Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G019795 [exp] 47 / 4e-05 ND / Potri.001G019985 [exp] 46 / 9e-05 ND / Potri.001G019890 [exp] 46 / 0.0001 ND /
Flax homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04554 [poplar] [flax] Extensin_2 Extensin-like region
Representative CDS sequence Show only first row Show all	>Potri.003G204450.1 pacid=42785343 polypeptide=Potri.003G204450.1.p locus=Potri.003G204450 ID=Potri.003G204450.1.v4.1 annot-version=v4.1 ATGGGAAAACAGGGGAAGTCGGGGCATTTGTCCCTAATGATACATGCTATAGCAATTTGCCTTGTAGCCACCAGTGTGGTGGCTTATGAGCCTTATTCCT ATAAATCATCTCCTCCTTTGTTGAAATCTTCTCCCCCATATTATTATAAATCTCCACCACCTCCATCTTCATCACCACCTTCACCAATTCTCTACACATC TCCACCTCCTCCAAAAAAATCCCCTCCACCATCATATCATTACACATCTCCTCCACCACCAAAGAAATCCCCTCATCCACTATACCACTACAAATCTCCT CCACCACCAAAGAAATCCCCTCATCTACCATACTATTACAAGTCTCCTCCTCCACCATCTCCATCACCACCACCTCCATACCACTATACATCTCCACCTC CTCCAAAGAAATCTCCTCCTCCTCCATACCACTACACTTCACCTCCCCCACCAAAGAAATCCCCTCATCCATCATACTATTACAAGTCTCCTCCTCCACC ATCTTCATACCACTACACATCTCCACCTCCTCCAAAGAAATCTCCTCCACCACTATACCATTACACATCTCCTCCACCATCAAAGAAATCCCCTCATCCA CTATACCACTATAAATCTCCTCCACCACCAAAGAAATCCCCTCATCCACCATACTATTACAAGTCTTCTCCTCCACCATCTTCATACCACTACACATCTC CACCTCCTCCAAAGAAATCTCCTCCACCACTATACCATTACTCATCTCCTCCACCATCAAAGAAATCCCCTCATCCACTATACCACTATAAATCTCCTCC ACCACCAAAGAAATCCTCTCATCCACCATACTATTACAAGTCTCCTCCTCCACCATCTTCATCACCACCACCTTCATACCACTACACATCTCCACCTCCT CCAAAGAAATATCCCTCTCCTCCATACCACCACACTTCACCTCCCCCACCAAAGAAATCCCCTCATCCATCATACTATAATTACAGGTCTCCTCCTCCAC CATCTTCATCACCACCACCTTCATACCACTACACATCTCCACATCCTCCAAAGAAATCTCCCCCTCCTACACACCACTACACTTCACCTCCCCCGCCAAA GAAATCTCATCATCCACCACACTATTACAAGTCACCTCCTCCACCATCCCTATCACCACCACCTCCATACCACTACACATCTCCACCTCCTCCAAAGAAA TCTCCTCCTCCTCCATACCACTACGCCTCACCTCCACCACCTAAAAAGTCTCCCCCTCCACCGTACTATTACAAGTCTCCACCTCCACCATCCCCGTCAC CACCACCTCCATACCAATACACATCTCCACCTCCTCCAAAGAAATCCCCTCCTCCTCCATACCACTACGCCTCACCTCCACCACCTAAAAAGTCTCCCCC TCCACTGTACTATTACAAGTCTCCTCCTCCACCATCCCCGTCACCACCACCTCCATACCAATACACATCTCCACCTCCTCCAAAGAAATCCCCTCCTCCT CCATACCACTACACCTCACCTCCACCACCTAAAAAGTCTCCCCCTCCACCGTACTATTACAAGTCTCCACCTCCACCATCCCCGTCACCACCACCTCCAT ACCAATACACATCTCCACCTCCTCCAAAGAAATCCCCTCCTCCTCCATACCACTACGCCTCACCTCCACCACCTAAAAAGTATCCCCCTCCACCGTACTA TTACAAGTCTCCACCTCCACCATCCCCGTCACCACCACCTCCATACCAATACACATCTCCACCTCCTCCAAAGAAATCCCCTCCTCCTCCATACCACTAC ACCTCACCTCCACCACCTAAAAAGTCTCCCCCTCCACCGTACTCTTACAAGTCTCCTCCTCCACCATCCCCGTCACCACCACCTCCATACCAATACACAT CTCCACCTCCTCCAAAGAATTCCCCTCCTCCACCTTACTATTATAAGTCTCCACCTCCACCATCCCCGTCACCACCACCTCCATACCAATACACATCTCC ACCTCCTTCAAAGAAATCCCCTCCTCCTCCATACCACTACGCCTCACCTCCACCACCTAAAAAGTCTCCCCCTCCACCGTACTCTTACAAGTCTCCTCCT CCACCATCCCCGTCACCACCACCTCCATACCAATACACATCTCCACCTCCTCCAAAGAAATCCCCTCCTCCTCCATACCACTACGCCTCACCTCCACCAC CTAAAAAGTCTCCCCCTCCACCGTACTCTTACAAGTCTCCTCCTCCACCATCCCCGTCACCACCACCTCCATACCAATACACATCTCCACCTCCTCCAAA GAAATCCCCTCCTCCTCCATACCACTACGCCTCACCTCCACCACCTAAAAAGTCTCCCCCTCCACCGTACTATTATAAGTCTCCTCCTTCACCATCCCCG TCACCACCACCTCCATACCAATACACATCTCCACCTCCTCCAAAGAAATCCCCTCCTCCTCCATACCACTACGCCTCACCTCCACCACCTAAAAAGGCTC CCCCTCCATCGTACTCTTACAAGTCTCCTCCTCCACCATCCCCGTCACCACCACCTCCATACCAATACACATCTCCACCTCCTCCAAAGAATTCCCCTCC TCCACCTTACTATTATAAGTCTCCACCTCCACCATCTCCCTCACCACCACCTCAATACCACTACACATCTCCTCCACCTCCAAAGAGATCTCCTCCTCCA CCATACCACTACACATCTCCTCCCCCTCCAAAGAAATCTCCCCCTCCACACTATTACAAGTCTCCTCCTCCACCATCTTCATCACCACCACCACCAAACT ATTACACATCACCTCCTCCTTTAGTGAAATCTTCACCCCCTCCATACTACTATACATCTCCACCACCACCATCTTCATCTCCTCCACCACCCTACTACTA TAGATCTCCACCACCCCCAACTCACTCCCCACCTCCTCCACACATTTATGCATAA
AA sequence Show only first row Show all	>Potri.003G204450.1 pacid=42785343 polypeptide=Potri.003G204450.1.p locus=Potri.003G204450 ID=Potri.003G204450.1.v4.1 annot-version=v4.1 MGKQGKSGHLSLMIHAIAICLVATSVVAYEPYSYKSSPPLLKSSPPYYYKSPPPPSSSPPSPILYTSPPPPKKSPPPSYHYTSPPPPKKSPHPLYHYKSP PPPKKSPHLPYYYKSPPPPSPSPPPPYHYTSPPPPKKSPPPPYHYTSPPPPKKSPHPSYYYKSPPPPSSYHYTSPPPPKKSPPPLYHYTSPPPSKKSPHP LYHYKSPPPPKKSPHPPYYYKSSPPPSSYHYTSPPPPKKSPPPLYHYSSPPPSKKSPHPLYHYKSPPPPKKSSHPPYYYKSPPPPSSSPPPSYHYTSPPP PKKYPSPPYHHTSPPPPKKSPHPSYYNYRSPPPPSSSPPPSYHYTSPHPPKKSPPPTHHYTSPPPPKKSHHPPHYYKSPPPPSLSPPPPYHYTSPPPPKK SPPPPYHYASPPPPKKSPPPPYYYKSPPPPSPSPPPPYQYTSPPPPKKSPPPPYHYASPPPPKKSPPPLYYYKSPPPPSPSPPPPYQYTSPPPPKKSPPP PYHYTSPPPPKKSPPPPYYYKSPPPPSPSPPPPYQYTSPPPPKKSPPPPYHYASPPPPKKYPPPPYYYKSPPPPSPSPPPPYQYTSPPPPKKSPPPPYHY TSPPPPKKSPPPPYSYKSPPPPSPSPPPPYQYTSPPPPKNSPPPPYYYKSPPPPSPSPPPPYQYTSPPPSKKSPPPPYHYASPPPPKKSPPPPYSYKSPP PPSPSPPPPYQYTSPPPPKKSPPPPYHYASPPPPKKSPPPPYSYKSPPPPSPSPPPPYQYTSPPPPKKSPPPPYHYASPPPPKKSPPPPYYYKSPPSPSP SPPPPYQYTSPPPPKKSPPPPYHYASPPPPKKAPPPSYSYKSPPPPSPSPPPPYQYTSPPPPKNSPPPPYYYKSPPPPSPSPPPQYHYTSPPPPKRSPPP PYHYTSPPPPKKSPPPHYYKSPPPPSSSPPPPNYYTSPPPLVKSSPPPYYYTSPPPPSSSPPPPYYYRSPPPPTHSPPPPHIYA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.003G204450 [exp]	0	1
AT3G23530			Cyclopropane-fatty-acyl-phosph...		Potri.010G067700 [exp]	1.41	0.9872
AT3G23510			Cyclopropane-fatty-acyl-phosph...		Potri.010G067600 [exp]	2.44	0.9811
					Potri.001G019795 [exp]	2.44	0.9823
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.001G127400 [exp]	5.65	0.9598
					Potri.001G019985 [exp]	7.74	0.9701
AT1G52540			Protein kinase superfamily pro...		Potri.015G134500 [exp]	9.16	0.9679
AT1G52540			Protein kinase superfamily pro...		Potri.012G132200 [exp]	9.48	0.9675
AT2G38940		PHT1;4, ATPT2	ARABIDOPSIS THALIANA PHOSPHATE...		Potri.010G071600 [exp]	10.39	0.9675
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.001G228200 [exp]	12.40	0.9603
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Potri.010G139500 [exp]	12.72	0.9579

Compare expression of checked genes

Potri.003G204450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.