Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51950 342 / 1e-109 C3HZnF Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) AT5G12440 315 / 7e-98 C3HZnF CCCH-type zinc fingerfamily protein with RNA-binding domain (.1.2.3) AT3G21100 278 / 3e-84 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G63450 227 / 3e-67 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT1G51520 198 / 1e-55 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G05160 155 / 4e-40 C3HZnF CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) AT3G52980 119 / 1e-09 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1) AT1G51530 61 / 1e-09 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G14300 47 / 3e-05 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G17640 44 / 0.0004 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G020300 [exp] 1117 / 0 AT3G51950 330 / 1e-104 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.001G255532 [exp] 486 / 1e-163 AT3G51950 347 / 8e-112 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.009G050700 [exp] 467 / 9e-156 AT3G51950 362 / 4e-117 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.001G255400 [exp] 321 / 1e-99 AT3G21100 338 / 2e-107 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.009G050600 [exp] 318 / 1e-98 AT3G21100 360 / 4e-116 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G221100 [exp] 162 / 2e-42 AT2G05160 469 / 1e-160 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Potri.014G165500 [exp] 149 / 9e-38 AT2G05160 513 / 8e-178 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Potri.001G276300 [exp] 70 / 2e-13 AT5G12440 80 / 3e-17 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1.2.3) Potri.001G196500 [exp] 43 / 0.0006 AT1G17640 274 / 4e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039575 [exp] 580 / 0 AT3G51950 427 / 3e-144 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10005319 [exp] 575 / 0 AT3G51950 420 / 2e-141 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10019044 [exp] 374 / 2e-120 AT3G51950 341 / 4e-110 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10027351 [exp] 247 / 1e-76 AT3G21100 235 / 6e-77 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10014915 [exp] 251 / 2e-74 AT3G21100 384 / 7e-127 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10005023 [exp] 233 / 5e-68 AT3G21100 380 / 4e-125 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10019042 [exp] 229 / 7e-66 AT3G21100 368 / 6e-120 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10009964 [exp] 204 / 4e-59 AT3G51950 215 / 3e-64 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10027350 [exp] 201 / 2e-56 AT3G21100 327 / 4e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10012333 [exp] 175 / 6e-47 AT2G05160 488 / 2e-168 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0537 [poplar] [flax] CCCH_zf PF00642 [poplar] [flax] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Potri.003G204300.3 pacid=42784907 polypeptide=Potri.003G204300.3.p locus=Potri.003G204300 ID=Potri.003G204300.3.v4.1 annot-version=v4.1 ATGGATGCTTATGAAGCAACAAGAATAGTTTTCTCAAGAATCCAAAATCTAGACCCAGAAAATGCTTCAAAGATCATGGGTCTTCTTTTGATTCAAGACC ATGGTGAAAAGGAAATGATTAGGTTAGCTTTTGGACCAGAAGCACTTGTTCACTCAGTGATCCTTAAAGCCAGGAAAGAACTAGGACTAAGCTCTCCGAC AAACCTTTCTACAAGTCCTTCCTCTCCTTCTCATCTTTACTCAAGCAACCCAATAGCCATCTCTAGACAAAATAGTTCTTCAACTTCAAGACTTGGGTTT AATATCCCACCTTCACTTGCTATCCCAAACCCTTCATCAAATAATTCTTCTTCTTGGAGTGACCTTCCAAACCCAGATGACTTGATGATTAGTCCTAATG ATAGCTCACTCAATCCTGCTTCAGTGCCTTTCTATGCTAATGGAGTAAGAGGTGGAGAGTCTGATTTGATGGATGAGTTTCAGCTCCAAGACCAGCTTTC ATTCTTAAATGATAATTCACAAAATCTCGGTCCAAAAAGTTCAGATCTTTTTTACCCTCAACTTGATGCTCTATCAAGTCCAACTGGTGCTAGTGATTCT ATGATGTTTCCTTCTTACTGGGGTGGGTCTGTGCACAGAAGGAGCTGCTCTGTCAGTGATGTTTTGGGGTCTGAGGATCCAAATTCAGGGTTTGGATGGA GACCATGTCTTTACTTTGCTAGAGGGTACTGTAAGAATGGAAGTAATTGTAGGTTTGTTCATGGTGGGCTTGGAGAACTAGATGGTGCAGGTGTTGTCAG TTCACCCAATGGCAACAACAAGATTGATATGATGGACCAGTGCCATGAGTTGCTTAGATCTAAGTCTGCTCACCAGCAAAGGTTAGCTGCTGCTTCTCAG CTCATGAGTGGCTCTGCTGCTTCTTTTCCTTACTCTCCTAAAAGCATGAACTTTCTTCTTCAACAGCAGCAAAATGATAGCCAGAGGGCTGCCGCTACTG CTTTGATGATGGGGGAGGACATGCACAAATTTGGAAGATCTAGGCTTGACAGGAATGATTTGGTTAATCCTGCTTCAAGGCAGATCTACTTGACTTTCCC AGCGGATAGCACTTTTAGAGAGGAAGACGTGTCAAATTATTTCAGTATTTATGGGCCAGTGCAAGATGTGAGGATTCCTTATCAGCAGAAGAGGATGTTT GGATTTGTTACCTTTGTTTATCCAGAGACGGTGAAGATAATCTTGGCCAAAGGGAATCCTCATTTTGTTTGTGATGCAAGGGTGCTTGTTAAGCCATACA AAGAGAAAGGCAAAGTCCCAGACAAGTACAGGAAGCAACAGCAGCAACAAGTTGAGAGGGGTGAGTTCTCACCTTGCGGTACTCCTACTGGTCTTGATTC AAGAGATCCCTTTGATCTCCAGCTTGGTGCAAGAATGTTTTACAATACTCAAGACATGCTGTGGAGGAGGAAGCTAGAGGAGCAAGCTGATTTGCAGCAA GCCCTTGAGCTTCAAAGTAGAAGATTAATGAGCTTGCAGCTTCTTGATGTCAAGAAACATCATCACAGGGCTCTTTCCAATGGCAGCCCTGTCCCCTCTC CTACTCACTCTCCCAATATTTTCAATCACTCTCTTGCCTTCCCTCCACTCCACAGCAGCACCGAAGTTCCACAGGAGAATTGTTCTAGCTCAATGCCAGC CACGTCAGTGACTGCCCCGCCTGAAAAACAGATATCAAATGCTACTTCTGGTAAAGAATATACTAGCAGTGAAGAGAACGGCAGTGGAAAAGAGAGCTCC CATGGTGAAGACAGTGATTTACAAGAAAGTTTGGAGCACAACCTCCCTGACAGTCCCTTTGCATCTCCAACAAAAGGCACCGGGGACTATTACTCTGCCT TCATCAATGGACTTACTGAGGCCCGTGAGAAGGATGCTAGCATCCCAACTTCAACTTCTGCTAACAATAATTTGGTCCCCTCAAGTCTAATCTCTCCTAA TTCTTCACTGGAAATGGCATCCTTCAAATCCTTCAATTGCCAAATCCCTAGGTTTTCATCTGGGCATGGAGCAATTGGGATGTATGCCAGCACAGATGGA CCTACCTGTCCCGTTGGAATTTAG
AA sequence Show only first row Show all	>Potri.003G204300.3 pacid=42784907 polypeptide=Potri.003G204300.3.p locus=Potri.003G204300 ID=Potri.003G204300.3.v4.1 annot-version=v4.1 MDAYEATRIVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGPEALVHSVILKARKELGLSSPTNLSTSPSSPSHLYSSNPIAISRQNSSSTSRLGF NIPPSLAIPNPSSNNSSSWSDLPNPDDLMISPNDSSLNPASVPFYANGVRGGESDLMDEFQLQDQLSFLNDNSQNLGPKSSDLFYPQLDALSSPTGASDS MMFPSYWGGSVHRRSCSVSDVLGSEDPNSGFGWRPCLYFARGYCKNGSNCRFVHGGLGELDGAGVVSSPNGNNKIDMMDQCHELLRSKSAHQQRLAAASQ LMSGSAASFPYSPKSMNFLLQQQQNDSQRAAATALMMGEDMHKFGRSRLDRNDLVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMF GFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKGKVPDKYRKQQQQQVERGEFSPCGTPTGLDSRDPFDLQLGARMFYNTQDMLWRRKLEEQADLQQ ALELQSRRLMSLQLLDVKKHHHRALSNGSPVPSPTHSPNIFNHSLAFPPLHSSTEVPQENCSSSMPATSVTAPPEKQISNATSGKEYTSSEENGSGKESS HGEDSDLQESLEHNLPDSPFASPTKGTGDYYSAFINGLTEAREKDASIPTSTSANNNLVPSSLISPNSSLEMASFKSFNCQIPRFSSGHGAIGMYASTDG PTCPVGI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Potri.003G204300 [exp]	0	1
AT5G66730	C2H2ZnF	IDD1, ENY	INDETERMINATE DOMAIN 1, ENHYDR...		Potri.007G028800 [exp]	2.00	0.8796
AT1G27595			unknown protein		Potri.002G107400 [exp]	7.21	0.8691
AT1G08840		EMB2411	embryo defective 2411, DNA rep...		Potri.014G180200 [exp]	7.34	0.8530
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Potri.001G262600 [exp]	7.34	0.8723
AT2G37160			Transducin/WD40 repeat-like su...		Potri.006G129100 [exp]	8.24	0.8051
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Potri.006G138500 [exp]	8.94	0.8428	Pt-NPH4.2
AT1G15780			unknown protein		Potri.001G204900 [exp]	10.67	0.8704
AT3G18770			Autophagy-related protein 13 (...		Potri.019G010700 [exp]	10.81	0.8466
AT5G20420		CHR42	chromatin remodeling 42 (.1)		Potri.010G183799 [exp]	10.95	0.8504
AT5G50010	bHLH		sequence-specific DNA binding ...		Potri.002G103300 [exp]	11.31	0.8284

Compare expression of checked genes

Potri.003G204300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.