGTGATAACTTTTTTGGT TCTGCTGGTACGGTTTCTATTGGTGAAGGCAGACCACCATGAGATCACAAAATGGTCTAGTAGTGATGCTTTGAAGCTTCTAAATTTCTTTTCGATTTCT GTAACCATAATTGTTGTTGCAGTTCCTGAAGGGCTTCCATTAGCAGTGACACTTAGTCTTGCATTTGCAATGAAGAAACTAATGCACGATAGAGCACTGG TGAGGCATCTTTCCGCATGTGAAACAATGGGTTCTGTTTGTTGCATTTGCACAGATAAAACTGGAACATTGACTACAAATCATATGGTGGTGAACAAAAT ATGGATCTGTGAAGAAACAAAATCAATACAAACTAATAGCAATAAAGATTTATTAATGTCCTCTTTCTCAGAAAATGTGCATGGAATCCTTTTGCAATCT ATATTTCAGAACACAGGATCAGAGGTAACCAAGGGAAAAGATGGAAGGGATAACATTTTGGGGACGCCGACGGAGACAGCAATATTAGAGTTTGGATTAA TTTTAGGAGGCGAGTTTAAAACATATCATAACGAATCTGAGATAGTGAAAGTTGAGCCTTTCAACTCAGAAAAGAAGAAGATGTCTGTGCTTGTTTCTCT TCCTAACAACGGTGGGTTTCGAGCATTCTGCAAAGGTGCATCAGAAATAATTTTGAAAATGTGTGACAAGATGTTAACTGCTGATGGAAAAGCTGTGCCG CTATCTGAAAAGCAAAGACAGAAAATCACAGATGTCATAAATGGTTTTGCCTGTGAAGCTCTACGAACTCTATGCTTGGCTTTCAAGGATATGGAGAATA CTTCTGGTGCAAATAGCATGCCTGACAATAACTATACATTAATCGCTGTCGTTGGAATTAAGGATCCTATACGCCCTGAGGTGAAGGAAGCTGTTAAGAC TTGTTTAGATGCTGGAATTACTGTGCGTATGGTCACTGGTGACAATATCAACACTGCAAAAGCCATAGCTAGGGAATGTGGCATCTTGACAGATTATGGC CTGGTAATTGAAGGGGCAGATTTCCGTTGTAAGAGTCCTCAGGAGTTGGAGGAGATAATACCAAATCTTCAGGTTATGGCCCGATCATCACCTTCGGACA AGCATAAATTGGTGACTCAATTGAGGAGTGTATTTAAGGAAGTTGTGGCAGTGACTGGAGATGGTACTAATGATGCTCCAGCCTTGGCCGAGGCAGATAT CGGACTTGCTATGGGCATAGCAGGAACAGAGGTTGCAAAAGAAAGTGCTGATGTTATTGTAATGGATGACAACTTTAAAACTATAGTGAATGTTGCAAGA TGGGGTCGATCAGTTTATATTAACATTCAGAAGTTTGTTCAGTTCCAGTTAACAGTCAATGTTGCTGCTCTCATGATAAATTTCATTTCTGCGTGCATCT CTGGCGATGAGCCATTGACCACTGTTCAGCTGCTTTGGGTGAACTTGATCATGGACACTCTTGGTGCGTTGGCATTGGCTACAGAACCTCCTCATGATGG ACTGATGAAAAGACCTCCAATTGGTAGGAATGTAAACATAATCACCAAGACAATGTGGAGGAATATCATTGGACAAAGCATCTATCAAATAAGTGTCCTT GTCATCCTCCAGCTTGATGGGAAACATCTACTGAAGCTTTCTGATTCAGATGATACTAAAATCCTGAATACTTTCATATTTAATACCTTTGTGCTTTGCC AGGTGTTCAATGAAATAAACAGCCGAGATATGGAGAAGATAAATGTGTTCAAAGGCATCTTTAGTAGCTGGATTTTCTTGGCTGTCATGTTCTCCACAGT TACTTTCCAGATTGTAATAGTTGAATTCTTGGGCACATATGCTAATACTGTGCCACTAAGGTGGGAATTATGGTTGGCCAGTGTCTTAATCGGAGCTGCA AGTTTAGTCATTTCTGTCATCCTGAAGTGCATTCCTGTTGGAACAAACAAAGATGACAACACTGCCAAGCATCACGACGGTTATGAGCCTCTTCCTAGTG GTCCAGATATGGCCTGA
AA sequence Show only first row Show all	>Potri.003G204000.1 pacid=42785511 polypeptide=Potri.003G204000.1.p locus=Potri.003G204000 ID=Potri.003G204000.1.v4.1 annot-version=v4.1 MEQYLKENFVVDAKRPSEQALRRWRSAVSVVRNPRRRFRMVADLAKRAEAERKRKNLQEKIRIALYVNKAALHFIEAAKVVEHKLSDNVRQTGFGIGPDE LAALARSHDINDLESHGGVEGLAREVSASLNDGVVSSDISLRQNIYGFNRYAEKPARSFWMFVWDALHDLTLVILMVCAVVSIGVGIATDGWPNGMYDGV GIVICILLVVMVTAITDYKQALQFKVLDKEKKNVIVQVTREGIRQKVSIFDLVVGDVVHLSIGDLVPADGILISGHSLSVDESSLSGESELVDINKKRPF LLSGTKIQDGSGKMLVTAVGMRTEWGTLMVHLSEVDQDETPLQVKLNGVATIIGKIGLAFAVITFLVLLVRFLLVKADHHEITKWSSSDALKLLNFFSIS VTIIVVAVPEGLPLAVTLSLAFAMKKLMHDRALVRHLSACETMGSVCCICTDKTGTLTTNHMVVNKIWICEETKSIQTNSNKDLLMSSFSENVHGILLQS IFQNTGSEVTKGKDGRDNILGTPTETAILEFGLILGGEFKTYHNESEIVKVEPFNSEKKKMSVLVSLPNNGGFRAFCKGASEIILKMCDKMLTADGKAVP LSEKQRQKITDVINGFACEALRTLCLAFKDMENTSGANSMPDNNYTLIAVVGIKDPIRPEVKEAVKTCLDAGITVRMVTGDNINTAKAIARECGILTDYG LVIEGADFRCKSPQELEEIIPNLQVMARSSPSDKHKLVTQLRSVFKEVVAVTGDGTNDAPALAEADIGLAMGIAGTEVAKESADVIVMDDNFKTIVNVAR WGRSVYINIQKFVQFQLTVNVAALMINFISACISGDEPLTTVQLLWVNLIMDTLGALALATEPPHDGLMKRPPIGRNVNIITKTMWRNIIGQSIYQISVL VILQLDGKHLLKLSDSDDTKILNTFIFNTFVLCQVFNEINSRDMEKINVFKGIFSSWIFLAVMFSTVTFQIVIVEFLGTYANTVPLRWELWLASVLIGAA SLVISVILKCIPVGTNKDDNTAKHHDGYEPLPSGPDMA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41560		ACA4	"autoinhibited Ca\(2+\)-ATPase...		Potri.003G204000 [exp]	0	1
AT2G25410			RING/U-box superfamily protein...		Potri.003G080200 [exp]	1.41	0.9690
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Potri.018G145512 [exp]	4.24	0.9633
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Potri.017G141400 [exp]	5.83	0.9391
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Potri.004G101400 [exp]	6.48	0.9413
AT1G74170		AtRLP13	receptor like protein 13 (.1)		Potri.018G144800 [exp]	6.63	0.9611
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.001G063909 [exp]	7.74	0.9589
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073491 [exp]	8.24	0.9192
AT4G27290			S-locus lectin protein kinase ...		Potri.011G129350 [exp]	8.36	0.9512
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.001G063900 [exp]	9.38	0.9582
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.018G145516 [exp]	10.19	0.9434

Compare expression of checked genes

Potri.003G204000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.