Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16770 151 / 4e-45 bZIP bZIP23 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT4G35040 147 / 2e-43 bZIP bZIP19 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G51960 140 / 4e-41 bZIP ATBZIP24 basic leucine zipper 24 (.1.2) AT1G22070 46 / 1e-05 bZIP TGA3 TGA1A-related gene 3 (.1) AT1G77920 40 / 0.0008 bZIP bZIP transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G020200 [exp] 287 / 2e-98 AT2G16770 120 / 9e-33 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.004G175200 [exp] 160 / 2e-48 AT4G35040 267 / 6e-90 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.009G134900 [exp] 149 / 3e-44 AT4G35040 291 / 2e-99 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.005G231300 [exp] 41 / 0.0002 AT1G75390 172 / 2e-55 basic leucine-zipper 44 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014121 [exp] 154 / 2e-46 AT2G16770 265 / 8e-90 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10027847 [exp] 155 / 4e-46 AT2G16770 295 / 1e-100 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10005073 [exp] 155 / 9e-46 AT4G35040 294 / 2e-99 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10016368 [exp] 122 / 4e-35 AT4G35040 135 / 5e-40 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10019788 [exp] 113 / 1e-30 AT2G16770 209 / 5e-68 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10019756 [exp] 83 / 2e-20 AT4G35040 79 / 4e-19 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10001347 [exp] 40 / 0.0004 AT1G75390 159 / 4e-50 basic leucine-zipper 44 (.1.2) Lus10018662 [exp] 40 / 0.0005 AT3G49760 82 / 2e-20 basic leucine-zipper 5 (.1) Lus10018009 [exp] 41 / 0.0006 AT1G77920 424 / 2e-148 bZIP transcription factor family protein (.1) Lus10006489 [exp] 40 / 0.0009 AT1G45249 297 / 1e-97 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [poplar] [flax] bZIP PF07716 [poplar] [flax] bZIP_2 Basic region leucine zipper
Representative CDS sequence Show only first row Show all	>Potri.003G204400.3 pacid=42786000 polypeptide=Potri.003G204400.3.p locus=Potri.003G204400 ID=Potri.003G204400.3.v4.1 annot-version=v4.1 ATGAAAGATTATAGAATGGATGATGGGGAGGTAGAGCTTTCGGATCATGTTTTGTTACCGGATCCCGGTACTTCTGGAAGTTTGCAGTGTTCTGGGTCTG TGGATTCACTTCTTGATGAATTATTGAAGAATACGAGAACGTGTACTCACACTCACACTTGCAACCCTCATGGCCCCGATGCAATCCATACACATACATG CTACCACACACACACCCAAGTCATTGCTTCTGAAGAAGATGATAACCCAGACAATAGAGAGCATTCAAGAAAAAGGCCAGCAGGAAATAGGGAAGCAGTT CGAAAGTATAGGGAAAAGAAGAAGGCGCATACGGCTTACTTAGAAGAGGAAGTAAAGAAATTGCATTTGTTGAACCAGCAGCTGGTGAGGAAAATACAAC GGCAGGCAATTCTTGAAGCCGAGGTTTCGAGGCTAAGAAGCATTCTGGTGGACCTGAGGGGAAAGATCGACACTGAGTTGGGTGTTTTTCCATTCCAAAA CCATTGCAACACCACCACTGTTTTGAAGGAAGGTGAGTGTGGAGCGCAGTCCACTGGTGGGCTAATGAATCTACAGTGTCAGGCAGATTTAGCATGCTTC CATACCCCTACAATAGTAAATTGTCAAGCTAACACAAATAATACGGCAAATGCTGAAGGGCATGCAATGGACATGGTGGAAGCCTTCCTGCCATCTGCCT CTCAAGCTCATTAA
AA sequence Show only first row Show all	>Potri.003G204400.3 pacid=42786000 polypeptide=Potri.003G204400.3.p locus=Potri.003G204400 ID=Potri.003G204400.3.v4.1 annot-version=v4.1 MKDYRMDDGEVELSDHVLLPDPGTSGSLQCSGSVDSLLDELLKNTRTCTHTHTCNPHGPDAIHTHTCYHTHTQVIASEEDDNPDNREHSRKRPAGNREAV RKYREKKKAHTAYLEEEVKKLHLLNQQLVRKIQRQAILEAEVSRLRSILVDLRGKIDTELGVFPFQNHCNTTTVLKEGECGAQSTGGLMNLQCQADLACF HTPTIVNCQANTNNTANAEGHAMDMVEAFLPSASQAH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G16770	bZIP	bZIP23	Basic-leucine zipper (bZIP) tr...		Potri.003G204400 [exp]	0	1
AT3G51630		ATWNK5, ZIK1, W...	with no lysine (K) kinase 5 (....		Potri.016G134600 [exp]	8.94	0.7636
AT4G17570	GATA	GATA26	GATA transcription factor 26 (...		Potri.003G082800 [exp]	12.00	0.7712
					Potri.001G318600 [exp]	13.41	0.7664
					Potri.007G125700 [exp]	17.14	0.7522
AT2G44600			unknown protein		Potri.002G135400 [exp]	18.33	0.7645
AT3G59670			unknown protein		Potri.007G051100 [exp]	19.07	0.7442
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Potri.009G120800 [exp]	26.94	0.7125
AT2G26170		CYP711A1, MAX1	MORE AXILLARY BRANCHES 1, "cyt...		Potri.018G062100 [exp]	36.49	0.7503	Pt-CYP711.2
AT5G01850			Protein kinase superfamily pro...		Potri.016G134900 [exp]	36.66	0.7444
AT4G17900			PLATZ transcription factor fam...		Potri.019G051200 [exp]	39.97	0.7363

Compare expression of checked genes

Potri.003G204400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.